Wall clock time and date at job start Mon Mar 30 2020 01:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42903 * 109.47200 * 2 1 4 4 C 1.42893 * 114.00366 * 180.02562 * 3 2 1 5 5 H 1.09003 * 112.84813 * 18.80304 * 4 3 2 6 6 C 1.53783 * 113.69044 * 247.53715 * 4 3 2 7 7 C 1.53776 * 87.08135 * 270.86841 * 6 4 3 8 8 H 1.09005 * 113.68708 * 89.12825 * 7 6 4 9 9 N 1.46899 * 113.61696 * 220.01716 * 7 6 4 10 10 C 1.46906 * 110.99984 * 252.49927 * 9 7 6 11 11 C 1.53002 * 109.46724 * 184.69633 * 10 9 7 12 12 C 1.50698 * 115.54934 * 294.90126 * 11 10 9 13 13 H 1.08000 * 120.00157 * 99.42802 * 12 11 10 14 14 C 1.37883 * 120.00055 * 279.41765 * 12 11 10 15 15 N 1.31511 * 120.00052 * 5.43823 * 14 12 11 16 16 Si 1.86801 * 119.99832 * 185.43295 * 14 12 11 17 17 H 1.48498 * 109.47256 * 270.00412 * 16 14 12 18 18 H 1.48504 * 109.46913 * 150.00305 * 16 14 12 19 19 H 1.48502 * 109.47075 * 30.00501 * 16 14 12 20 20 C 1.52996 * 117.51728 * 80.60733 * 11 10 9 21 21 C 1.52997 * 60.00252 * 107.47783 * 20 11 10 22 22 C 1.53781 * 113.61856 * 150.00037 * 4 3 2 23 23 H 1.09004 * 113.68848 * 334.64770 * 22 4 3 24 24 O 1.42897 * 113.61807 * 203.75115 * 22 4 3 25 25 C 1.42899 * 114.00125 * 112.50203 * 24 22 4 26 26 H 1.08998 * 109.47097 * 299.99391 * 1 2 3 27 27 H 1.09004 * 109.47405 * 59.99720 * 1 2 3 28 28 H 1.09003 * 109.46914 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47097 * 240.00609 * 2 1 3 30 30 H 1.08998 * 109.47827 * 120.00184 * 2 1 3 31 31 H 1.09001 * 113.61490 * 156.32027 * 6 4 3 32 32 H 1.08999 * 113.61547 * 25.42517 * 6 4 3 33 33 H 1.00901 * 110.99835 * 128.54736 * 9 7 6 34 34 H 1.09001 * 109.46647 * 64.70215 * 10 9 7 35 35 H 1.08992 * 109.47429 * 304.69859 * 10 9 7 36 36 H 0.97009 * 119.99776 * 354.98757 * 15 14 12 37 37 H 1.09005 * 117.49804 * 214.96798 * 20 11 10 38 38 H 1.08998 * 117.49772 * 359.97438 * 20 11 10 39 39 H 1.09000 * 117.49492 * 252.51266 * 21 20 11 40 40 H 1.08994 * 117.50275 * 107.48969 * 21 20 11 41 41 H 1.08996 * 109.47178 * 300.00194 * 25 24 22 42 42 H 1.09000 * 109.46916 * 60.00253 * 25 24 22 43 43 H 1.08998 * 109.47131 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9277 0.5458 -0.3247 6 6 4.0048 2.0452 1.3006 7 6 3.8417 3.4320 0.6566 8 1 2.8678 3.8870 0.8374 9 7 4.9583 4.3451 0.9347 10 6 4.5582 5.3920 1.8845 11 6 5.7065 6.3880 2.0590 12 6 6.9556 5.8349 2.6952 13 1 7.7938 5.5468 2.0780 14 6 7.0285 5.6967 4.0651 15 7 5.9726 5.9459 4.8083 16 14 8.6273 5.1554 4.8654 17 1 8.6550 3.6739 4.9636 18 1 8.7238 5.7435 6.2256 19 1 9.7740 5.6186 4.0433 20 6 5.8775 7.4648 0.9857 21 6 5.3403 7.8411 2.3679 22 6 3.9483 2.7254 -0.7051 23 1 3.2637 3.1195 -1.4562 24 8 5.2891 2.6058 -1.1846 25 6 5.3992 2.6069 -2.6093 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 5.0430 1.7680 1.4833 32 1 3.3650 1.8890 2.1692 33 1 5.3167 4.7483 0.0820 34 1 4.3214 4.9382 2.8469 35 1 3.6803 5.9129 1.5026 36 1 5.1648 6.2964 4.4012 37 1 6.8937 7.7731 0.7395 38 1 5.1722 7.4635 0.1546 39 1 4.2815 8.0876 2.4463 40 1 6.0029 8.3970 3.0312 41 1 4.8355 1.7682 -3.0179 42 1 4.9986 3.5407 -3.0040 43 1 6.4475 2.5132 -2.8928 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894198123.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:11 Heat of formation + Delta-G solvation = -41.081617 kcal Electronic energy + Delta-G solvation = -21441.977031 eV Core-core repulsion = 18296.180440 eV Total energy + Delta-G solvation = -3145.796591 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.93180 -37.42244 -37.04026 -35.34348 -32.46370 -31.69145 -30.70819 -26.82475 -25.61794 -24.69934 -24.45156 -22.93851 -22.59013 -21.14574 -19.54520 -19.09012 -16.97460 -16.66011 -16.08078 -15.87620 -15.64166 -15.22161 -14.33838 -14.17319 -13.74455 -13.61810 -13.50889 -13.21953 -12.84269 -12.69842 -12.62750 -12.19361 -11.72202 -11.66855 -11.44107 -11.26165 -11.18406 -10.69626 -10.64809 -10.56145 -10.36669 -10.24732 -10.00570 -9.72792 -9.33879 -9.18868 -8.41187 -8.31611 -8.12969 -7.45218 -6.16043 -3.85329 3.21527 3.54514 3.57780 3.72997 3.99761 4.65283 4.65979 4.70476 4.85857 4.89984 5.02385 5.12813 5.19711 5.20806 5.26992 5.33948 5.40970 5.42012 5.52610 5.53085 5.64179 5.71963 5.74532 5.91466 6.04812 6.22797 6.25309 6.37065 6.44542 6.47850 6.53835 6.62361 6.81220 6.95971 7.05071 7.31167 7.36625 7.46794 8.02598 8.25356 8.48725 8.63145 9.07047 9.86026 11.23762 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.018516 B = 0.004798 C = 0.004577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.873308 B = 5834.338761 C = 6116.233327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.367 6.367 4 C 0.044 3.956 5 H 0.077 0.923 6 C -0.132 4.132 7 C 0.072 3.928 8 H 0.075 0.925 9 N -0.643 5.643 10 C 0.100 3.900 11 C 0.030 3.970 12 C -0.545 4.545 13 H 0.051 0.949 14 C 0.024 3.976 15 N -0.915 5.915 16 Si 1.069 2.931 17 H -0.289 1.289 18 H -0.288 1.288 19 H -0.291 1.291 20 C -0.200 4.200 21 C -0.184 4.184 22 C 0.062 3.938 23 H 0.072 0.928 24 O -0.342 6.342 25 C 0.028 3.972 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.046 0.954 30 H 0.050 0.950 31 H 0.103 0.897 32 H 0.067 0.933 33 H 0.338 0.662 34 H 0.070 0.930 35 H -0.006 1.006 36 H 0.272 0.728 37 H 0.079 0.921 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.082 0.918 41 H 0.037 0.963 42 H 0.041 0.959 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.888 -9.978 -12.728 17.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.287 6.287 4 C -0.015 4.015 5 H 0.095 0.905 6 C -0.171 4.171 7 C -0.039 4.039 8 H 0.093 0.907 9 N -0.274 5.274 10 C -0.029 4.029 11 C 0.030 3.970 12 C -0.583 4.583 13 H 0.070 0.930 14 C -0.180 4.180 15 N -0.550 5.550 16 Si 0.898 3.102 17 H -0.216 1.216 18 H -0.214 1.214 19 H -0.217 1.217 20 C -0.237 4.237 21 C -0.223 4.223 22 C 0.002 3.998 23 H 0.090 0.910 24 O -0.260 6.260 25 C -0.068 4.068 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.122 0.878 32 H 0.085 0.915 33 H 0.157 0.843 34 H 0.088 0.912 35 H 0.012 0.988 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.101 0.899 41 H 0.055 0.945 42 H 0.060 0.940 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.877 -10.626 -10.658 16.547 hybrid contribution -1.414 0.773 -2.312 2.818 sum -8.291 -9.854 -12.970 18.277 Atomic orbital electron populations 1.21748 0.93809 1.02123 1.03162 1.22515 0.95400 0.83906 1.00072 1.87841 1.19826 1.26294 1.94693 1.23602 0.81027 0.98218 0.98687 0.90527 1.23496 1.02020 0.95636 0.95930 1.23205 0.94300 0.93943 0.92438 0.90701 1.60257 1.30239 1.20724 1.16178 1.21704 0.93918 0.91571 0.95687 1.19156 0.95789 0.85578 0.96525 1.21143 0.98344 1.45520 0.93269 0.93046 1.25658 1.02925 0.95224 0.94164 1.70699 1.03414 1.41400 1.39533 0.83549 0.74675 0.76449 0.75482 1.21593 1.21395 1.21701 1.22817 1.00072 1.09373 0.91453 1.22792 0.98354 1.03012 0.98108 1.23604 0.84350 0.95546 0.96260 0.90963 1.88043 1.23905 1.93623 1.20387 1.22853 1.02640 0.99693 0.81644 0.91699 0.91996 0.91178 0.93592 0.93161 0.87829 0.91458 0.84328 0.91158 0.98832 0.91714 0.90254 0.92052 0.91863 0.89906 0.94477 0.94048 0.89330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.28 37.16 0.38 -0.92 16 2 C 0.06 0.60 6.50 37.16 0.24 0.84 16 3 O -0.37 -5.02 10.28 -35.23 -0.36 -5.38 16 4 C 0.04 0.61 4.20 -25.92 -0.11 0.51 16 5 H 0.08 0.99 7.87 -51.93 -0.41 0.58 16 6 C -0.13 -2.22 7.65 -25.92 -0.20 -2.42 16 7 C 0.07 1.27 4.03 -66.90 -0.27 1.00 16 8 H 0.08 1.33 7.80 -51.93 -0.41 0.93 16 9 N -0.64 -13.43 6.22 -105.86 -0.66 -14.09 16 10 C 0.10 2.32 5.28 -3.82 -0.02 2.30 16 11 C 0.03 0.76 0.97 -155.66 -0.15 0.61 16 12 C -0.54 -15.41 8.72 -34.44 -0.30 -15.71 16 13 H 0.05 1.50 7.82 -52.49 -0.41 1.09 16 14 C 0.02 0.70 5.42 -17.82 -0.10 0.60 16 15 N -0.91 -27.57 13.61 55.43 0.75 -26.82 16 16 Si 1.07 25.96 29.91 -169.99 -5.08 20.88 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 C -0.20 -4.44 9.95 -26.73 -0.27 -4.70 16 21 C -0.18 -4.36 8.97 -26.73 -0.24 -4.60 16 22 C 0.06 0.92 4.00 -25.92 -0.10 0.82 16 23 H 0.07 0.98 7.87 -51.93 -0.41 0.58 16 24 O -0.34 -5.24 9.83 -35.23 -0.35 -5.59 16 25 C 0.03 0.32 10.85 101.05 1.10 1.41 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.10 1.89 8.14 -51.93 -0.42 1.47 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.34 6.91 8.05 -39.29 -0.32 6.59 16 34 H 0.07 1.82 7.63 -51.93 -0.40 1.42 16 35 H -0.01 -0.14 7.99 -51.93 -0.41 -0.55 16 36 H 0.27 8.13 6.08 -40.82 -0.25 7.89 16 37 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 39 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.08 2.08 8.14 -51.93 -0.42 1.65 16 41 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 353.07 15.07 5.32 5.32 Total: -1.00 -30.99 353.07 -8.13 -39.12 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -7.72 Total: 6.82 kcal Atomic # 6 Polarization: -20.22 SS G_CDS: -0.03 Total: -20.26 kcal Atomic # 7 Polarization: -41.01 SS G_CDS: 0.10 Total: -40.91 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: -0.71 Total: -10.97 kcal Atomic # 14 Polarization: 25.96 SS G_CDS: -5.08 Total: 20.88 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.99 -8.13 -39.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894198123.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.959 kcal (2) G-P(sol) polarization free energy of solvation -30.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds