Wall clock time and date at job start Mon Mar 30 2020 01:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42903 * 109.47200 * 2 1 4 4 C 1.42893 * 114.00366 * 180.02562 * 3 2 1 5 5 H 1.09003 * 112.84813 * 18.80304 * 4 3 2 6 6 C 1.53783 * 113.69044 * 247.53715 * 4 3 2 7 7 C 1.53776 * 87.08135 * 270.86841 * 6 4 3 8 8 H 1.09005 * 113.68708 * 89.12825 * 7 6 4 9 9 N 1.46899 * 113.61696 * 220.01716 * 7 6 4 10 10 C 1.46906 * 110.99984 * 252.49927 * 9 7 6 11 11 C 1.53002 * 109.46724 * 184.69633 * 10 9 7 12 12 C 1.50698 * 115.54934 * 294.90126 * 11 10 9 13 13 H 1.08000 * 120.00157 * 99.42802 * 12 11 10 14 14 C 1.37883 * 120.00055 * 279.41765 * 12 11 10 15 15 N 1.31511 * 120.00052 * 5.43823 * 14 12 11 16 16 Si 1.86801 * 119.99832 * 185.43295 * 14 12 11 17 17 H 1.48498 * 109.47256 * 270.00412 * 16 14 12 18 18 H 1.48504 * 109.46913 * 150.00305 * 16 14 12 19 19 H 1.48502 * 109.47075 * 30.00501 * 16 14 12 20 20 C 1.52996 * 117.51728 * 80.60733 * 11 10 9 21 21 C 1.52997 * 60.00252 * 107.47783 * 20 11 10 22 22 C 1.53781 * 113.61856 * 150.00037 * 4 3 2 23 23 H 1.09004 * 113.68848 * 334.64770 * 22 4 3 24 24 O 1.42897 * 113.61807 * 203.75115 * 22 4 3 25 25 C 1.42899 * 114.00125 * 112.50203 * 24 22 4 26 26 H 1.08998 * 109.47097 * 299.99391 * 1 2 3 27 27 H 1.09004 * 109.47405 * 59.99720 * 1 2 3 28 28 H 1.09003 * 109.46914 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47097 * 240.00609 * 2 1 3 30 30 H 1.08998 * 109.47827 * 120.00184 * 2 1 3 31 31 H 1.09001 * 113.61490 * 156.32027 * 6 4 3 32 32 H 1.08999 * 113.61547 * 25.42517 * 6 4 3 33 33 H 1.00901 * 110.99835 * 128.54736 * 9 7 6 34 34 H 1.09001 * 109.46647 * 64.70215 * 10 9 7 35 35 H 1.08992 * 109.47429 * 304.69859 * 10 9 7 36 36 H 0.97009 * 119.99776 * 354.98757 * 15 14 12 37 37 H 1.09005 * 117.49804 * 214.96798 * 20 11 10 38 38 H 1.08998 * 117.49772 * 359.97438 * 20 11 10 39 39 H 1.09000 * 117.49492 * 252.51266 * 21 20 11 40 40 H 1.08994 * 117.50275 * 107.48969 * 21 20 11 41 41 H 1.08996 * 109.47178 * 300.00194 * 25 24 22 42 42 H 1.09000 * 109.46916 * 60.00253 * 25 24 22 43 43 H 1.08998 * 109.47131 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9277 0.5458 -0.3247 6 6 4.0048 2.0452 1.3006 7 6 3.8417 3.4320 0.6566 8 1 2.8678 3.8870 0.8374 9 7 4.9583 4.3451 0.9347 10 6 4.5582 5.3920 1.8845 11 6 5.7065 6.3880 2.0590 12 6 6.9556 5.8349 2.6952 13 1 7.7938 5.5468 2.0780 14 6 7.0285 5.6967 4.0651 15 7 5.9726 5.9459 4.8083 16 14 8.6273 5.1554 4.8654 17 1 8.6550 3.6739 4.9636 18 1 8.7238 5.7435 6.2256 19 1 9.7740 5.6186 4.0433 20 6 5.8775 7.4648 0.9857 21 6 5.3403 7.8411 2.3679 22 6 3.9483 2.7254 -0.7051 23 1 3.2637 3.1195 -1.4562 24 8 5.2891 2.6058 -1.1846 25 6 5.3992 2.6069 -2.6093 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 5.0430 1.7680 1.4833 32 1 3.3650 1.8890 2.1692 33 1 5.3167 4.7483 0.0820 34 1 4.3214 4.9382 2.8469 35 1 3.6803 5.9129 1.5026 36 1 5.1648 6.2964 4.4012 37 1 6.8937 7.7731 0.7395 38 1 5.1722 7.4635 0.1546 39 1 4.2815 8.0876 2.4463 40 1 6.0029 8.3970 3.0312 41 1 4.8355 1.7682 -3.0179 42 1 4.9986 3.5407 -3.0040 43 1 6.4475 2.5132 -2.8928 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894198123.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:11 Heat of formation + Delta-G solvation = -61.526972 kcal Electronic energy + Delta-G solvation = -21442.863608 eV Core-core repulsion = 18296.180440 eV Total energy + Delta-G solvation = -3146.683168 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.13201 -38.98739 -38.33737 -36.60672 -34.05116 -33.70873 -31.61425 -27.77893 -27.41511 -26.49875 -25.84761 -24.03792 -23.71443 -22.97989 -21.28444 -20.59040 -18.60722 -18.07469 -17.31299 -17.05065 -16.63337 -16.43944 -15.84028 -15.61853 -15.56206 -15.06650 -14.83280 -14.62125 -14.34075 -14.17131 -13.70813 -13.53816 -13.17583 -12.94052 -12.72824 -12.60971 -12.48113 -12.31076 -12.23572 -12.11353 -11.91414 -11.72913 -11.47664 -11.31947 -10.73124 -10.43229 -10.38221 -10.29392 -10.15011 -9.09225 -8.42965 -6.11999 1.56137 1.64767 1.81465 2.20365 2.64585 2.94236 3.15469 3.34361 3.50186 3.53967 3.65671 3.84914 4.03128 4.16720 4.19117 4.21466 4.34255 4.37804 4.41492 4.47905 4.53176 4.54758 4.56091 4.56737 4.76385 4.81620 4.85206 4.88203 4.94535 5.01680 5.06307 5.15714 5.16847 5.26104 5.44352 5.56811 6.05151 6.22936 6.29098 6.37316 6.47929 6.69350 6.83852 7.65546 8.97736 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.018516 B = 0.004798 C = 0.004577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.873308 B = 5834.338761 C = 6116.233327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.048 3.952 3 O -0.382 6.382 4 C 0.063 3.937 5 H 0.093 0.907 6 C -0.139 4.139 7 C 0.060 3.940 8 H 0.072 0.928 9 N -0.654 5.654 10 C 0.117 3.883 11 C 0.000 4.000 12 C -0.552 4.552 13 H 0.036 0.964 14 C -0.023 4.023 15 N -0.939 5.939 16 Si 1.110 2.890 17 H -0.282 1.282 18 H -0.286 1.286 19 H -0.275 1.275 20 C -0.173 4.173 21 C -0.186 4.186 22 C 0.076 3.924 23 H 0.089 0.911 24 O -0.369 6.369 25 C 0.022 3.978 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.093 0.907 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.340 0.660 34 H 0.033 0.967 35 H 0.008 0.992 36 H 0.262 0.738 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.079 0.921 40 H 0.061 0.939 41 H 0.056 0.944 42 H 0.049 0.951 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.224 -10.888 -14.709 20.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.028 4.028 3 O -0.302 6.302 4 C 0.004 3.996 5 H 0.111 0.889 6 C -0.178 4.178 7 C -0.051 4.051 8 H 0.090 0.910 9 N -0.285 5.285 10 C -0.013 4.013 11 C -0.001 4.001 12 C -0.590 4.590 13 H 0.055 0.945 14 C -0.221 4.221 15 N -0.577 5.577 16 Si 0.934 3.066 17 H -0.208 1.208 18 H -0.212 1.212 19 H -0.200 1.200 20 C -0.210 4.210 21 C -0.224 4.224 22 C 0.016 3.984 23 H 0.107 0.893 24 O -0.287 6.287 25 C -0.074 4.074 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.112 0.888 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.102 0.898 32 H 0.076 0.924 33 H 0.159 0.841 34 H 0.052 0.948 35 H 0.026 0.974 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.109 0.891 39 H 0.098 0.902 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.222 -11.541 -12.670 18.598 hybrid contribution -1.333 1.037 -1.748 2.431 sum -8.555 -10.504 -14.419 19.784 Atomic orbital electron populations 1.21768 0.92530 1.03560 1.02693 1.22798 0.96483 0.82513 1.01025 1.87832 1.19202 1.28531 1.94601 1.23337 0.81575 0.98565 0.96130 0.88878 1.23456 1.01001 0.96015 0.97299 1.23336 0.93042 0.93375 0.95309 0.91033 1.60162 1.32008 1.20281 1.16020 1.21347 0.93691 0.91524 0.94717 1.19216 0.95588 0.86506 0.98791 1.21375 0.99173 1.45022 0.93393 0.94546 1.26876 1.04890 0.95108 0.95255 1.70803 1.03783 1.43325 1.39745 0.83011 0.72074 0.76519 0.74986 1.20812 1.21191 1.20017 1.22819 1.00672 1.06137 0.91340 1.22721 0.98949 1.01770 0.98997 1.23412 0.84771 0.95072 0.95106 0.89281 1.88005 1.24017 1.93711 1.22973 1.23077 1.03839 1.00989 0.79469 0.92734 0.91884 0.88809 0.91789 0.93029 0.89767 0.92366 0.84069 0.94845 0.97408 0.92747 0.90354 0.89084 0.90249 0.92019 0.92573 0.93195 0.88311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 10.28 71.98 0.74 -1.50 16 2 C 0.05 0.89 6.50 71.98 0.47 1.35 16 3 O -0.38 -9.79 10.28 -148.98 -1.53 -11.32 16 4 C 0.06 1.68 4.20 31.12 0.13 1.81 16 5 H 0.09 2.18 7.87 -2.39 -0.02 2.17 16 6 C -0.14 -4.70 7.65 31.12 0.24 -4.47 16 7 C 0.06 2.10 4.03 45.44 0.18 2.28 16 8 H 0.07 2.54 7.80 -2.38 -0.02 2.53 16 9 N -0.65 -27.35 6.22 -488.85 -3.04 -30.39 16 10 C 0.12 5.46 5.28 86.30 0.46 5.92 16 11 C 0.00 -0.02 0.97 -52.93 -0.05 -0.07 16 12 C -0.55 -31.59 8.72 25.60 0.22 -31.37 16 13 H 0.04 2.14 7.82 -2.91 -0.02 2.12 16 14 C -0.02 -1.33 5.42 84.66 0.46 -0.87 16 15 N -0.94 -57.88 13.61 21.45 0.29 -57.59 16 16 Si 1.11 52.71 29.91 68.60 2.05 54.76 16 17 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 18 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 19 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 20 C -0.17 -7.40 9.95 30.59 0.30 -7.09 16 21 C -0.19 -8.76 8.97 30.59 0.27 -8.48 16 22 C 0.08 2.13 4.00 31.12 0.12 2.25 16 23 H 0.09 2.19 7.87 -2.38 -0.02 2.17 16 24 O -0.37 -10.68 9.83 -148.98 -1.46 -12.14 16 25 C 0.02 0.43 10.85 113.37 1.23 1.66 16 26 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 32 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.34 13.68 8.05 -89.69 -0.72 12.95 16 34 H 0.03 1.79 7.63 -2.39 -0.02 1.77 16 35 H 0.01 0.34 7.99 -2.39 -0.02 0.33 16 36 H 0.26 16.19 6.08 -92.70 -0.56 15.62 16 37 H 0.08 3.36 8.14 -2.38 -0.02 3.35 16 38 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 39 H 0.08 3.43 8.14 -2.39 -0.02 3.41 16 40 H 0.06 3.13 8.14 -2.39 -0.02 3.11 16 41 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -67.19 353.07 1.53 -65.65 By element: Atomic # 1 Polarization: 29.15 SS G_CDS: 0.45 Total: 29.60 kcal Atomic # 6 Polarization: -43.35 SS G_CDS: 4.78 Total: -38.57 kcal Atomic # 7 Polarization: -85.23 SS G_CDS: -2.75 Total: -87.98 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: -2.99 Total: -23.46 kcal Atomic # 14 Polarization: 52.71 SS G_CDS: 2.05 Total: 54.76 kcal Total: -67.19 1.53 -65.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894198123.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.128 kcal (2) G-P(sol) polarization free energy of solvation -67.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds