Wall clock time and date at job start Mon Mar 30 2020 01:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45201 * 109.46871 * 2 1 4 4 C 1.34235 * 116.99699 * 179.97438 * 3 2 1 5 5 O 1.20814 * 120.00217 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99546 * 179.97438 * 4 3 2 7 7 H 1.08991 * 110.76935 * 303.20374 * 6 4 3 8 8 C 1.55144 * 110.70416 * 66.40678 * 6 4 3 9 9 C 1.54902 * 101.65014 * 154.03053 * 8 6 4 10 10 N 1.47841 * 104.80039 * 322.93075 * 9 8 6 11 11 C 1.46901 * 110.99969 * 146.36539 * 10 9 8 12 12 C 1.52995 * 109.47352 * 74.66126 * 11 10 9 13 13 H 1.09000 * 109.46937 * 305.30621 * 12 11 10 14 14 C 1.53004 * 109.47099 * 185.30749 * 12 11 10 15 15 C 1.53005 * 109.47485 * 65.30751 * 12 11 10 16 16 C 1.50690 * 109.47476 * 185.00108 * 15 12 11 17 17 H 1.08001 * 120.00116 * 0.02562 * 16 15 12 18 18 C 1.37876 * 120.00154 * 179.97438 * 16 15 12 19 19 N 1.31506 * 120.00215 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99906 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47107 * 60.00304 * 20 18 16 22 22 H 1.48503 * 109.46617 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47155 * 299.99977 * 20 18 16 24 24 C 1.47437 * 108.56515 * 24.09421 * 10 9 8 25 25 H 1.08992 * 109.47093 * 60.00196 * 1 2 3 26 26 H 1.08995 * 109.46583 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46875 * 299.99920 * 1 2 3 28 28 H 1.08994 * 109.47541 * 240.00007 * 2 1 3 29 29 H 1.09009 * 109.47273 * 119.99645 * 2 1 3 30 30 H 1.08996 * 110.98689 * 272.12450 * 8 6 4 31 31 H 1.08995 * 110.98978 * 35.94088 * 8 6 4 32 32 H 1.09007 * 110.37521 * 204.09781 * 9 8 6 33 33 H 1.09002 * 110.37611 * 81.76299 * 9 8 6 34 34 H 1.09001 * 109.46621 * 194.66004 * 11 10 9 35 35 H 1.08993 * 109.47271 * 314.65881 * 11 10 9 36 36 H 1.09002 * 109.46880 * 174.57564 * 14 12 11 37 37 H 1.08996 * 109.47051 * 294.57430 * 14 12 11 38 38 H 1.08993 * 109.46965 * 54.57638 * 14 12 11 39 39 H 1.09003 * 109.46779 * 305.00521 * 15 12 11 40 40 H 1.09001 * 109.46569 * 64.99830 * 15 12 11 41 41 H 0.97000 * 120.00480 * 179.97438 * 19 18 16 42 42 H 1.09002 * 109.88853 * 239.60574 * 24 10 9 43 43 H 1.09001 * 110.02462 * 118.49483 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5868 0.0005 6 6 3.9207 2.9375 0.0000 7 1 3.5531 3.5074 -0.8532 8 6 3.5929 3.6671 1.3293 9 6 4.7554 4.6867 1.4214 10 7 5.9329 3.9657 0.8929 11 6 6.8361 4.8815 0.1833 12 6 7.5973 5.7358 1.1989 13 1 6.8872 6.2401 1.8543 14 6 8.4384 6.7785 0.4597 15 6 8.5144 4.8397 2.0338 16 6 9.1713 5.6602 3.1136 17 1 8.9560 6.7153 3.1964 18 6 10.0465 5.0639 3.9964 19 7 10.3083 3.7790 3.8959 20 14 10.8614 6.0813 5.3345 21 1 9.8186 6.6751 6.2091 22 1 11.7513 5.2114 6.1448 23 1 11.6626 7.1661 4.7128 24 6 5.4631 2.8900 0.0007 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 2.6310 4.1761 1.2684 31 1 3.6137 2.9742 2.1704 32 1 4.9230 4.9786 2.4582 33 1 4.5410 5.5631 0.8097 34 1 7.5453 4.3047 -0.4104 35 1 6.2549 5.5290 -0.4731 36 1 8.9048 7.4479 1.1825 37 1 9.2114 6.2760 -0.1216 38 1 7.7981 7.3544 -0.2084 39 1 7.9267 4.0428 2.4897 40 1 9.2800 4.4046 1.3915 41 1 10.9243 3.3595 4.5168 42 1 5.8042 1.9240 0.3731 43 1 5.8395 3.0518 -1.0094 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896961025.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:56 Heat of formation + Delta-G solvation = -101.246582 kcal Electronic energy + Delta-G solvation = -20934.611026 eV Core-core repulsion = 17786.205487 eV Total energy + Delta-G solvation = -3148.405539 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.79166 -38.74022 -36.72699 -35.19741 -32.51378 -31.97827 -30.79742 -29.07302 -26.93362 -25.58243 -23.91786 -22.78283 -22.36694 -21.13885 -20.09059 -18.81191 -17.94945 -16.79006 -16.62224 -16.27289 -15.64221 -14.56966 -14.47114 -14.37063 -13.98979 -13.53491 -13.24218 -13.01697 -12.95060 -12.81062 -12.22139 -12.09079 -11.92982 -11.84099 -11.70064 -11.39851 -11.28741 -11.07232 -10.83811 -10.80825 -10.74535 -10.74089 -10.38995 -10.29391 -10.09215 -9.60089 -9.02361 -8.81227 -8.19627 -7.83725 -5.83780 -3.84509 2.10433 2.47756 3.40645 3.45270 3.47206 4.19210 4.42299 4.49266 4.57445 4.64347 4.69721 4.77677 4.98571 4.98999 5.31341 5.37446 5.42549 5.46867 5.51181 5.57212 5.64726 5.68295 5.78212 5.87889 6.04275 6.10401 6.16428 6.24877 6.32441 6.33067 6.40081 6.54145 7.00555 7.07117 7.30983 7.37384 7.53267 7.65375 7.89592 8.12044 8.26215 8.61732 9.23491 9.77381 11.27312 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.028122 B = 0.003555 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.422302 B = 7873.991381 C = 8295.153122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.359 6.359 4 C 0.474 3.526 5 O -0.500 6.500 6 C -0.106 4.106 7 H 0.110 0.890 8 C -0.114 4.114 9 C 0.045 3.955 10 N -0.512 5.512 11 C 0.058 3.942 12 C -0.082 4.082 13 H 0.055 0.945 14 C -0.132 4.132 15 C 0.035 3.965 16 C -0.513 4.513 17 H 0.051 0.949 18 C 0.056 3.944 19 N -0.895 5.895 20 Si 0.885 3.115 21 H -0.279 1.279 22 H -0.289 1.289 23 H -0.279 1.279 24 C 0.054 3.946 25 H 0.065 0.935 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.047 0.953 34 H 0.068 0.932 35 H 0.021 0.979 36 H 0.061 0.939 37 H 0.046 0.954 38 H 0.027 0.973 39 H 0.033 0.967 40 H 0.009 0.991 41 H 0.258 0.742 42 H 0.097 0.903 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.177 -2.926 -9.885 21.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.276 6.276 4 C 0.316 3.684 5 O -0.387 6.387 6 C -0.126 4.126 7 H 0.128 0.872 8 C -0.152 4.152 9 C -0.082 4.082 10 N -0.236 5.236 11 C -0.070 4.070 12 C -0.101 4.101 13 H 0.074 0.926 14 C -0.190 4.190 15 C -0.002 4.002 16 C -0.552 4.552 17 H 0.069 0.931 18 C -0.145 4.145 19 N -0.534 5.534 20 Si 0.713 3.287 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.205 1.205 24 C -0.074 4.074 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.108 0.892 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.040 0.960 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.046 0.954 39 H 0.051 0.949 40 H 0.027 0.973 41 H 0.068 0.932 42 H 0.115 0.885 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.570 -3.607 -9.398 21.123 hybrid contribution 0.117 0.651 0.061 0.665 sum -18.453 -2.956 -9.337 20.891 Atomic orbital electron populations 1.21800 0.92652 1.02928 1.03503 1.23030 0.95322 0.80378 1.02693 1.86511 1.24687 1.32269 1.84138 1.23488 0.80387 0.92457 0.72068 1.90677 1.60266 1.42962 1.44784 1.22361 0.98163 0.90252 1.01873 0.87211 1.22721 0.99310 0.98214 0.94957 1.23100 0.88199 0.94864 1.02062 1.63614 1.14603 1.11363 1.33972 1.22541 0.94802 0.94052 0.95564 1.21186 0.97336 0.95877 0.95676 0.92646 1.21702 0.99077 0.98791 0.99417 1.19051 0.93141 0.94493 0.93518 1.21274 1.25075 0.95143 1.13699 0.93090 1.24993 0.97026 0.94784 0.97648 1.69965 1.35964 1.09893 1.37608 0.86779 0.79414 0.80156 0.82304 1.20435 1.21470 1.20480 1.22917 0.89107 0.98632 0.96763 0.91550 0.90280 0.91413 0.91291 0.91119 0.89828 0.90077 0.89192 0.93450 0.91319 0.96047 0.92031 0.93511 0.95391 0.94866 0.97305 0.93215 0.88529 0.92255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.29 37.16 0.38 -0.56 16 2 C 0.06 0.55 6.19 37.16 0.23 0.78 16 3 O -0.36 -4.09 10.22 -39.27 -0.40 -4.49 16 4 C 0.47 6.24 7.26 36.01 0.26 6.50 16 5 O -0.50 -8.08 15.17 -18.74 -0.28 -8.37 16 6 C -0.11 -1.28 3.45 -89.95 -0.31 -1.59 16 7 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 8 C -0.11 -1.33 6.51 -24.59 -0.16 -1.49 16 9 C 0.05 0.64 5.98 -2.30 -0.01 0.62 16 10 N -0.51 -8.69 4.51 -231.26 -1.04 -9.73 16 11 C 0.06 1.01 4.06 -3.83 -0.02 0.99 16 12 C -0.08 -1.68 2.39 -90.62 -0.22 -1.89 16 13 H 0.06 1.15 7.57 -51.93 -0.39 0.75 16 14 C -0.13 -2.49 8.91 37.16 0.33 -2.15 16 15 C 0.03 0.92 4.39 -27.89 -0.12 0.79 16 16 C -0.51 -14.64 8.47 -34.45 -0.29 -14.93 16 17 H 0.05 1.41 7.06 -52.49 -0.37 1.04 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -27.67 13.29 55.43 0.74 -26.94 16 20 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 C 0.05 0.80 6.26 -2.84 -0.02 0.78 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.62 8.13 -51.93 -0.42 0.19 16 29 H 0.07 0.67 8.13 -51.92 -0.42 0.24 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 1.02 8.04 -51.93 -0.42 0.61 16 32 H 0.09 1.38 8.14 -51.92 -0.42 0.95 16 33 H 0.05 0.60 7.53 -51.93 -0.39 0.21 16 34 H 0.07 1.22 7.87 -51.93 -0.41 0.81 16 35 H 0.02 0.32 7.69 -51.93 -0.40 -0.07 16 36 H 0.06 1.23 7.12 -51.93 -0.37 0.86 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.03 0.95 7.63 -51.93 -0.40 0.55 16 40 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 42 H 0.10 1.66 6.81 -51.93 -0.35 1.31 16 43 H 0.06 0.81 7.48 -51.93 -0.39 0.42 16 LS Contribution 346.32 15.07 5.22 5.22 Total: -1.00 -32.63 346.32 -8.51 -41.14 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -7.67 Total: -3.34 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: -0.04 Total: -10.61 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: -0.31 Total: -36.66 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: -0.69 Total: -12.86 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.63 -8.51 -41.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896961025.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.108 kcal (2) G-P(sol) polarization free energy of solvation -32.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds