Wall clock time and date at job start Mon Mar 30 2020 01:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45201 * 109.46871 * 2 1 4 4 C 1.34235 * 116.99699 * 179.97438 * 3 2 1 5 5 O 1.20814 * 120.00217 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99546 * 179.97438 * 4 3 2 7 7 H 1.08991 * 110.76935 * 303.20374 * 6 4 3 8 8 C 1.55144 * 110.70416 * 66.40678 * 6 4 3 9 9 C 1.54902 * 101.65014 * 154.03053 * 8 6 4 10 10 N 1.47841 * 104.80039 * 322.93075 * 9 8 6 11 11 C 1.46901 * 110.99969 * 146.36539 * 10 9 8 12 12 C 1.52995 * 109.47352 * 74.66126 * 11 10 9 13 13 H 1.09000 * 109.46937 * 305.30621 * 12 11 10 14 14 C 1.53004 * 109.47099 * 185.30749 * 12 11 10 15 15 C 1.53005 * 109.47485 * 65.30751 * 12 11 10 16 16 C 1.50690 * 109.47476 * 185.00108 * 15 12 11 17 17 H 1.08001 * 120.00116 * 0.02562 * 16 15 12 18 18 C 1.37876 * 120.00154 * 179.97438 * 16 15 12 19 19 N 1.31506 * 120.00215 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99906 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47107 * 60.00304 * 20 18 16 22 22 H 1.48503 * 109.46617 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47155 * 299.99977 * 20 18 16 24 24 C 1.47437 * 108.56515 * 24.09421 * 10 9 8 25 25 H 1.08992 * 109.47093 * 60.00196 * 1 2 3 26 26 H 1.08995 * 109.46583 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46875 * 299.99920 * 1 2 3 28 28 H 1.08994 * 109.47541 * 240.00007 * 2 1 3 29 29 H 1.09009 * 109.47273 * 119.99645 * 2 1 3 30 30 H 1.08996 * 110.98689 * 272.12450 * 8 6 4 31 31 H 1.08995 * 110.98978 * 35.94088 * 8 6 4 32 32 H 1.09007 * 110.37521 * 204.09781 * 9 8 6 33 33 H 1.09002 * 110.37611 * 81.76299 * 9 8 6 34 34 H 1.09001 * 109.46621 * 194.66004 * 11 10 9 35 35 H 1.08993 * 109.47271 * 314.65881 * 11 10 9 36 36 H 1.09002 * 109.46880 * 174.57564 * 14 12 11 37 37 H 1.08996 * 109.47051 * 294.57430 * 14 12 11 38 38 H 1.08993 * 109.46965 * 54.57638 * 14 12 11 39 39 H 1.09003 * 109.46779 * 305.00521 * 15 12 11 40 40 H 1.09001 * 109.46569 * 64.99830 * 15 12 11 41 41 H 0.97000 * 120.00480 * 179.97438 * 19 18 16 42 42 H 1.09002 * 109.88853 * 239.60574 * 24 10 9 43 43 H 1.09001 * 110.02462 * 118.49483 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5868 0.0005 6 6 3.9207 2.9375 0.0000 7 1 3.5531 3.5074 -0.8532 8 6 3.5929 3.6671 1.3293 9 6 4.7554 4.6867 1.4214 10 7 5.9329 3.9657 0.8929 11 6 6.8361 4.8815 0.1833 12 6 7.5973 5.7358 1.1989 13 1 6.8872 6.2401 1.8543 14 6 8.4384 6.7785 0.4597 15 6 8.5144 4.8397 2.0338 16 6 9.1713 5.6602 3.1136 17 1 8.9560 6.7153 3.1964 18 6 10.0465 5.0639 3.9964 19 7 10.3083 3.7790 3.8959 20 14 10.8614 6.0813 5.3345 21 1 9.8186 6.6751 6.2091 22 1 11.7513 5.2114 6.1448 23 1 11.6626 7.1661 4.7128 24 6 5.4631 2.8900 0.0007 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 2.6310 4.1761 1.2684 31 1 3.6137 2.9742 2.1704 32 1 4.9230 4.9786 2.4582 33 1 4.5410 5.5631 0.8097 34 1 7.5453 4.3047 -0.4104 35 1 6.2549 5.5290 -0.4731 36 1 8.9048 7.4479 1.1825 37 1 9.2114 6.2760 -0.1216 38 1 7.7981 7.3544 -0.2084 39 1 7.9267 4.0428 2.4897 40 1 9.2800 4.4046 1.3915 41 1 10.9243 3.3595 4.5168 42 1 5.8042 1.9240 0.3731 43 1 5.8395 3.0518 -1.0094 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896961025.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:56 Heat of formation + Delta-G solvation = -121.197435 kcal Electronic energy + Delta-G solvation = -20935.476160 eV Core-core repulsion = 17786.205487 eV Total energy + Delta-G solvation = -3149.270673 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.81904 -39.90578 -37.77416 -36.81337 -34.44564 -32.92054 -32.00293 -30.15202 -28.97618 -26.90107 -25.10338 -24.51536 -23.25701 -22.32688 -21.14537 -20.44518 -18.96323 -18.44693 -17.74375 -17.60484 -16.81695 -16.54572 -15.64314 -15.57698 -15.14185 -14.62990 -14.57664 -14.37637 -14.19156 -13.92137 -13.59165 -13.31182 -13.22862 -12.97816 -12.87770 -12.74107 -12.61345 -12.56075 -12.41980 -12.28552 -12.15856 -11.88737 -11.81691 -11.55155 -11.45904 -11.39538 -10.91992 -10.84754 -10.45474 -9.08429 -8.09670 -6.18791 1.07951 1.40402 1.43690 1.51070 1.58177 2.45730 3.05299 3.22955 3.34956 3.53358 3.80070 3.98832 4.06521 4.08408 4.17975 4.28867 4.33414 4.34327 4.41010 4.59190 4.60241 4.78056 4.83247 4.87987 4.92039 4.92382 4.94093 5.00167 5.11191 5.12055 5.14398 5.33930 5.41767 5.48387 5.53583 5.68409 5.95154 6.04508 6.15207 6.27384 6.39547 6.65923 7.00654 7.48568 9.01839 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.028122 B = 0.003555 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.422302 B = 7873.991381 C = 8295.153122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.050 3.950 3 O -0.354 6.354 4 C 0.476 3.524 5 O -0.539 6.539 6 C -0.096 4.096 7 H 0.146 0.854 8 C -0.104 4.104 9 C 0.044 3.956 10 N -0.549 5.549 11 C 0.067 3.933 12 C -0.075 4.075 13 H 0.055 0.945 14 C -0.126 4.126 15 C 0.045 3.955 16 C -0.527 4.527 17 H 0.059 0.941 18 C -0.005 4.005 19 N -0.937 5.937 20 Si 0.958 3.042 21 H -0.267 1.267 22 H -0.288 1.288 23 H -0.267 1.267 24 C 0.055 3.945 25 H 0.072 0.928 26 H 0.098 0.902 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.119 0.881 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.044 0.956 37 H 0.039 0.961 38 H 0.068 0.932 39 H -0.003 1.003 40 H -0.025 1.025 41 H 0.259 0.741 42 H 0.061 0.939 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.206 -0.956 -10.632 23.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.023 4.023 3 O -0.271 6.271 4 C 0.320 3.680 5 O -0.429 6.429 6 C -0.115 4.115 7 H 0.163 0.837 8 C -0.142 4.142 9 C -0.083 4.083 10 N -0.273 5.273 11 C -0.060 4.060 12 C -0.094 4.094 13 H 0.073 0.927 14 C -0.184 4.184 15 C 0.008 3.992 16 C -0.565 4.565 17 H 0.077 0.923 18 C -0.202 4.202 19 N -0.578 5.578 20 Si 0.783 3.217 21 H -0.192 1.192 22 H -0.213 1.213 23 H -0.192 1.192 24 C -0.073 4.073 25 H 0.091 0.909 26 H 0.117 0.883 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.137 0.863 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.087 0.913 39 H 0.016 0.984 40 H -0.007 1.007 41 H 0.067 0.933 42 H 0.080 0.920 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.632 -1.614 -10.151 23.051 hybrid contribution 0.725 -0.030 0.298 0.785 sum -19.907 -1.644 -9.853 22.273 Atomic orbital electron populations 1.21813 0.90030 1.04380 1.03888 1.23317 0.97335 0.79293 1.02386 1.86507 1.23443 1.33603 1.83516 1.23718 0.80771 0.92482 0.70993 1.90671 1.61233 1.44258 1.46708 1.22326 0.95818 0.89996 1.03399 0.83651 1.22684 1.00036 0.97366 0.94069 1.23114 0.87901 0.96102 1.01145 1.63418 1.16418 1.12338 1.35161 1.22348 0.94911 0.94021 0.94748 1.21035 0.96633 0.95705 0.96021 0.92655 1.21625 0.99254 0.98165 0.99377 1.18863 0.92709 0.94352 0.93295 1.21721 1.24965 0.95708 1.14139 0.92279 1.25956 0.97869 0.95934 1.00420 1.70131 1.36893 1.11933 1.38856 0.85615 0.78488 0.78542 0.79068 1.19239 1.21332 1.19174 1.22739 0.91530 0.96352 0.96646 0.90883 0.88317 0.91228 0.91288 0.91915 0.86262 0.91834 0.91254 0.90983 0.92495 0.92413 0.93653 0.94229 0.91299 0.98414 1.00696 0.93256 0.92042 0.91003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 10.29 71.98 0.74 -0.75 16 2 C 0.05 0.87 6.19 71.98 0.45 1.32 16 3 O -0.35 -7.53 10.22 -51.46 -0.53 -8.06 16 4 C 0.48 12.22 7.26 71.24 0.52 12.74 16 5 O -0.54 -17.89 15.17 22.00 0.33 -17.55 16 6 C -0.10 -2.11 3.45 -10.36 -0.04 -2.15 16 7 H 0.15 2.24 8.14 -2.39 -0.02 2.22 16 8 C -0.10 -2.21 6.51 31.98 0.21 -2.00 16 9 C 0.04 1.18 5.98 86.77 0.52 1.70 16 10 N -0.55 -18.59 4.51 -885.58 -3.99 -22.59 16 11 C 0.07 2.26 4.06 86.30 0.35 2.61 16 12 C -0.08 -3.05 2.39 -10.79 -0.03 -3.08 16 13 H 0.06 2.24 7.57 -2.39 -0.02 2.23 16 14 C -0.13 -4.57 8.91 71.98 0.64 -3.93 16 15 C 0.04 2.45 4.39 29.85 0.13 2.58 16 16 C -0.53 -30.62 8.47 25.60 0.22 -30.40 16 17 H 0.06 3.26 7.06 -2.91 -0.02 3.24 16 18 C -0.01 -0.31 5.46 84.66 0.46 0.16 16 19 N -0.94 -59.89 13.29 21.45 0.28 -59.61 16 20 Si 0.96 45.80 29.54 68.60 2.03 47.82 16 21 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 22 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 23 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 24 C 0.06 1.64 6.26 86.65 0.54 2.18 16 25 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.07 1.19 8.13 -2.39 -0.02 1.17 16 29 H 0.06 1.18 8.13 -2.38 -0.02 1.16 16 30 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.06 1.58 8.04 -2.39 -0.02 1.56 16 32 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 33 H 0.07 1.57 7.53 -2.39 -0.02 1.55 16 34 H 0.06 2.02 7.87 -2.39 -0.02 2.00 16 35 H 0.06 1.54 7.69 -2.39 -0.02 1.52 16 36 H 0.04 1.76 7.12 -2.39 -0.02 1.74 16 37 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.00 -0.16 7.63 -2.39 -0.02 -0.17 16 40 H -0.03 -1.53 8.14 -2.39 -0.02 -1.55 16 41 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 42 H 0.06 2.24 6.81 -2.39 -0.02 2.23 16 43 H 0.07 1.90 7.48 -2.39 -0.02 1.89 16 Total: -1.00 -73.86 346.32 3.79 -70.07 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: 0.95 Total: 8.95 kcal Atomic # 6 Polarization: -23.75 SS G_CDS: 4.71 Total: -19.03 kcal Atomic # 7 Polarization: -78.49 SS G_CDS: -3.71 Total: -82.20 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -0.19 Total: -25.61 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.82 kcal Total: -73.86 3.79 -70.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896961025.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.132 kcal (2) G-P(sol) polarization free energy of solvation -73.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds