Wall clock time and date at job start Mon Mar 30 2020 01:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.45203 * 109.46896 * 2 1 4 4 C 1.34227 * 116.99738 * 179.97438 * 3 2 1 5 5 O 1.20835 * 119.99885 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00103 * 180.02562 * 4 3 2 7 7 H 1.09000 * 110.35016 * 302.13778 * 6 4 3 8 8 C 1.54592 * 110.31006 * 64.28209 * 6 4 3 9 9 C 1.54941 * 102.91953 * 140.87436 * 8 6 4 10 10 N 1.48528 * 103.22644 * 322.58556 * 9 8 6 11 11 C 1.46905 * 110.99503 * 159.72074 * 10 9 8 12 12 C 1.52997 * 109.47150 * 52.60569 * 11 10 9 13 13 H 1.09002 * 109.47153 * 304.99641 * 12 11 10 14 14 C 1.53000 * 109.47060 * 64.99960 * 12 11 10 15 15 C 1.53002 * 109.46817 * 184.99872 * 12 11 10 16 16 C 1.50703 * 109.46970 * 175.00092 * 15 12 11 17 17 H 1.08002 * 119.99817 * 359.97438 * 16 15 12 18 18 C 1.37870 * 120.00164 * 179.97438 * 16 15 12 19 19 N 1.31515 * 120.00042 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00234 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47025 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47498 * 119.99753 * 20 18 16 23 23 H 1.48508 * 109.47386 * 240.00118 * 20 18 16 24 24 C 1.47903 * 105.82106 * 39.21122 * 10 9 8 25 25 H 1.08998 * 109.47094 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47069 * 300.00679 * 1 2 3 27 27 H 1.09005 * 109.46436 * 60.00819 * 1 2 3 28 28 H 1.08992 * 109.47410 * 239.99742 * 2 1 3 29 29 H 1.08996 * 109.46474 * 119.99444 * 2 1 3 30 30 H 1.09003 * 110.72371 * 259.23297 * 8 6 4 31 31 H 1.08999 * 110.72232 * 22.51711 * 8 6 4 32 32 H 1.09004 * 110.66028 * 204.14971 * 9 8 6 33 33 H 1.08997 * 110.66081 * 81.02478 * 9 8 6 34 34 H 1.09001 * 109.47063 * 292.59965 * 11 10 9 35 35 H 1.09004 * 109.46681 * 172.60590 * 11 10 9 36 36 H 1.09004 * 109.46724 * 180.02562 * 14 12 11 37 37 H 1.09001 * 109.47194 * 299.99650 * 14 12 11 38 38 H 1.08992 * 109.47399 * 59.99823 * 14 12 11 39 39 H 1.09000 * 109.47059 * 294.99790 * 15 12 11 40 40 H 1.08996 * 109.47073 * 54.99883 * 15 12 11 41 41 H 0.97001 * 120.00168 * 180.02562 * 19 18 16 42 42 H 1.08990 * 109.92122 * 94.02295 * 24 10 9 43 43 H 1.09002 * 109.91549 * 215.31353 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9208 2.9374 0.0012 7 1 3.5636 3.4958 -0.8642 8 6 3.5441 3.6734 1.3074 9 6 4.8360 4.4579 1.6480 10 7 5.9175 3.5192 1.2540 11 6 7.1848 4.2330 1.0477 12 6 7.4987 5.0818 2.2813 13 1 6.6574 5.7420 2.4917 14 6 7.7411 4.1656 3.4825 15 6 8.7514 5.9200 2.0182 16 6 8.9905 6.8452 3.1834 17 1 8.3162 6.8366 4.0270 18 6 10.0701 7.7028 3.1726 19 7 10.8915 7.7129 2.1456 20 14 10.3661 8.8502 4.6166 21 1 9.3063 8.6457 5.6366 22 1 11.6933 8.5595 5.2159 23 1 10.3334 10.2580 4.1451 24 6 5.4596 2.8793 0.0016 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5137 -0.8901 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 2.7112 4.3561 1.1391 31 1 3.3063 2.9605 2.0969 32 1 4.8844 4.6745 2.7152 33 1 4.8929 5.3770 1.0648 34 1 7.0998 4.8791 0.1740 35 1 7.9865 3.5115 0.8894 36 1 7.9643 4.7704 4.3614 37 1 6.8487 3.5685 3.6699 38 1 8.5824 3.5054 3.2720 39 1 9.6106 5.2606 1.8956 40 1 8.6116 6.5072 1.1106 41 1 11.6512 8.3160 2.1381 42 1 5.8520 3.4225 -0.8579 43 1 5.7920 1.8417 -0.0283 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896961027.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:00 Heat of formation + Delta-G solvation = -102.808135 kcal Electronic energy + Delta-G solvation = -20828.889995 eV Core-core repulsion = 17680.416741 eV Total energy + Delta-G solvation = -3148.473253 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.87124 -38.81580 -36.78556 -35.24858 -32.68655 -32.01455 -30.81112 -29.12029 -26.85756 -25.67921 -24.12262 -22.92126 -22.35607 -21.22646 -20.08521 -18.66388 -18.03647 -16.82896 -16.72902 -16.43344 -15.51211 -14.89142 -14.56853 -14.29458 -14.17702 -13.79842 -13.27954 -13.06857 -12.91744 -12.66451 -12.26639 -12.06396 -11.99269 -11.91138 -11.64676 -11.51348 -11.36238 -11.09776 -10.88522 -10.83105 -10.79893 -10.71546 -10.44097 -10.27660 -10.14264 -9.63769 -9.15037 -8.92555 -8.32132 -8.11606 -5.96714 -3.97749 2.06043 2.42857 3.32603 3.40261 3.44160 4.19104 4.29887 4.46883 4.49507 4.59614 4.63846 4.70003 4.93982 5.01295 5.26690 5.34293 5.37233 5.39228 5.42817 5.60106 5.63948 5.65981 5.73158 5.82106 6.00476 6.05408 6.08624 6.16637 6.26313 6.44964 6.53128 6.67156 7.02767 7.06090 7.18995 7.26106 7.40757 7.59929 7.70516 7.86329 8.03623 8.47481 9.08815 9.65649 11.14867 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.050954 B = 0.003048 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.384208 B = 9184.186178 C = 9362.508764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.358 6.358 4 C 0.473 3.527 5 O -0.501 6.501 6 C -0.093 4.093 7 H 0.111 0.889 8 C -0.109 4.109 9 C 0.035 3.965 10 N -0.511 5.511 11 C 0.051 3.949 12 C -0.084 4.084 13 H 0.057 0.943 14 C -0.124 4.124 15 C 0.027 3.973 16 C -0.511 4.511 17 H 0.056 0.944 18 C 0.054 3.946 19 N -0.897 5.897 20 Si 0.889 3.111 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.285 1.285 24 C 0.039 3.961 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.051 0.949 34 H 0.032 0.968 35 H 0.072 0.928 36 H 0.054 0.946 37 H 0.040 0.960 38 H 0.041 0.959 39 H 0.017 0.983 40 H 0.012 0.988 41 H 0.259 0.741 42 H 0.054 0.946 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.900 -12.082 -5.395 23.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.275 6.275 4 C 0.315 3.685 5 O -0.388 6.388 6 C -0.113 4.113 7 H 0.129 0.871 8 C -0.147 4.147 9 C -0.093 4.093 10 N -0.235 5.235 11 C -0.076 4.076 12 C -0.103 4.103 13 H 0.075 0.925 14 C -0.182 4.182 15 C -0.011 4.011 16 C -0.549 4.549 17 H 0.075 0.925 18 C -0.146 4.146 19 N -0.537 5.537 20 Si 0.717 3.283 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.089 4.089 25 H 0.097 0.903 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.109 0.891 33 H 0.069 0.931 34 H 0.050 0.950 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.035 0.965 40 H 0.031 0.969 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -19.433 -12.714 -5.055 23.767 hybrid contribution 0.246 1.130 -0.022 1.157 sum -19.187 -11.584 -5.077 22.981 Atomic orbital electron populations 1.21805 0.92623 1.02940 1.03550 1.23027 0.95352 0.80350 1.02638 1.86511 1.24620 1.32262 1.84123 1.23553 0.80378 0.92633 0.71907 1.90657 1.60230 1.42954 1.44979 1.21944 0.97121 0.90140 1.02101 0.87084 1.22494 0.98563 0.98955 0.94694 1.23270 0.89263 0.94398 1.02376 1.64913 1.03017 1.28302 1.27306 1.22534 0.90429 0.96174 0.98499 1.21285 1.00488 0.95706 0.92840 0.92456 1.21608 0.99669 0.98459 0.98428 1.19133 0.91224 0.93952 0.96787 1.21261 1.10066 1.19654 1.03920 0.92539 1.25025 0.96237 0.97420 0.95938 1.69977 1.15350 1.38429 1.29911 0.86579 0.78077 0.80743 0.82857 1.19762 1.21090 1.21139 1.23004 0.90377 1.02819 0.92730 0.90276 0.91403 0.91505 0.91300 0.91176 0.89862 0.90435 0.89101 0.93069 0.94978 0.90923 0.92699 0.94064 0.93982 0.96509 0.96940 0.93166 0.92820 0.88192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 10.29 37.16 0.38 -0.48 16 2 C 0.06 0.51 6.19 37.16 0.23 0.74 16 3 O -0.36 -3.82 10.22 -39.25 -0.40 -4.22 16 4 C 0.47 5.81 7.12 36.01 0.26 6.06 16 5 O -0.50 -7.56 14.99 -18.76 -0.28 -7.84 16 6 C -0.09 -1.03 3.49 -90.42 -0.32 -1.35 16 7 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 8 C -0.11 -1.17 6.60 -24.87 -0.16 -1.33 16 9 C 0.03 0.46 5.08 -1.90 -0.01 0.45 16 10 N -0.51 -7.84 4.85 -230.45 -1.12 -8.96 16 11 C 0.05 0.90 4.42 -3.82 -0.02 0.88 16 12 C -0.08 -1.72 2.02 -90.62 -0.18 -1.90 16 13 H 0.06 1.16 6.52 -51.93 -0.34 0.82 16 14 C -0.12 -2.45 8.89 37.16 0.33 -2.12 16 15 C 0.03 0.68 4.45 -27.88 -0.12 0.56 16 16 C -0.51 -14.28 8.41 -34.44 -0.29 -14.57 16 17 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 18 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 19 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 20 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 21 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 C 0.04 0.52 6.30 -2.75 -0.02 0.50 16 25 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 29 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.08 0.86 7.86 -51.93 -0.41 0.46 16 32 H 0.09 1.26 7.56 -51.93 -0.39 0.87 16 33 H 0.05 0.69 8.01 -51.93 -0.42 0.27 16 34 H 0.03 0.56 7.81 -51.93 -0.41 0.16 16 35 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 36 H 0.05 1.14 6.95 -51.93 -0.36 0.78 16 37 H 0.04 0.73 7.75 -51.93 -0.40 0.33 16 38 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.05 0.68 7.57 -51.93 -0.39 0.29 16 43 H 0.10 1.48 6.42 -51.93 -0.33 1.15 16 LS Contribution 344.28 15.07 5.19 5.19 Total: -1.00 -31.59 344.28 -8.52 -40.11 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -7.61 Total: -3.58 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: -0.02 Total: -11.10 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: -0.38 Total: -35.27 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: -0.68 Total: -12.07 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.59 -8.52 -40.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896961027.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.693 kcal (2) G-P(sol) polarization free energy of solvation -31.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds