Wall clock time and date at job start Mon Mar 30 2020 01:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45203 * 109.47571 * 2 1 4 4 C 1.34227 * 117.00282 * 180.02562 * 3 2 1 5 5 O 1.20825 * 120.00034 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99923 * 180.02562 * 4 3 2 7 7 H 1.09002 * 110.27629 * 59.29588 * 6 4 3 8 8 C 1.54598 * 110.39117 * 297.14651 * 6 4 3 9 9 C 1.54932 * 102.92273 * 219.08242 * 8 6 4 10 10 N 1.48539 * 103.22489 * 37.41993 * 9 8 6 11 11 C 1.46900 * 110.99796 * 200.27757 * 10 9 8 12 12 C 1.53006 * 109.47187 * 307.39392 * 11 10 9 13 13 H 1.08998 * 109.46877 * 55.00033 * 12 11 10 14 14 C 1.52996 * 109.46772 * 295.00340 * 12 11 10 15 15 C 1.53000 * 109.46885 * 175.00088 * 12 11 10 16 16 C 1.50701 * 109.46686 * 184.99750 * 15 12 11 17 17 H 1.08000 * 120.00392 * 0.02562 * 16 15 12 18 18 C 1.37877 * 119.99985 * 179.97438 * 16 15 12 19 19 N 1.31512 * 119.99703 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00108 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47046 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.47286 * 120.00266 * 20 18 16 23 23 H 1.48501 * 109.46868 * 240.00220 * 20 18 16 24 24 C 1.47897 * 105.81843 * 320.78612 * 10 9 8 25 25 H 1.09005 * 109.46768 * 300.00514 * 1 2 3 26 26 H 1.09001 * 109.47040 * 59.99728 * 1 2 3 27 27 H 1.08995 * 109.47169 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47294 * 240.00042 * 2 1 3 29 29 H 1.08997 * 109.47642 * 119.99855 * 2 1 3 30 30 H 1.08994 * 110.72376 * 337.44793 * 8 6 4 31 31 H 1.09002 * 110.71797 * 100.72700 * 8 6 4 32 32 H 1.08999 * 110.67033 * 278.98382 * 9 8 6 33 33 H 1.09005 * 110.81115 * 155.91631 * 9 8 6 34 34 H 1.08997 * 109.47506 * 67.39044 * 11 10 9 35 35 H 1.08997 * 109.46984 * 187.39447 * 11 10 9 36 36 H 1.08998 * 109.47169 * 299.99514 * 14 12 11 37 37 H 1.08998 * 109.47612 * 59.99844 * 14 12 11 38 38 H 1.09010 * 109.46956 * 179.97438 * 14 12 11 39 39 H 1.08997 * 109.47061 * 304.99525 * 15 12 11 40 40 H 1.08994 * 109.47136 * 65.00540 * 15 12 11 41 41 H 0.97006 * 119.99725 * 180.02562 * 19 18 16 42 42 H 1.08997 * 109.92227 * 265.97847 * 24 10 9 43 43 H 1.08999 * 109.91658 * 144.68234 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.5832 3.4855 0.8796 8 6 3.5151 3.6886 -1.2888 9 6 4.7992 4.4773 -1.6489 10 7 5.8891 3.5340 -1.2903 11 6 7.1608 4.2454 -1.1040 12 6 7.4472 5.1088 -2.3343 13 1 6.6015 5.7713 -2.5180 14 6 7.6624 4.2069 -3.5513 15 6 8.7056 5.9439 -2.0895 16 6 8.9187 6.8828 -3.2488 17 1 8.2257 6.8841 -4.0771 18 6 9.9979 7.7410 -3.2515 19 7 10.8414 7.7398 -2.2426 20 14 10.2616 8.9054 -4.6882 21 1 9.1800 8.7120 -5.6872 22 1 10.2387 10.3075 -4.1997 23 1 11.5756 8.6227 -5.3197 24 6 5.4593 2.8794 -0.0357 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.2596 2.9851 -2.0811 31 1 2.6864 4.3692 -1.0938 32 1 4.8693 5.3894 -1.0563 33 1 4.8256 4.7088 -2.7138 34 1 7.0956 4.8813 -0.2212 35 1 7.9657 3.5223 -0.9723 36 1 8.5081 3.5443 -3.3676 37 1 6.7659 3.6119 -3.7257 38 1 7.8660 4.8220 -4.4279 39 1 8.5863 6.5204 -1.1722 40 1 9.5672 5.2832 -1.9940 41 1 11.6005 8.3439 -2.2444 42 1 5.8709 3.4125 0.8213 43 1 5.7921 1.8415 -0.0255 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896961028.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:01 Heat of formation + Delta-G solvation = -121.576992 kcal Electronic energy + Delta-G solvation = -20830.552345 eV Core-core repulsion = 17681.265213 eV Total energy + Delta-G solvation = -3149.287132 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.81683 -39.94304 -37.76661 -36.83604 -34.53900 -32.90175 -32.02794 -30.13319 -28.82513 -27.10582 -25.31319 -24.37813 -23.20345 -22.51138 -21.05719 -20.25788 -18.95312 -18.52782 -17.71816 -17.58428 -16.82203 -16.46070 -16.02566 -15.61099 -15.11710 -14.86598 -14.51366 -14.44997 -14.15913 -13.76176 -13.53379 -13.28951 -13.18596 -12.98690 -12.87996 -12.75048 -12.62708 -12.54183 -12.41203 -12.29779 -12.18709 -11.85899 -11.81781 -11.53037 -11.46937 -11.35051 -11.06143 -10.89412 -10.52990 -9.33523 -8.16619 -6.25504 1.12532 1.40569 1.41287 1.54106 1.61548 2.42738 3.05043 3.17054 3.32605 3.57676 3.78090 4.00986 4.09107 4.11944 4.20361 4.25519 4.32344 4.35674 4.42026 4.52509 4.64530 4.81337 4.86520 4.88470 4.92392 4.93705 4.95970 5.00143 5.05561 5.12363 5.16275 5.28951 5.44974 5.45330 5.49190 5.55534 5.80044 5.89434 5.98668 6.05367 6.31797 6.69173 6.90641 7.42748 8.95718 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.050664 B = 0.003051 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.529349 B = 9174.810760 C = 9357.893341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.051 3.949 3 O -0.355 6.355 4 C 0.476 3.524 5 O -0.536 6.536 6 C -0.088 4.088 7 H 0.141 0.859 8 C -0.097 4.097 9 C 0.030 3.970 10 N -0.522 5.522 11 C 0.063 3.937 12 C -0.073 4.073 13 H 0.063 0.937 14 C -0.115 4.115 15 C 0.032 3.968 16 C -0.525 4.525 17 H 0.062 0.938 18 C -0.004 4.004 19 N -0.936 5.936 20 Si 0.961 3.039 21 H -0.261 1.261 22 H -0.279 1.279 23 H -0.281 1.281 24 C 0.038 3.962 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.098 0.902 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.113 0.887 32 H 0.052 0.948 33 H 0.085 0.915 34 H 0.030 0.970 35 H 0.062 0.938 36 H 0.033 0.967 37 H 0.062 0.938 38 H 0.040 0.960 39 H -0.012 1.012 40 H -0.012 1.012 41 H 0.261 0.739 42 H 0.061 0.939 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.113 -11.897 5.071 25.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.022 4.022 3 O -0.272 6.272 4 C 0.320 3.680 5 O -0.426 6.426 6 C -0.107 4.107 7 H 0.159 0.841 8 C -0.135 4.135 9 C -0.098 4.098 10 N -0.246 5.246 11 C -0.065 4.065 12 C -0.092 4.092 13 H 0.081 0.919 14 C -0.172 4.172 15 C -0.006 4.006 16 C -0.563 4.563 17 H 0.080 0.920 18 C -0.201 4.201 19 N -0.577 5.577 20 Si 0.786 3.214 21 H -0.185 1.185 22 H -0.205 1.205 23 H -0.207 1.207 24 C -0.090 4.090 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.117 0.883 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.131 0.869 32 H 0.071 0.929 33 H 0.104 0.896 34 H 0.048 0.952 35 H 0.080 0.920 36 H 0.052 0.948 37 H 0.081 0.919 38 H 0.060 0.940 39 H 0.006 0.994 40 H 0.006 0.994 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -21.692 -12.530 4.717 25.491 hybrid contribution 0.947 0.995 0.241 1.395 sum -20.744 -11.534 4.958 24.248 Atomic orbital electron populations 1.21817 0.90249 1.04338 1.03824 1.23299 0.97186 0.79289 1.02422 1.86508 1.23554 1.33591 1.83555 1.23742 0.80710 0.92614 0.70919 1.90647 1.61079 1.44105 1.46750 1.21955 0.95139 0.89892 1.03741 0.84120 1.22452 0.97936 0.98752 0.94336 1.23341 0.89809 0.94461 1.02162 1.64833 1.02512 1.27890 1.29371 1.22245 0.91742 0.95583 0.96929 1.21080 0.98010 0.95645 0.94485 0.91890 1.21504 1.00355 0.98126 0.97227 1.19022 0.92681 0.93637 0.95231 1.21648 1.09576 1.19496 1.05577 0.92000 1.25961 0.95946 0.99365 0.98827 1.70113 1.15262 1.39487 1.32848 0.85454 0.78186 0.78413 0.79344 1.18470 1.20508 1.20727 1.22951 0.92537 1.01526 0.91997 0.91066 0.91228 0.88336 0.91704 0.91344 0.90782 0.86854 0.92940 0.89628 0.95165 0.91981 0.94789 0.91879 0.94042 0.99392 0.99400 0.92990 0.92073 0.89896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.29 71.98 0.74 -0.58 16 2 C 0.05 0.80 6.19 71.98 0.45 1.24 16 3 O -0.36 -6.90 10.21 -51.38 -0.52 -7.42 16 4 C 0.48 10.98 7.13 71.24 0.51 11.49 16 5 O -0.54 -15.95 14.99 21.97 0.33 -15.62 16 6 C -0.09 -1.74 3.49 -10.66 -0.04 -1.78 16 7 H 0.14 2.01 8.14 -2.39 -0.02 1.99 16 8 C -0.10 -1.80 6.59 31.80 0.21 -1.59 16 9 C 0.03 0.73 5.09 86.65 0.44 1.17 16 10 N -0.52 -15.51 4.85 -883.01 -4.28 -19.79 16 11 C 0.06 2.23 4.42 86.31 0.38 2.61 16 12 C -0.07 -3.01 2.02 -10.79 -0.02 -3.03 16 13 H 0.06 2.51 6.51 -2.39 -0.02 2.50 16 14 C -0.11 -4.49 8.89 71.98 0.64 -3.85 16 15 C 0.03 1.68 4.45 29.85 0.13 1.82 16 16 C -0.52 -29.65 8.41 25.60 0.22 -29.43 16 17 H 0.06 3.36 7.06 -2.91 -0.02 3.34 16 18 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 19 N -0.94 -57.51 13.29 21.45 0.28 -57.23 16 20 Si 0.96 44.57 29.54 68.60 2.03 46.59 16 21 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 23 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 24 C 0.04 0.97 6.30 86.45 0.54 1.52 16 25 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 26 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.06 1.07 8.13 -2.38 -0.02 1.05 16 29 H 0.07 1.06 8.13 -2.39 -0.02 1.04 16 30 H 0.07 1.46 7.86 -2.39 -0.02 1.44 16 31 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.05 1.30 8.01 -2.39 -0.02 1.28 16 33 H 0.09 2.21 7.55 -2.38 -0.02 2.19 16 34 H 0.03 1.07 7.81 -2.39 -0.02 1.05 16 35 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.06 2.17 7.75 -2.39 -0.02 2.16 16 38 H 0.04 1.70 6.95 -2.38 -0.02 1.69 16 39 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 40 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 41 H 0.26 15.09 8.31 -92.70 -0.77 14.31 16 42 H 0.06 1.48 7.57 -2.39 -0.02 1.47 16 43 H 0.08 2.46 6.42 -2.39 -0.02 2.44 16 Total: -1.00 -68.65 344.26 3.45 -65.20 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: 0.96 Total: 8.44 kcal Atomic # 6 Polarization: -24.84 SS G_CDS: 4.66 Total: -20.18 kcal Atomic # 7 Polarization: -73.02 SS G_CDS: -4.00 Total: -77.02 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.20 Total: -23.04 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -68.65 3.45 -65.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896961028.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.375 kcal (2) G-P(sol) polarization free energy of solvation -68.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds