Wall clock time and date at job start Mon Mar 30 2020 00:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00426 * 2 1 3 5 5 O 1.42899 * 109.47131 * 304.99933 * 4 2 1 6 6 C 1.42901 * 114.00352 * 180.02562 * 5 4 2 7 7 C 1.52998 * 109.47530 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.47293 * 295.00217 * 7 6 5 9 9 C 1.52998 * 109.47293 * 179.97438 * 8 7 6 10 10 C 1.52999 * 109.46998 * 59.99559 * 9 8 7 11 11 C 1.53001 * 109.47331 * 299.99990 * 10 9 8 12 12 C 1.52997 * 109.47204 * 174.99455 * 7 6 5 13 13 N 1.46492 * 109.47363 * 120.00126 * 2 1 3 14 14 C 1.34779 * 120.00234 * 275.00260 * 13 2 1 15 15 O 1.21686 * 119.99620 * 0.02562 * 14 13 2 16 16 C 1.46365 * 120.00268 * 179.97438 * 14 13 2 17 17 H 1.08005 * 120.00232 * 0.02562 * 16 14 13 18 18 C 1.40049 * 120.00269 * 179.97438 * 16 14 13 19 19 N 1.30668 * 119.99790 * 0.02562 * 18 16 14 20 20 Si 1.86805 * 120.00180 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47070 * 90.00302 * 20 18 16 22 22 H 1.48498 * 109.47030 * 210.00578 * 20 18 16 23 23 H 1.48494 * 109.47024 * 330.00392 * 20 18 16 24 24 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 25 25 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 27 27 H 1.09001 * 109.47630 * 64.99767 * 4 2 1 28 28 H 1.09004 * 109.47346 * 184.99897 * 4 2 1 29 29 H 1.09007 * 109.46808 * 299.99826 * 6 5 4 30 30 H 1.08998 * 109.47165 * 59.99279 * 6 5 4 31 31 H 1.09000 * 109.46684 * 54.99698 * 7 6 5 32 32 H 1.08999 * 109.46565 * 299.99866 * 8 7 6 33 33 H 1.09001 * 109.46970 * 59.99448 * 8 7 6 34 34 H 1.09000 * 109.46684 * 299.99481 * 9 8 7 35 35 H 1.08998 * 109.46971 * 180.02562 * 9 8 7 36 36 H 1.09006 * 109.46933 * 180.02562 * 10 9 8 37 37 H 1.09000 * 109.47011 * 60.00677 * 10 9 8 38 38 H 1.08999 * 109.46915 * 300.00111 * 11 10 9 39 39 H 1.09001 * 109.46842 * 180.02562 * 11 10 9 40 40 H 1.08990 * 109.47537 * 300.00286 * 12 7 6 41 41 H 1.09010 * 109.46581 * 60.00733 * 12 7 6 42 42 H 0.97005 * 120.00153 * 94.99794 * 13 2 1 43 43 H 0.97001 * 119.99961 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 8 1.4703 -2.0302 -1.3096 6 6 1.8845 -2.7928 -2.4449 7 6 1.2171 -4.1690 -2.4061 8 6 1.7228 -4.9470 -1.1896 9 6 1.0549 -6.3229 -1.1505 10 6 1.3982 -7.0930 -2.4272 11 6 0.8925 -6.3150 -3.6437 12 6 1.5609 -4.9387 -3.6829 13 7 2.0184 -0.6906 1.1961 14 6 2.1471 -0.0183 2.3571 15 8 1.8572 1.1622 2.4119 16 6 2.6346 -0.7084 3.5523 17 1 2.8915 -1.7563 3.5038 18 6 2.7688 -0.0097 4.7586 19 7 2.4584 1.2582 4.8172 20 14 3.3916 -0.8904 6.2838 21 1 4.8716 -0.7860 6.3460 22 1 2.7998 -0.2641 7.4932 23 1 2.9983 -2.3211 6.2245 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.7517 -0.1582 -2.1370 28 1 3.1264 -0.7994 -1.2057 29 1 1.5932 -2.2729 -3.3576 30 1 2.9676 -2.9139 -2.4257 31 1 0.1363 -4.0467 -2.3355 32 1 2.8036 -5.0692 -1.2602 33 1 1.4778 -4.3985 -0.2801 34 1 -0.0259 -6.2002 -1.0797 35 1 1.4148 -6.8770 -0.2836 36 1 0.9220 -8.0731 -2.3995 37 1 2.4790 -7.2157 -2.4980 38 1 -0.1883 -6.1924 -3.5729 39 1 1.1367 -6.8638 -4.5532 40 1 1.2006 -4.3845 -4.5494 41 1 2.6418 -5.0610 -3.7534 42 1 2.2491 -1.6318 1.1525 43 1 2.5511 1.7421 5.6528 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928705152.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:16 Heat of formation + Delta-G solvation = -125.313196 kcal Electronic energy + Delta-G solvation = -21033.702308 eV Core-core repulsion = 17884.253161 eV Total energy + Delta-G solvation = -3149.449146 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.12198 -37.94258 -36.74353 -33.96953 -32.34140 -31.71443 -30.83579 -29.66285 -26.36349 -26.00625 -25.10278 -22.68291 -21.36445 -21.02196 -19.84125 -19.17623 -17.20615 -16.34296 -15.87669 -15.55617 -15.21916 -14.88304 -14.34124 -14.20858 -14.01677 -13.71027 -13.36168 -13.00381 -12.60468 -12.32303 -12.24912 -12.11208 -11.87825 -11.68916 -11.49612 -11.25265 -11.09218 -11.03329 -10.87640 -10.63709 -10.52494 -10.44621 -10.33298 -10.15426 -10.09812 -10.07056 -9.38329 -8.79867 -7.53671 -7.39166 -6.12264 -4.56993 3.17736 3.24432 3.28233 3.79356 4.15847 4.54245 4.62944 4.65122 4.70335 4.92869 4.99164 5.14616 5.21187 5.32892 5.35541 5.40376 5.46908 5.49410 5.53487 5.59122 5.61299 5.72523 5.80019 5.88597 5.89707 6.00072 6.04217 6.06703 6.12801 6.18251 6.30209 6.37544 6.40560 6.41523 6.73476 7.02127 7.41613 7.49616 8.04790 8.22644 8.42518 9.09105 9.65755 10.67204 10.86899 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020965 B = 0.004049 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.235608 B = 6914.023494 C = 7969.677160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.156 3.844 3 H 0.085 0.915 4 C 0.058 3.942 5 O -0.376 6.376 6 C 0.065 3.935 7 C -0.084 4.084 8 C -0.112 4.112 9 C -0.120 4.120 10 C -0.120 4.120 11 C -0.117 4.117 12 C -0.113 4.113 13 N -0.757 5.757 14 C 0.556 3.444 15 O -0.583 6.583 16 C -0.545 4.545 17 H 0.066 0.934 18 C 0.088 3.912 19 N -0.770 5.770 20 Si 0.906 3.094 21 H -0.273 1.273 22 H -0.280 1.280 23 H -0.265 1.265 24 H 0.043 0.957 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.043 0.957 30 H 0.045 0.955 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.383 0.617 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.263 -13.720 -16.005 21.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.049 3.951 3 H 0.102 0.898 4 C -0.019 4.019 5 O -0.295 6.295 6 C -0.012 4.012 7 C -0.102 4.102 8 C -0.150 4.150 9 C -0.158 4.158 10 C -0.158 4.158 11 C -0.155 4.155 12 C -0.150 4.150 13 N -0.412 5.412 14 C 0.360 3.640 15 O -0.466 6.466 16 C -0.582 4.582 17 H 0.085 0.915 18 C -0.131 4.131 19 N -0.398 5.398 20 Si 0.731 3.269 21 H -0.198 1.198 22 H -0.205 1.205 23 H -0.189 1.189 24 H 0.062 0.938 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.215 0.785 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.620 -12.731 -15.714 20.288 hybrid contribution 0.620 -0.752 0.459 1.077 sum -1.000 -13.482 -15.255 20.383 Atomic orbital electron populations 1.22056 0.96555 1.01613 1.00882 1.20542 0.93880 0.96358 0.84279 0.89761 1.22886 0.97118 0.83576 0.98309 1.87928 1.70112 1.26565 1.44898 1.22496 0.97957 0.91890 0.88814 1.21118 1.01042 0.92713 0.95329 1.21532 0.99778 0.95125 0.98531 1.21544 1.00787 0.96197 0.97264 1.21554 1.00967 0.98315 0.94947 1.21510 1.00365 0.95649 0.97942 1.21524 1.00770 0.95782 0.96949 1.46109 1.72803 1.13026 1.09310 1.18201 0.77741 0.86351 0.81747 1.90584 1.54996 1.16514 1.84549 1.20896 1.46816 0.97098 0.93406 0.91540 1.25697 0.93352 0.94450 0.99646 1.70025 1.35434 1.08208 1.26180 0.86405 0.79283 0.80285 0.80957 1.19816 1.20515 1.18935 0.93823 0.92470 0.92231 0.93251 0.93205 0.93922 0.93707 0.90479 0.92285 0.90581 0.92064 0.92029 0.92359 0.92130 0.91986 0.92200 0.92067 0.91908 0.78484 0.92234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.29 37.16 0.35 -2.53 16 2 C 0.16 3.08 2.98 -67.93 -0.20 2.87 16 3 H 0.08 1.83 7.58 -51.93 -0.39 1.43 16 4 C 0.06 0.89 5.68 37.16 0.21 1.10 16 5 O -0.38 -5.60 8.73 -35.23 -0.31 -5.91 16 6 C 0.07 0.76 5.32 37.16 0.20 0.96 16 7 C -0.08 -0.87 2.43 -90.62 -0.22 -1.09 16 8 C -0.11 -1.24 5.10 -26.73 -0.14 -1.38 16 9 C -0.12 -1.16 5.92 -26.73 -0.16 -1.32 16 10 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 11 C -0.12 -0.92 5.92 -26.70 -0.16 -1.08 16 12 C -0.11 -0.95 5.21 -26.71 -0.14 -1.09 16 13 N -0.76 -17.52 5.05 -55.22 -0.28 -17.80 16 14 C 0.56 16.09 7.71 -12.99 -0.10 15.99 16 15 O -0.58 -19.04 14.68 5.20 0.08 -18.96 16 16 C -0.55 -15.74 9.54 -35.64 -0.34 -16.08 16 17 H 0.07 1.77 7.85 -52.48 -0.41 1.36 16 18 C 0.09 2.50 5.50 -17.37 -0.10 2.40 16 19 N -0.77 -23.44 11.83 55.55 0.66 -22.79 16 20 Si 0.91 20.52 29.56 -169.99 -5.02 15.49 16 21 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 24 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.06 1.06 7.56 -51.93 -0.39 0.66 16 26 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 1.00 7.82 -51.93 -0.41 0.60 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 42 H 0.38 8.18 8.36 -40.82 -0.34 7.84 16 43 H 0.27 7.38 8.29 -40.82 -0.34 7.04 16 LS Contribution 345.42 15.07 5.21 5.21 Total: -1.00 -33.47 345.42 -8.47 -41.94 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -7.84 Total: 5.21 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -0.95 Total: -2.40 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: 0.38 Total: -40.58 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.23 Total: -24.87 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.47 -8.47 -41.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928705152.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.371 kcal (2) G-P(sol) polarization free energy of solvation -33.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds