Wall clock time and date at job start Mon Mar 30 2020 00:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00426 * 2 1 3 5 5 O 1.42899 * 109.47131 * 304.99933 * 4 2 1 6 6 C 1.42901 * 114.00352 * 180.02562 * 5 4 2 7 7 C 1.52998 * 109.47530 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.47293 * 295.00217 * 7 6 5 9 9 C 1.52998 * 109.47293 * 179.97438 * 8 7 6 10 10 C 1.52999 * 109.46998 * 59.99559 * 9 8 7 11 11 C 1.53001 * 109.47331 * 299.99990 * 10 9 8 12 12 C 1.52997 * 109.47204 * 174.99455 * 7 6 5 13 13 N 1.46492 * 109.47363 * 120.00126 * 2 1 3 14 14 C 1.34779 * 120.00234 * 275.00260 * 13 2 1 15 15 O 1.21686 * 119.99620 * 0.02562 * 14 13 2 16 16 C 1.46365 * 120.00268 * 179.97438 * 14 13 2 17 17 H 1.08005 * 120.00232 * 0.02562 * 16 14 13 18 18 C 1.40049 * 120.00269 * 179.97438 * 16 14 13 19 19 N 1.30668 * 119.99790 * 0.02562 * 18 16 14 20 20 Si 1.86805 * 120.00180 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47070 * 90.00302 * 20 18 16 22 22 H 1.48498 * 109.47030 * 210.00578 * 20 18 16 23 23 H 1.48494 * 109.47024 * 330.00392 * 20 18 16 24 24 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 25 25 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 27 27 H 1.09001 * 109.47630 * 64.99767 * 4 2 1 28 28 H 1.09004 * 109.47346 * 184.99897 * 4 2 1 29 29 H 1.09007 * 109.46808 * 299.99826 * 6 5 4 30 30 H 1.08998 * 109.47165 * 59.99279 * 6 5 4 31 31 H 1.09000 * 109.46684 * 54.99698 * 7 6 5 32 32 H 1.08999 * 109.46565 * 299.99866 * 8 7 6 33 33 H 1.09001 * 109.46970 * 59.99448 * 8 7 6 34 34 H 1.09000 * 109.46684 * 299.99481 * 9 8 7 35 35 H 1.08998 * 109.46971 * 180.02562 * 9 8 7 36 36 H 1.09006 * 109.46933 * 180.02562 * 10 9 8 37 37 H 1.09000 * 109.47011 * 60.00677 * 10 9 8 38 38 H 1.08999 * 109.46915 * 300.00111 * 11 10 9 39 39 H 1.09001 * 109.46842 * 180.02562 * 11 10 9 40 40 H 1.08990 * 109.47537 * 300.00286 * 12 7 6 41 41 H 1.09010 * 109.46581 * 60.00733 * 12 7 6 42 42 H 0.97005 * 120.00153 * 94.99794 * 13 2 1 43 43 H 0.97001 * 119.99961 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 8 1.4703 -2.0302 -1.3096 6 6 1.8845 -2.7928 -2.4449 7 6 1.2171 -4.1690 -2.4061 8 6 1.7228 -4.9470 -1.1896 9 6 1.0549 -6.3229 -1.1505 10 6 1.3982 -7.0930 -2.4272 11 6 0.8925 -6.3150 -3.6437 12 6 1.5609 -4.9387 -3.6829 13 7 2.0184 -0.6906 1.1961 14 6 2.1471 -0.0183 2.3571 15 8 1.8572 1.1622 2.4119 16 6 2.6346 -0.7084 3.5523 17 1 2.8915 -1.7563 3.5038 18 6 2.7688 -0.0097 4.7586 19 7 2.4584 1.2582 4.8172 20 14 3.3916 -0.8904 6.2838 21 1 4.8716 -0.7860 6.3460 22 1 2.7998 -0.2641 7.4932 23 1 2.9983 -2.3211 6.2245 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.7517 -0.1582 -2.1370 28 1 3.1264 -0.7994 -1.2057 29 1 1.5932 -2.2729 -3.3576 30 1 2.9676 -2.9139 -2.4257 31 1 0.1363 -4.0467 -2.3355 32 1 2.8036 -5.0692 -1.2602 33 1 1.4778 -4.3985 -0.2801 34 1 -0.0259 -6.2002 -1.0797 35 1 1.4148 -6.8770 -0.2836 36 1 0.9220 -8.0731 -2.3995 37 1 2.4790 -7.2157 -2.4980 38 1 -0.1883 -6.1924 -3.5729 39 1 1.1367 -6.8638 -4.5532 40 1 1.2006 -4.3845 -4.5494 41 1 2.6418 -5.0610 -3.7534 42 1 2.2491 -1.6318 1.1525 43 1 2.5511 1.7421 5.6528 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928705152.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:16 Heat of formation + Delta-G solvation = -147.257440 kcal Electronic energy + Delta-G solvation = -21034.653881 eV Core-core repulsion = 17884.253161 eV Total energy + Delta-G solvation = -3150.400720 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.14858 -39.49569 -38.22227 -35.71954 -34.49559 -32.71539 -31.61268 -31.40432 -28.16545 -27.59203 -26.11997 -23.44221 -22.85357 -22.11249 -21.09860 -20.56282 -19.23969 -17.67542 -17.33262 -16.95577 -16.46346 -16.19855 -15.88750 -15.14601 -15.07664 -14.86495 -14.81820 -14.39456 -14.26006 -14.00864 -13.35379 -13.16086 -13.06730 -12.97583 -12.82800 -12.69603 -12.64784 -12.56813 -12.08460 -12.01926 -11.97229 -11.84125 -11.78148 -11.29557 -10.93495 -10.92117 -10.88094 -10.46074 -9.82129 -9.41659 -8.27330 -6.83609 1.39602 1.41511 1.56558 2.25519 2.48752 2.71854 3.17421 3.65053 3.77910 3.86761 3.92866 4.01767 4.22338 4.26761 4.39511 4.42388 4.49709 4.53801 4.57018 4.60643 4.67905 4.71688 4.76274 4.81864 4.86121 4.88984 5.07255 5.10603 5.21770 5.28711 5.30878 5.32832 5.33838 5.40804 5.44241 5.53835 5.62403 5.91375 6.26643 6.28738 6.41096 6.88504 7.60133 8.52642 8.70167 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020965 B = 0.004049 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.235608 B = 6914.023494 C = 7969.677160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.148 3.852 3 H 0.060 0.940 4 C 0.073 3.927 5 O -0.394 6.394 6 C 0.061 3.939 7 C -0.080 4.080 8 C -0.112 4.112 9 C -0.120 4.120 10 C -0.118 4.118 11 C -0.116 4.116 12 C -0.108 4.108 13 N -0.746 5.746 14 C 0.540 3.460 15 O -0.631 6.631 16 C -0.576 4.576 17 H 0.083 0.917 18 C 0.029 3.971 19 N -0.822 5.822 20 Si 0.997 3.003 21 H -0.260 1.260 22 H -0.272 1.272 23 H -0.251 1.251 24 H 0.076 0.924 25 H 0.060 0.940 26 H 0.018 0.982 27 H 0.080 0.920 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.047 0.953 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.393 0.607 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.654 -15.872 -17.133 23.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.042 3.958 3 H 0.079 0.921 4 C -0.004 4.004 5 O -0.314 6.314 6 C -0.015 4.015 7 C -0.099 4.099 8 C -0.149 4.149 9 C -0.158 4.158 10 C -0.156 4.156 11 C -0.154 4.154 12 C -0.146 4.146 13 N -0.400 5.400 14 C 0.344 3.656 15 O -0.519 6.519 16 C -0.612 4.612 17 H 0.101 0.899 18 C -0.186 4.186 19 N -0.452 5.452 20 Si 0.816 3.184 21 H -0.185 1.185 22 H -0.197 1.197 23 H -0.175 1.175 24 H 0.095 0.905 25 H 0.079 0.921 26 H 0.037 0.963 27 H 0.098 0.902 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.226 0.774 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.014 -14.927 -16.899 22.570 hybrid contribution 0.396 -0.094 0.725 0.831 sum -0.618 -15.021 -16.174 22.082 Atomic orbital electron populations 1.21925 0.95837 1.01665 1.00496 1.20736 0.94457 0.95670 0.84939 0.92150 1.22628 0.97034 0.84100 0.96674 1.87900 1.70372 1.26391 1.46742 1.22709 0.98473 0.92064 0.88264 1.21110 1.00256 0.92369 0.96133 1.21497 0.99973 0.95750 0.97704 1.21536 1.00314 0.95614 0.98305 1.21544 1.01260 0.98568 0.94184 1.21520 1.00187 0.95359 0.98325 1.21503 1.01185 0.95901 0.95961 1.45825 1.71735 1.13263 1.09142 1.18551 0.77538 0.86026 0.83479 1.90537 1.57099 1.18499 1.85721 1.21430 1.47428 0.98087 0.94300 0.89928 1.26951 0.92805 0.95154 1.03651 1.70188 1.36681 1.10526 1.27766 0.85039 0.78932 0.79116 0.75309 1.18481 1.19695 1.17456 0.90475 0.92056 0.96266 0.90175 0.92854 0.92137 0.93123 0.91459 0.92205 0.93417 0.92528 0.92206 0.91408 0.91865 0.92158 0.90664 0.90935 0.91427 0.77393 0.91624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.35 9.29 71.98 0.67 -4.68 16 2 C 0.15 5.88 2.98 44.99 0.13 6.02 16 3 H 0.06 2.70 7.58 -2.39 -0.02 2.69 16 4 C 0.07 2.11 5.68 71.98 0.41 2.52 16 5 O -0.39 -11.17 8.73 -148.98 -1.30 -12.47 16 6 C 0.06 1.28 5.32 71.98 0.38 1.67 16 7 C -0.08 -1.54 2.43 -10.80 -0.03 -1.57 16 8 C -0.11 -2.40 5.10 30.59 0.16 -2.24 16 9 C -0.12 -2.21 5.92 30.59 0.18 -2.03 16 10 C -0.12 -1.70 5.92 30.59 0.18 -1.52 16 11 C -0.12 -1.53 5.92 30.61 0.18 -1.35 16 12 C -0.11 -1.54 5.21 30.61 0.16 -1.38 16 13 N -0.75 -35.28 5.05 -446.84 -2.26 -37.54 16 14 C 0.54 32.36 7.71 86.36 0.67 33.03 16 15 O -0.63 -43.15 14.68 -4.30 -0.06 -43.22 16 16 C -0.58 -33.81 9.54 24.83 0.24 -33.57 16 17 H 0.08 4.41 7.85 -2.91 -0.02 4.38 16 18 C 0.03 1.67 5.50 85.31 0.47 2.14 16 19 N -0.82 -51.45 11.83 21.84 0.26 -51.19 16 20 Si 1.00 42.07 29.56 68.60 2.03 44.10 16 21 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 22 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 23 H -0.25 -9.93 7.11 99.48 0.71 -9.23 16 24 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 25 H 0.06 2.25 7.56 -2.39 -0.02 2.23 16 26 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 30 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.07 1.43 8.14 -2.39 -0.02 1.42 16 32 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.05 1.27 7.82 -2.39 -0.02 1.26 16 34 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 37 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 42 H 0.39 16.95 8.36 -92.70 -0.78 16.18 16 43 H 0.27 15.50 8.29 -92.71 -0.77 14.73 16 Total: -1.00 -75.29 345.42 2.65 -72.64 By element: Atomic # 1 Polarization: 30.45 SS G_CDS: 0.19 Total: 30.64 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: 3.80 Total: -2.96 kcal Atomic # 7 Polarization: -86.73 SS G_CDS: -2.00 Total: -88.73 kcal Atomic # 8 Polarization: -54.32 SS G_CDS: -1.36 Total: -55.68 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -75.29 2.65 -72.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928705152.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.619 kcal (2) G-P(sol) polarization free energy of solvation -75.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds