Wall clock time and date at job start Mon Mar 30 2020 00:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47481 * 2 1 4 4 C 1.53005 * 109.46957 * 120.00830 * 2 1 3 5 5 O 1.42895 * 109.47347 * 54.99859 * 4 2 1 6 6 C 1.42894 * 113.99863 * 180.02562 * 5 4 2 7 7 C 1.53002 * 109.47240 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.46817 * 64.99822 * 7 6 5 9 9 C 1.52999 * 109.47317 * 179.97438 * 8 7 6 10 10 C 1.53005 * 109.47159 * 300.00546 * 9 8 7 11 11 C 1.52997 * 109.47452 * 59.99536 * 10 9 8 12 12 C 1.53000 * 109.47233 * 184.99627 * 7 6 5 13 13 N 1.46499 * 109.46733 * 240.00351 * 2 1 3 14 14 C 1.34780 * 120.00017 * 85.00096 * 13 2 1 15 15 O 1.21685 * 119.99864 * 0.02562 * 14 13 2 16 16 C 1.46372 * 119.99803 * 180.02562 * 14 13 2 17 17 H 1.08001 * 120.00464 * 0.02562 * 16 14 13 18 18 C 1.40054 * 119.99874 * 180.02562 * 16 14 13 19 19 N 1.30669 * 119.99900 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 119.99976 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47097 * 60.00040 * 20 18 16 22 22 H 1.48503 * 109.47150 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47207 * 299.99574 * 20 18 16 24 24 H 1.09008 * 109.46737 * 299.99516 * 1 2 3 25 25 H 1.09000 * 109.46814 * 59.99260 * 1 2 3 26 26 H 1.08998 * 109.47481 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46554 * 294.99222 * 4 2 1 28 28 H 1.09006 * 109.46505 * 174.99479 * 4 2 1 29 29 H 1.09008 * 109.47321 * 59.99557 * 6 5 4 30 30 H 1.08997 * 109.47221 * 299.99487 * 6 5 4 31 31 H 1.09002 * 109.47070 * 305.00002 * 7 6 5 32 32 H 1.08996 * 109.47853 * 300.00202 * 8 7 6 33 33 H 1.09002 * 109.47153 * 60.00231 * 8 7 6 34 34 H 1.09000 * 109.47486 * 180.02562 * 9 8 7 35 35 H 1.09002 * 109.46716 * 60.00091 * 9 8 7 36 36 H 1.09002 * 109.46935 * 299.99411 * 10 9 8 37 37 H 1.09001 * 109.46812 * 179.97438 * 10 9 8 38 38 H 1.08993 * 109.47194 * 179.97438 * 11 10 9 39 39 H 1.09002 * 109.46695 * 59.99734 * 11 10 9 40 40 H 1.08992 * 109.47399 * 300.00166 * 12 7 6 41 41 H 1.09004 * 109.46724 * 60.00652 * 12 7 6 42 42 H 0.97005 * 119.99967 * 264.99851 * 13 2 1 43 43 H 0.97001 * 120.00216 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7215 1.2492 5 8 1.4702 -2.0305 1.3092 6 6 1.8836 -2.7927 2.4450 7 6 1.2152 -4.1685 2.4067 8 6 1.7208 -4.9473 1.1907 9 6 1.0530 -6.3234 1.1526 10 6 1.3965 -7.0925 2.4299 11 6 0.8909 -6.3137 3.6458 12 6 1.5583 -4.9380 3.6838 13 7 2.0183 -0.6905 -1.1962 14 6 2.1469 -0.0181 -2.3572 15 8 1.8580 1.1627 -2.4116 16 6 2.6342 -0.7082 -3.5525 17 1 2.8903 -1.7564 -3.5043 18 6 2.7685 -0.0094 -4.7588 19 7 2.4582 1.2586 -4.8172 20 14 3.3910 -0.8899 -6.2840 21 1 2.4743 -2.0094 -6.6181 22 1 3.4410 0.0643 -7.4208 23 1 4.7521 -1.4247 -6.0260 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.7517 -0.1585 2.1369 28 1 3.1264 -0.7997 1.2054 29 1 1.5917 -2.2727 3.3575 30 1 2.9666 -2.9140 2.4266 31 1 0.1345 -4.0456 2.3357 32 1 1.4766 -4.3993 0.2808 33 1 2.8016 -5.0703 1.2616 34 1 1.4136 -6.8784 0.2865 35 1 -0.0277 -6.2008 1.0818 36 1 2.4773 -7.2151 2.5006 37 1 0.9204 -8.0727 2.4028 38 1 1.1352 -6.8619 4.5557 39 1 -0.1899 -6.1912 3.5750 40 1 2.6389 -5.0609 3.7548 41 1 1.1980 -4.3831 4.5501 42 1 2.2489 -1.6318 -1.1527 43 1 2.5516 1.7428 -5.6526 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928705153.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:18 Heat of formation + Delta-G solvation = -125.298536 kcal Electronic energy + Delta-G solvation = -21033.178947 eV Core-core repulsion = 17883.730437 eV Total energy + Delta-G solvation = -3149.448510 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.12463 -37.94343 -36.74399 -33.96906 -32.34034 -31.71395 -30.84131 -29.66227 -26.36369 -26.00463 -25.10340 -22.68161 -21.36597 -21.02108 -19.84077 -19.17566 -17.20468 -16.34296 -15.87790 -15.55559 -15.21650 -14.88281 -14.34296 -14.21027 -14.02248 -13.70956 -13.36169 -13.00399 -12.60392 -12.32083 -12.24862 -12.11175 -11.87860 -11.68855 -11.49829 -11.25063 -11.08270 -11.02430 -10.89388 -10.63129 -10.52440 -10.44308 -10.33272 -10.17656 -10.09746 -10.07148 -9.38325 -8.79070 -7.53792 -7.39136 -6.12029 -4.56947 3.19746 3.24214 3.26356 3.79360 4.15918 4.54188 4.63059 4.65210 4.70242 4.92908 4.99129 5.14553 5.21153 5.32890 5.35479 5.40556 5.46882 5.49399 5.53510 5.59137 5.61287 5.72528 5.80022 5.88624 5.89720 6.00051 6.04266 6.06621 6.12853 6.18194 6.30241 6.37512 6.40525 6.41468 6.73474 7.02174 7.41639 7.49579 8.04739 8.22608 8.42368 9.09047 9.65828 10.67390 10.86996 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020975 B = 0.004047 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.620655 B = 6916.192585 C = 7971.352672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.156 3.844 3 H 0.085 0.915 4 C 0.058 3.942 5 O -0.376 6.376 6 C 0.065 3.935 7 C -0.083 4.083 8 C -0.112 4.112 9 C -0.120 4.120 10 C -0.120 4.120 11 C -0.117 4.117 12 C -0.113 4.113 13 N -0.757 5.757 14 C 0.556 3.444 15 O -0.583 6.583 16 C -0.546 4.546 17 H 0.066 0.934 18 C 0.088 3.912 19 N -0.770 5.770 20 Si 0.906 3.094 21 H -0.268 1.268 22 H -0.281 1.281 23 H -0.269 1.269 24 H 0.043 0.957 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.043 0.957 30 H 0.045 0.955 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.383 0.617 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.268 -13.710 16.000 21.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.049 3.951 3 H 0.102 0.898 4 C -0.019 4.019 5 O -0.295 6.295 6 C -0.012 4.012 7 C -0.102 4.102 8 C -0.150 4.150 9 C -0.158 4.158 10 C -0.158 4.158 11 C -0.155 4.155 12 C -0.150 4.150 13 N -0.413 5.413 14 C 0.360 3.640 15 O -0.466 6.466 16 C -0.583 4.583 17 H 0.084 0.916 18 C -0.131 4.131 19 N -0.399 5.399 20 Si 0.731 3.269 21 H -0.193 1.193 22 H -0.206 1.206 23 H -0.193 1.193 24 H 0.062 0.938 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.215 0.785 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.622 -12.715 15.708 20.274 hybrid contribution 0.613 -0.766 -0.457 1.083 sum -1.008 -13.482 15.251 20.380 Atomic orbital electron populations 1.22056 0.96555 1.01615 1.00881 1.20545 0.93879 0.96359 0.84277 0.89757 1.22887 0.97118 0.83575 0.98311 1.87926 1.70154 1.26571 1.44846 1.22495 0.97958 0.91896 0.88806 1.21119 1.01038 0.92718 0.95323 1.21532 0.99780 0.95117 0.98538 1.21547 1.00786 0.96197 0.97264 1.21556 1.00967 0.98317 0.94948 1.21491 1.00376 0.95652 0.97951 1.21506 1.00781 0.95785 0.96952 1.46111 1.72813 1.13022 1.09306 1.18193 0.77726 0.86354 0.81745 1.90584 1.55018 1.16489 1.84556 1.20864 1.46918 0.97062 0.93423 0.91582 1.25694 0.93356 0.94447 0.99632 1.70014 1.35414 1.08182 1.26256 0.86464 0.79864 0.79730 0.80835 1.19315 1.20624 1.19345 0.93818 0.92237 0.92469 0.93249 0.93204 0.93927 0.93701 0.90476 0.90575 0.92291 0.92029 0.92059 0.92132 0.92357 0.92195 0.91992 0.91918 0.92066 0.78486 0.92170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.29 37.16 0.35 -2.53 16 2 C 0.16 3.08 2.98 -67.93 -0.20 2.87 16 3 H 0.08 1.83 7.58 -51.93 -0.39 1.43 16 4 C 0.06 0.89 5.68 37.16 0.21 1.10 16 5 O -0.38 -5.60 8.73 -35.23 -0.31 -5.91 16 6 C 0.07 0.76 5.32 37.16 0.20 0.96 16 7 C -0.08 -0.87 2.43 -90.62 -0.22 -1.09 16 8 C -0.11 -1.24 5.10 -26.73 -0.14 -1.38 16 9 C -0.12 -1.16 5.92 -26.73 -0.16 -1.32 16 10 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 11 C -0.12 -0.92 5.92 -26.76 -0.16 -1.08 16 12 C -0.11 -0.95 5.20 -26.76 -0.14 -1.09 16 13 N -0.76 -17.52 5.06 -55.21 -0.28 -17.80 16 14 C 0.56 16.10 7.71 -12.99 -0.10 16.00 16 15 O -0.58 -19.04 14.68 5.20 0.08 -18.96 16 16 C -0.55 -15.76 9.54 -35.63 -0.34 -16.10 16 17 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 18 C 0.09 2.51 5.50 -17.37 -0.10 2.41 16 19 N -0.77 -23.46 11.83 55.55 0.66 -22.80 16 20 Si 0.91 20.52 29.56 -169.99 -5.02 15.50 16 21 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 22 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 23 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 24 H 0.04 0.70 8.14 -51.92 -0.42 0.28 16 25 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 26 H 0.06 1.06 7.56 -51.93 -0.39 0.66 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.04 0.45 8.14 -51.92 -0.42 0.02 16 30 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.08 1.00 7.82 -51.93 -0.41 0.60 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.38 8.18 8.36 -40.82 -0.34 7.84 16 43 H 0.27 7.42 8.29 -40.82 -0.34 7.08 16 LS Contribution 345.42 15.07 5.21 5.21 Total: -1.00 -33.45 345.42 -8.47 -41.92 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -7.84 Total: 5.24 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: -0.95 Total: -2.40 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: 0.38 Total: -40.60 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.23 Total: -24.87 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.45 -8.47 -41.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928705153.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.374 kcal (2) G-P(sol) polarization free energy of solvation -33.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds