Wall clock time and date at job start Mon Mar 30 2020 00:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47481 * 2 1 4 4 C 1.53005 * 109.46957 * 120.00830 * 2 1 3 5 5 O 1.42895 * 109.47347 * 54.99859 * 4 2 1 6 6 C 1.42894 * 113.99863 * 180.02562 * 5 4 2 7 7 C 1.53002 * 109.47240 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.46817 * 64.99822 * 7 6 5 9 9 C 1.52999 * 109.47317 * 179.97438 * 8 7 6 10 10 C 1.53005 * 109.47159 * 300.00546 * 9 8 7 11 11 C 1.52997 * 109.47452 * 59.99536 * 10 9 8 12 12 C 1.53000 * 109.47233 * 184.99627 * 7 6 5 13 13 N 1.46499 * 109.46733 * 240.00351 * 2 1 3 14 14 C 1.34780 * 120.00017 * 85.00096 * 13 2 1 15 15 O 1.21685 * 119.99864 * 0.02562 * 14 13 2 16 16 C 1.46372 * 119.99803 * 180.02562 * 14 13 2 17 17 H 1.08001 * 120.00464 * 0.02562 * 16 14 13 18 18 C 1.40054 * 119.99874 * 180.02562 * 16 14 13 19 19 N 1.30669 * 119.99900 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 119.99976 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47097 * 60.00040 * 20 18 16 22 22 H 1.48503 * 109.47150 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47207 * 299.99574 * 20 18 16 24 24 H 1.09008 * 109.46737 * 299.99516 * 1 2 3 25 25 H 1.09000 * 109.46814 * 59.99260 * 1 2 3 26 26 H 1.08998 * 109.47481 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46554 * 294.99222 * 4 2 1 28 28 H 1.09006 * 109.46505 * 174.99479 * 4 2 1 29 29 H 1.09008 * 109.47321 * 59.99557 * 6 5 4 30 30 H 1.08997 * 109.47221 * 299.99487 * 6 5 4 31 31 H 1.09002 * 109.47070 * 305.00002 * 7 6 5 32 32 H 1.08996 * 109.47853 * 300.00202 * 8 7 6 33 33 H 1.09002 * 109.47153 * 60.00231 * 8 7 6 34 34 H 1.09000 * 109.47486 * 180.02562 * 9 8 7 35 35 H 1.09002 * 109.46716 * 60.00091 * 9 8 7 36 36 H 1.09002 * 109.46935 * 299.99411 * 10 9 8 37 37 H 1.09001 * 109.46812 * 179.97438 * 10 9 8 38 38 H 1.08993 * 109.47194 * 179.97438 * 11 10 9 39 39 H 1.09002 * 109.46695 * 59.99734 * 11 10 9 40 40 H 1.08992 * 109.47399 * 300.00166 * 12 7 6 41 41 H 1.09004 * 109.46724 * 60.00652 * 12 7 6 42 42 H 0.97005 * 119.99967 * 264.99851 * 13 2 1 43 43 H 0.97001 * 120.00216 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7215 1.2492 5 8 1.4702 -2.0305 1.3092 6 6 1.8836 -2.7927 2.4450 7 6 1.2152 -4.1685 2.4067 8 6 1.7208 -4.9473 1.1907 9 6 1.0530 -6.3234 1.1526 10 6 1.3965 -7.0925 2.4299 11 6 0.8909 -6.3137 3.6458 12 6 1.5583 -4.9380 3.6838 13 7 2.0183 -0.6905 -1.1962 14 6 2.1469 -0.0181 -2.3572 15 8 1.8580 1.1627 -2.4116 16 6 2.6342 -0.7082 -3.5525 17 1 2.8903 -1.7564 -3.5043 18 6 2.7685 -0.0094 -4.7588 19 7 2.4582 1.2586 -4.8172 20 14 3.3910 -0.8899 -6.2840 21 1 2.4743 -2.0094 -6.6181 22 1 3.4410 0.0643 -7.4208 23 1 4.7521 -1.4247 -6.0260 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.7517 -0.1585 2.1369 28 1 3.1264 -0.7997 1.2054 29 1 1.5917 -2.2727 3.3575 30 1 2.9666 -2.9140 2.4266 31 1 0.1345 -4.0456 2.3357 32 1 1.4766 -4.3993 0.2808 33 1 2.8016 -5.0703 1.2616 34 1 1.4136 -6.8784 0.2865 35 1 -0.0277 -6.2008 1.0818 36 1 2.4773 -7.2151 2.5006 37 1 0.9204 -8.0727 2.4028 38 1 1.1352 -6.8619 4.5557 39 1 -0.1899 -6.1912 3.5750 40 1 2.6389 -5.0609 3.7548 41 1 1.1980 -4.3831 4.5501 42 1 2.2489 -1.6318 -1.1527 43 1 2.5516 1.7428 -5.6526 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928705153.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:18 Heat of formation + Delta-G solvation = -147.229974 kcal Electronic energy + Delta-G solvation = -21034.129966 eV Core-core repulsion = 17883.730437 eV Total energy + Delta-G solvation = -3150.399529 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.14961 -39.49662 -38.22383 -35.71937 -34.49484 -32.71480 -31.61642 -31.40538 -28.16365 -27.59203 -26.12069 -23.44067 -22.85252 -22.11410 -21.09826 -20.56199 -19.23806 -17.67402 -17.33005 -16.95631 -16.46404 -16.19847 -15.89321 -15.14617 -15.07712 -14.86405 -14.81856 -14.39119 -14.25767 -14.00866 -13.35920 -13.16012 -13.06500 -12.97373 -12.82437 -12.68561 -12.64220 -12.57348 -12.08368 -12.04886 -11.97044 -11.84095 -11.78229 -11.29454 -10.93558 -10.91022 -10.87972 -10.46070 -9.82329 -9.41639 -8.27118 -6.83593 1.39566 1.43458 1.54779 2.25613 2.48897 2.71848 3.17452 3.65113 3.77922 3.86792 3.92852 4.01747 4.22334 4.26741 4.39483 4.42380 4.49697 4.53795 4.57034 4.60636 4.68125 4.71672 4.76259 4.81851 4.86168 4.88942 5.07282 5.10587 5.21799 5.28703 5.30896 5.32636 5.33878 5.40830 5.44234 5.53866 5.62396 5.91303 6.26594 6.28718 6.41091 6.88426 7.60198 8.52693 8.70186 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020975 B = 0.004047 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.620655 B = 6916.192585 C = 7971.352672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.148 3.852 3 H 0.060 0.940 4 C 0.073 3.927 5 O -0.394 6.394 6 C 0.061 3.939 7 C -0.080 4.080 8 C -0.112 4.112 9 C -0.120 4.120 10 C -0.118 4.118 11 C -0.117 4.117 12 C -0.108 4.108 13 N -0.746 5.746 14 C 0.540 3.460 15 O -0.631 6.631 16 C -0.577 4.577 17 H 0.083 0.917 18 C 0.029 3.971 19 N -0.822 5.822 20 Si 0.997 3.003 21 H -0.256 1.256 22 H -0.273 1.273 23 H -0.254 1.254 24 H 0.076 0.924 25 H 0.018 0.982 26 H 0.060 0.940 27 H 0.080 0.920 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.047 0.953 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.393 0.607 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.656 -15.871 17.126 23.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.042 3.958 3 H 0.079 0.921 4 C -0.004 4.004 5 O -0.314 6.314 6 C -0.015 4.015 7 C -0.099 4.099 8 C -0.149 4.149 9 C -0.158 4.158 10 C -0.156 4.156 11 C -0.154 4.154 12 C -0.146 4.146 13 N -0.400 5.400 14 C 0.344 3.656 15 O -0.519 6.519 16 C -0.613 4.613 17 H 0.101 0.899 18 C -0.185 4.185 19 N -0.452 5.452 20 Si 0.816 3.184 21 H -0.180 1.180 22 H -0.198 1.198 23 H -0.178 1.178 24 H 0.095 0.905 25 H 0.037 0.963 26 H 0.079 0.921 27 H 0.098 0.902 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.226 0.774 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.013 -14.921 16.892 22.562 hybrid contribution 0.387 -0.108 -0.722 0.826 sum -0.626 -15.029 16.170 22.085 Atomic orbital electron populations 1.21925 0.95838 1.01664 1.00496 1.20738 0.94456 0.95672 0.84938 0.92148 1.22629 0.97032 0.84100 0.96675 1.87899 1.70412 1.26395 1.46691 1.22707 0.98474 0.92071 0.88253 1.21111 1.00253 0.92373 0.96130 1.21497 0.99973 0.95744 0.97711 1.21538 1.00314 0.95613 0.98306 1.21545 1.01258 0.98571 0.94187 1.21502 1.00197 0.95360 0.98335 1.21485 1.01194 0.95908 0.95964 1.45827 1.71744 1.13262 1.09137 1.18546 0.77525 0.86030 0.83480 1.90537 1.57120 1.18477 1.85728 1.21408 1.47516 0.98086 0.94313 0.89909 1.26951 0.92803 0.95146 1.03643 1.70181 1.36680 1.10508 1.27806 0.85096 0.79696 0.78363 0.75266 1.18013 1.19762 1.17796 0.90469 0.96276 0.92057 0.90172 0.92857 0.92145 0.93119 0.91454 0.93403 0.92214 0.92198 0.92523 0.91869 0.91406 0.90661 0.92165 0.91439 0.90935 0.77391 0.91613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.34 9.29 71.98 0.67 -4.68 16 2 C 0.15 5.88 2.98 44.99 0.13 6.01 16 3 H 0.06 2.71 7.58 -2.39 -0.02 2.69 16 4 C 0.07 2.11 5.68 71.98 0.41 2.52 16 5 O -0.39 -11.16 8.73 -148.98 -1.30 -12.46 16 6 C 0.06 1.28 5.32 71.98 0.38 1.67 16 7 C -0.08 -1.54 2.43 -10.79 -0.03 -1.57 16 8 C -0.11 -2.39 5.10 30.59 0.16 -2.24 16 9 C -0.12 -2.21 5.92 30.60 0.18 -2.02 16 10 C -0.12 -1.70 5.92 30.60 0.18 -1.52 16 11 C -0.12 -1.53 5.92 30.58 0.18 -1.35 16 12 C -0.11 -1.54 5.20 30.58 0.16 -1.38 16 13 N -0.75 -35.28 5.06 -446.82 -2.26 -37.54 16 14 C 0.54 32.38 7.71 86.36 0.67 33.04 16 15 O -0.63 -43.16 14.68 -4.30 -0.06 -43.23 16 16 C -0.58 -33.86 9.54 24.83 0.24 -33.62 16 17 H 0.08 4.41 7.85 -2.91 -0.02 4.38 16 18 C 0.03 1.69 5.50 85.31 0.47 2.16 16 19 N -0.82 -51.50 11.83 21.84 0.26 -51.24 16 20 Si 1.00 42.05 29.56 68.60 2.03 44.08 16 21 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 22 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 23 H -0.25 -10.05 7.11 99.48 0.71 -9.35 16 24 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 25 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.06 2.25 7.56 -2.39 -0.02 2.23 16 27 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 29 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 30 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.07 1.43 8.14 -2.39 -0.02 1.42 16 32 H 0.05 1.28 7.82 -2.39 -0.02 1.26 16 33 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.39 16.95 8.36 -92.70 -0.78 16.17 16 43 H 0.27 15.55 8.29 -92.71 -0.77 14.78 16 Total: -1.00 -75.27 345.42 2.65 -72.62 By element: Atomic # 1 Polarization: 30.55 SS G_CDS: 0.19 Total: 30.74 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: 3.80 Total: -2.98 kcal Atomic # 7 Polarization: -86.78 SS G_CDS: -2.00 Total: -88.78 kcal Atomic # 8 Polarization: -54.32 SS G_CDS: -1.36 Total: -55.69 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -75.27 2.65 -72.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928705153.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.605 kcal (2) G-P(sol) polarization free energy of solvation -75.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds