Wall clock time and date at job start Mon Mar 30 2020 01:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46494 * 109.47373 * 2 1 4 4 C 1.37101 * 119.99490 * 263.88710 * 3 2 1 5 5 H 1.08004 * 119.99776 * 190.41156 * 4 3 2 6 6 C 1.38945 * 120.00455 * 10.41340 * 4 3 2 7 7 N 1.31412 * 119.99983 * 19.83897 * 6 4 3 8 8 Si 1.86793 * 120.00084 * 199.84248 * 6 4 3 9 9 H 1.48495 * 109.47326 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47489 * 120.00112 * 8 6 4 11 11 H 1.48500 * 109.47202 * 239.99683 * 8 6 4 12 12 C 1.34773 * 120.00531 * 83.88038 * 3 2 1 13 13 O 1.21298 * 119.99796 * 5.73894 * 12 3 2 14 14 C 1.50697 * 120.00464 * 185.73332 * 12 3 2 15 15 H 1.09004 * 109.53813 * 42.57847 * 14 12 3 16 16 C 1.53172 * 109.54415 * 282.30964 * 14 12 3 17 17 C 1.53093 * 109.16499 * 183.14795 * 16 14 12 18 18 O 1.42911 * 109.41323 * 57.61060 * 17 16 14 19 19 C 1.42903 * 114.09736 * 298.84504 * 18 17 16 20 20 H 1.09003 * 109.47966 * 301.17222 * 19 18 17 21 21 C 1.52998 * 109.49229 * 181.14479 * 19 18 17 22 22 C 1.53003 * 109.46786 * 60.02239 * 21 19 18 23 23 C 1.52991 * 109.47321 * 180.02562 * 21 19 18 24 24 C 1.53090 * 109.41689 * 61.15435 * 19 18 17 25 25 H 1.09002 * 109.46799 * 53.27566 * 1 2 3 26 26 H 1.09000 * 109.47267 * 173.27282 * 1 2 3 27 27 H 1.08997 * 109.47123 * 293.27347 * 1 2 3 28 28 H 1.08997 * 109.47107 * 239.99299 * 2 1 3 29 29 H 1.08999 * 109.46765 * 119.99711 * 2 1 3 30 30 H 0.97001 * 120.00123 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.52456 * 303.05873 * 16 14 12 32 32 H 1.09003 * 109.51935 * 63.18512 * 16 14 12 33 33 H 1.08998 * 109.48240 * 177.58856 * 17 16 14 34 34 H 1.09002 * 109.48497 * 297.61759 * 17 16 14 35 35 H 1.09006 * 109.46737 * 300.02994 * 21 19 18 36 36 H 1.08993 * 109.47564 * 300.00745 * 22 21 19 37 37 H 1.09006 * 109.46866 * 60.00834 * 22 21 19 38 38 H 1.08997 * 109.46880 * 179.97438 * 22 21 19 39 39 H 1.08998 * 109.47162 * 59.99883 * 23 21 19 40 40 H 1.08996 * 109.47279 * 179.97438 * 23 21 19 41 41 H 1.08997 * 109.47552 * 300.00157 * 23 21 19 42 42 H 1.08998 * 109.52340 * 62.29977 * 24 19 18 43 43 H 1.08994 * 109.52665 * 182.48784 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3661 1.9852 -1.1806 5 1 2.8810 2.9345 -1.1703 6 6 2.0562 1.3761 -2.3904 7 7 1.1187 0.4566 -2.4419 8 14 2.9720 1.8642 -3.9435 9 1 3.9713 2.9138 -3.6198 10 1 3.6651 0.6762 -4.5036 11 1 2.0074 2.3909 -4.9422 12 6 2.1258 2.0580 1.1605 13 8 1.9183 1.4930 2.2136 14 6 2.5038 3.5168 1.1498 15 1 1.9633 4.0276 0.3528 16 6 4.0117 3.6537 0.9185 17 6 4.3985 5.1334 0.9875 18 8 4.0101 5.6672 2.2550 19 6 2.6045 5.6093 2.5066 20 1 2.0735 6.1615 1.7312 21 6 2.3043 6.2309 3.8720 22 6 2.7635 7.6903 3.8801 23 6 0.7995 6.1681 4.1412 24 6 2.1458 4.1488 2.4984 25 1 -0.3633 0.6145 -0.8237 26 1 -0.3634 -1.0206 -0.1204 27 1 -0.3633 0.4060 0.9440 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 0.9026 0.0311 -3.2864 31 1 4.5500 3.1002 1.6878 32 1 4.2673 3.2550 -0.0633 33 1 5.4770 5.2333 0.8662 34 1 3.8910 5.6793 0.1921 35 1 2.8355 5.6786 4.6473 36 1 3.8354 7.7351 3.6882 37 1 2.2322 8.2426 3.1048 38 1 2.5491 8.1332 4.8527 39 1 0.4724 5.1284 4.1354 40 1 0.5857 6.6105 5.1141 41 1 0.2684 6.7203 3.3659 42 1 2.6464 3.6053 3.2997 43 1 1.0668 4.1051 2.6462 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930619031.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:52 Heat of formation + Delta-G solvation = -94.076067 kcal Electronic energy + Delta-G solvation = -22284.037547 eV Core-core repulsion = 19135.942945 eV Total energy + Delta-G solvation = -3148.094603 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.73951 -38.13624 -35.20609 -35.07000 -33.08246 -31.52960 -29.84713 -29.54111 -27.10948 -25.32760 -24.64199 -23.34992 -22.03428 -20.24009 -19.87594 -18.89960 -16.95648 -16.13475 -16.11988 -15.51815 -14.55980 -14.40557 -14.25718 -14.00180 -13.79941 -13.35314 -13.26351 -12.96216 -12.58291 -12.30501 -12.19808 -12.06101 -11.71251 -11.41195 -11.24712 -11.12986 -11.07009 -10.96542 -10.73785 -10.62860 -10.52258 -10.40313 -10.27410 -9.97763 -9.84011 -9.71671 -9.25190 -8.90793 -8.22453 -7.77997 -6.39128 -3.89975 3.05225 3.17518 3.19616 3.87700 4.00171 4.03568 4.67207 4.96800 5.03190 5.04074 5.26144 5.35772 5.45530 5.47630 5.57171 5.61802 5.69633 5.76925 5.90207 5.93399 5.96087 6.04061 6.12590 6.23092 6.34252 6.36681 6.37363 6.43119 6.52309 6.63652 6.69816 6.79217 6.84760 6.89611 7.05374 7.32511 7.44046 7.55739 7.73115 7.77687 8.42539 9.05201 9.55380 9.95852 10.58567 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021787 B = 0.005948 C = 0.005104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.872584 B = 4706.136874 C = 5484.875094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.132 3.868 3 N -0.440 5.440 4 C -0.333 4.333 5 H 0.103 0.897 6 C 0.034 3.966 7 N -0.858 5.858 8 Si 0.916 3.084 9 H -0.269 1.269 10 H -0.280 1.280 11 H -0.282 1.282 12 C 0.458 3.542 13 O -0.611 6.611 14 C -0.090 4.090 15 H 0.085 0.915 16 C -0.146 4.146 17 C 0.066 3.934 18 O -0.383 6.383 19 C 0.096 3.904 20 H 0.053 0.947 21 C -0.087 4.087 22 C -0.142 4.142 23 C -0.149 4.149 24 C -0.126 4.126 25 H 0.080 0.920 26 H 0.034 0.966 27 H 0.022 0.978 28 H 0.097 0.903 29 H 0.034 0.966 30 H 0.267 0.733 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.048 0.952 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.050 0.950 38 H 0.049 0.951 39 H 0.064 0.936 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.076 0.924 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.310 9.424 4.550 10.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.009 3.991 3 N -0.157 5.157 4 C -0.461 4.461 5 H 0.120 0.880 6 C -0.171 4.171 7 N -0.497 5.497 8 Si 0.742 3.258 9 H -0.193 1.193 10 H -0.205 1.205 11 H -0.208 1.208 12 C 0.247 3.753 13 O -0.498 6.498 14 C -0.111 4.111 15 H 0.103 0.897 16 C -0.184 4.184 17 C -0.011 4.011 18 O -0.302 6.302 19 C 0.039 3.961 20 H 0.071 0.929 21 C -0.106 4.106 22 C -0.199 4.199 23 C -0.206 4.206 24 C -0.164 4.164 25 H 0.099 0.901 26 H 0.053 0.947 27 H 0.041 0.959 28 H 0.115 0.885 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.066 0.934 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.095 0.905 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.238 9.064 5.007 10.594 hybrid contribution 0.122 -0.046 -1.311 1.318 sum 2.360 9.018 3.696 10.028 Atomic orbital electron populations 1.21901 0.96959 1.00119 1.00305 1.21229 0.94234 0.83330 1.00270 1.43834 1.55135 1.11367 1.05360 1.19815 1.36336 1.07079 0.82837 0.87975 1.25223 0.95656 0.96993 0.99207 1.70172 1.26192 1.26746 1.26583 0.86047 0.79606 0.78620 0.81484 1.19301 1.20546 1.20830 1.19930 0.83317 0.88179 0.83884 1.90506 1.57784 1.70272 1.31250 1.21026 0.96570 0.95512 0.97983 0.89730 1.22179 0.95570 0.96814 1.03854 1.22557 0.99903 0.93308 0.85349 1.87832 1.23298 1.82285 1.36785 1.22159 0.82075 0.95494 0.96420 0.92858 1.21070 0.96543 0.96600 0.96340 1.21763 1.01914 0.95321 1.00914 1.21875 0.94799 1.02618 1.01321 1.22032 1.01831 0.94567 0.97951 0.90079 0.94652 0.95895 0.88456 0.94735 0.92253 0.91378 0.89321 0.89232 0.93387 0.90553 0.91950 0.93097 0.93148 0.91746 0.92484 0.92646 0.90521 0.91028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 9.53 37.16 0.35 -2.82 16 2 C 0.13 3.29 5.29 -4.04 -0.02 3.27 16 3 N -0.44 -11.04 2.64 -114.81 -0.30 -11.35 16 4 C -0.33 -8.14 8.62 -14.93 -0.13 -8.27 16 5 H 0.10 2.34 4.91 -52.48 -0.26 2.08 16 6 C 0.03 0.81 5.01 -17.47 -0.09 0.72 16 7 N -0.86 -21.38 8.44 55.50 0.47 -20.91 16 8 Si 0.92 18.79 29.60 -169.99 -5.03 13.76 16 9 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 10 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 11 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 12 C 0.46 11.16 6.80 -10.99 -0.07 11.09 16 13 O -0.61 -16.42 15.60 5.54 0.09 -16.33 16 14 C -0.09 -1.78 1.75 -91.59 -0.16 -1.94 16 15 H 0.08 1.69 7.36 -51.93 -0.38 1.31 16 16 C -0.15 -2.60 5.12 -26.59 -0.14 -2.74 16 17 C 0.07 0.98 6.84 37.21 0.25 1.23 16 18 O -0.38 -6.07 9.73 -35.23 -0.34 -6.41 16 19 C 0.10 1.45 2.22 -26.69 -0.06 1.39 16 20 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 21 C -0.09 -1.12 2.72 -90.62 -0.25 -1.36 16 22 C -0.14 -1.60 9.05 37.16 0.34 -1.26 16 23 C -0.15 -1.73 8.84 37.15 0.33 -1.40 16 24 C -0.13 -2.25 3.77 -26.59 -0.10 -2.35 16 25 H 0.08 2.04 6.58 -51.93 -0.34 1.70 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.10 2.49 5.81 -51.93 -0.30 2.19 16 29 H 0.03 0.86 7.54 -51.93 -0.39 0.47 16 30 H 0.27 6.31 8.31 -40.82 -0.34 5.97 16 31 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.09 1.63 6.13 -51.93 -0.32 1.31 16 33 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.06 0.74 7.68 -51.93 -0.40 0.34 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.81 6.49 -51.93 -0.34 0.48 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.08 1.50 7.82 -51.93 -0.41 1.09 16 43 H 0.07 1.28 6.57 -51.93 -0.34 0.94 16 LS Contribution 327.66 15.07 4.94 4.94 Total: -1.00 -27.70 327.66 -7.19 -34.89 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -7.26 Total: 5.85 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: 0.26 Total: -4.43 kcal Atomic # 7 Polarization: -32.42 SS G_CDS: 0.17 Total: -32.26 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.26 Total: -22.74 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -27.70 -7.19 -34.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930619031.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.185 kcal (2) G-P(sol) polarization free energy of solvation -27.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds