Wall clock time and date at job start Mon Mar 30 2020 01:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46494 * 109.47373 * 2 1 4 4 C 1.37101 * 119.99490 * 263.88710 * 3 2 1 5 5 H 1.08004 * 119.99776 * 190.41156 * 4 3 2 6 6 C 1.38945 * 120.00455 * 10.41340 * 4 3 2 7 7 N 1.31412 * 119.99983 * 19.83897 * 6 4 3 8 8 Si 1.86793 * 120.00084 * 199.84248 * 6 4 3 9 9 H 1.48495 * 109.47326 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47489 * 120.00112 * 8 6 4 11 11 H 1.48500 * 109.47202 * 239.99683 * 8 6 4 12 12 C 1.34773 * 120.00531 * 83.88038 * 3 2 1 13 13 O 1.21298 * 119.99796 * 5.73894 * 12 3 2 14 14 C 1.50697 * 120.00464 * 185.73332 * 12 3 2 15 15 H 1.09004 * 109.53813 * 42.57847 * 14 12 3 16 16 C 1.53172 * 109.54415 * 282.30964 * 14 12 3 17 17 C 1.53093 * 109.16499 * 183.14795 * 16 14 12 18 18 O 1.42911 * 109.41323 * 57.61060 * 17 16 14 19 19 C 1.42903 * 114.09736 * 298.84504 * 18 17 16 20 20 H 1.09003 * 109.47966 * 301.17222 * 19 18 17 21 21 C 1.52998 * 109.49229 * 181.14479 * 19 18 17 22 22 C 1.53003 * 109.46786 * 60.02239 * 21 19 18 23 23 C 1.52991 * 109.47321 * 180.02562 * 21 19 18 24 24 C 1.53090 * 109.41689 * 61.15435 * 19 18 17 25 25 H 1.09002 * 109.46799 * 53.27566 * 1 2 3 26 26 H 1.09000 * 109.47267 * 173.27282 * 1 2 3 27 27 H 1.08997 * 109.47123 * 293.27347 * 1 2 3 28 28 H 1.08997 * 109.47107 * 239.99299 * 2 1 3 29 29 H 1.08999 * 109.46765 * 119.99711 * 2 1 3 30 30 H 0.97001 * 120.00123 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.52456 * 303.05873 * 16 14 12 32 32 H 1.09003 * 109.51935 * 63.18512 * 16 14 12 33 33 H 1.08998 * 109.48240 * 177.58856 * 17 16 14 34 34 H 1.09002 * 109.48497 * 297.61759 * 17 16 14 35 35 H 1.09006 * 109.46737 * 300.02994 * 21 19 18 36 36 H 1.08993 * 109.47564 * 300.00745 * 22 21 19 37 37 H 1.09006 * 109.46866 * 60.00834 * 22 21 19 38 38 H 1.08997 * 109.46880 * 179.97438 * 22 21 19 39 39 H 1.08998 * 109.47162 * 59.99883 * 23 21 19 40 40 H 1.08996 * 109.47279 * 179.97438 * 23 21 19 41 41 H 1.08997 * 109.47552 * 300.00157 * 23 21 19 42 42 H 1.08998 * 109.52340 * 62.29977 * 24 19 18 43 43 H 1.08994 * 109.52665 * 182.48784 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3661 1.9852 -1.1806 5 1 2.8810 2.9345 -1.1703 6 6 2.0562 1.3761 -2.3904 7 7 1.1187 0.4566 -2.4419 8 14 2.9720 1.8642 -3.9435 9 1 3.9713 2.9138 -3.6198 10 1 3.6651 0.6762 -4.5036 11 1 2.0074 2.3909 -4.9422 12 6 2.1258 2.0580 1.1605 13 8 1.9183 1.4930 2.2136 14 6 2.5038 3.5168 1.1498 15 1 1.9633 4.0276 0.3528 16 6 4.0117 3.6537 0.9185 17 6 4.3985 5.1334 0.9875 18 8 4.0101 5.6672 2.2550 19 6 2.6045 5.6093 2.5066 20 1 2.0735 6.1615 1.7312 21 6 2.3043 6.2309 3.8720 22 6 2.7635 7.6903 3.8801 23 6 0.7995 6.1681 4.1412 24 6 2.1458 4.1488 2.4984 25 1 -0.3633 0.6145 -0.8237 26 1 -0.3634 -1.0206 -0.1204 27 1 -0.3633 0.4060 0.9440 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 0.9026 0.0311 -3.2864 31 1 4.5500 3.1002 1.6878 32 1 4.2673 3.2550 -0.0633 33 1 5.4770 5.2333 0.8662 34 1 3.8910 5.6793 0.1921 35 1 2.8355 5.6786 4.6473 36 1 3.8354 7.7351 3.6882 37 1 2.2322 8.2426 3.1048 38 1 2.5491 8.1332 4.8527 39 1 0.4724 5.1284 4.1354 40 1 0.5857 6.6105 5.1141 41 1 0.2684 6.7203 3.3659 42 1 2.6464 3.6053 3.2997 43 1 1.0668 4.1051 2.6462 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930619031.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:52 Heat of formation + Delta-G solvation = -108.697335 kcal Electronic energy + Delta-G solvation = -22284.671573 eV Core-core repulsion = 19135.942945 eV Total energy + Delta-G solvation = -3148.728628 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.27741 -39.77280 -37.00279 -36.28426 -34.63063 -33.44559 -31.58307 -30.96345 -28.06201 -26.97629 -26.33906 -24.67018 -23.77411 -21.72497 -21.09053 -20.70092 -18.71312 -17.97007 -17.32241 -16.91725 -16.27335 -16.20693 -15.68199 -15.29924 -15.23109 -14.90931 -14.63567 -14.32674 -14.25732 -13.94693 -13.50628 -13.39728 -13.15222 -12.96322 -12.86436 -12.68456 -12.49437 -12.35936 -12.25725 -12.03083 -11.93354 -11.90292 -11.67510 -11.64787 -11.36117 -11.16399 -10.84565 -10.62459 -10.04163 -9.73435 -8.25443 -5.83042 1.41440 1.50738 1.61762 2.01872 2.30329 2.82747 2.96809 3.14346 3.75491 3.90902 3.93607 4.03816 4.14838 4.19819 4.34960 4.39877 4.45312 4.53729 4.65291 4.71811 4.79629 4.81751 4.85380 4.88475 4.89086 4.92065 5.03979 5.06551 5.09063 5.12856 5.21416 5.26506 5.35838 5.41358 5.46594 5.50404 5.52706 5.75861 5.85481 6.33767 6.50709 7.14859 7.63174 8.04099 8.73234 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021787 B = 0.005948 C = 0.005104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.872584 B = 4706.136874 C = 5484.875094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.132 3.868 3 N -0.449 5.449 4 C -0.353 4.353 5 H 0.116 0.884 6 C -0.005 4.005 7 N -0.881 5.881 8 Si 0.984 3.016 9 H -0.255 1.255 10 H -0.282 1.282 11 H -0.282 1.282 12 C 0.442 3.558 13 O -0.646 6.646 14 C -0.085 4.085 15 H 0.086 0.914 16 C -0.140 4.140 17 C 0.069 3.931 18 O -0.388 6.388 19 C 0.101 3.899 20 H 0.064 0.936 21 C -0.087 4.087 22 C -0.136 4.136 23 C -0.146 4.146 24 C -0.118 4.118 25 H 0.065 0.935 26 H 0.055 0.945 27 H 0.012 0.988 28 H 0.090 0.910 29 H 0.023 0.977 30 H 0.270 0.730 31 H 0.052 0.948 32 H 0.083 0.917 33 H 0.116 0.884 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.067 0.933 39 H 0.046 0.954 40 H 0.075 0.925 41 H 0.063 0.937 42 H 0.053 0.947 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.003 11.535 3.704 12.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.008 3.992 3 N -0.165 5.165 4 C -0.480 4.480 5 H 0.134 0.866 6 C -0.208 4.208 7 N -0.520 5.520 8 Si 0.808 3.192 9 H -0.178 1.178 10 H -0.208 1.208 11 H -0.208 1.208 12 C 0.233 3.767 13 O -0.536 6.536 14 C -0.106 4.106 15 H 0.104 0.896 16 C -0.178 4.178 17 C -0.007 4.007 18 O -0.307 6.307 19 C 0.043 3.957 20 H 0.082 0.918 21 C -0.105 4.105 22 C -0.193 4.193 23 C -0.204 4.204 24 C -0.156 4.156 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.031 0.969 28 H 0.108 0.892 29 H 0.042 0.958 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.102 0.898 33 H 0.134 0.866 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.065 0.935 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.932 11.186 4.159 12.289 hybrid contribution -0.140 -0.800 -1.046 1.324 sum 2.792 10.386 3.113 11.196 Atomic orbital electron populations 1.21719 0.96007 1.00982 0.98922 1.21188 0.94986 0.83763 0.99218 1.44080 1.54952 1.11404 1.06101 1.20198 1.37083 1.07965 0.82767 0.86634 1.26066 0.95908 0.96894 1.01894 1.70255 1.26821 1.27390 1.27487 0.84999 0.78405 0.78391 0.77373 1.17842 1.20816 1.20796 1.20744 0.82881 0.89951 0.83165 1.90468 1.59321 1.71477 1.32331 1.21019 0.98146 0.92320 0.99109 0.89627 1.22133 0.93599 0.99159 1.02904 1.22652 1.01697 0.90880 0.85503 1.87845 1.23557 1.81988 1.37331 1.22204 0.81887 0.93371 0.98221 0.91781 1.21095 0.97287 0.97586 0.94562 1.21711 1.01429 0.93924 1.02244 1.21861 0.93931 1.01827 1.02749 1.21968 1.01300 0.96399 0.95921 0.91650 0.92583 0.96867 0.89183 0.95833 0.92020 0.92919 0.89810 0.86628 0.91860 0.91540 0.92658 0.92314 0.91436 0.93492 0.90589 0.91800 0.92849 0.91596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.65 9.53 71.98 0.69 -4.96 16 2 C 0.13 6.70 5.29 86.38 0.46 7.16 16 3 N -0.45 -22.94 2.64 -635.55 -1.68 -24.62 16 4 C -0.35 -17.17 8.62 84.04 0.72 -16.44 16 5 H 0.12 5.17 4.91 -2.91 -0.01 5.16 16 6 C -0.01 -0.25 5.01 84.92 0.43 0.17 16 7 N -0.88 -43.74 8.44 21.66 0.18 -43.55 16 8 Si 0.98 37.50 29.60 68.60 2.03 39.53 16 9 H -0.25 -9.09 7.11 99.48 0.71 -8.39 16 10 H -0.28 -10.84 7.11 99.48 0.71 -10.14 16 11 H -0.28 -10.71 7.11 99.48 0.71 -10.01 16 12 C 0.44 22.09 6.80 87.66 0.60 22.69 16 13 O -0.65 -36.02 15.60 -3.09 -0.05 -36.07 16 14 C -0.08 -3.38 1.75 -11.42 -0.02 -3.40 16 15 H 0.09 3.38 7.36 -2.38 -0.02 3.37 16 16 C -0.14 -4.87 5.12 30.68 0.16 -4.72 16 17 C 0.07 1.90 6.84 72.01 0.49 2.39 16 18 O -0.39 -11.52 9.73 -148.98 -1.45 -12.97 16 19 C 0.10 2.90 2.22 30.62 0.07 2.96 16 20 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 21 C -0.09 -2.09 2.72 -10.80 -0.03 -2.12 16 22 C -0.14 -2.69 9.05 71.98 0.65 -2.04 16 23 C -0.15 -3.17 8.84 71.98 0.64 -2.53 16 24 C -0.12 -4.24 3.77 30.69 0.12 -4.12 16 25 H 0.06 3.33 6.58 -2.39 -0.02 3.32 16 26 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.09 4.69 5.81 -2.39 -0.01 4.68 16 29 H 0.02 1.22 7.54 -2.39 -0.02 1.20 16 30 H 0.27 12.65 8.31 -92.71 -0.77 11.88 16 31 H 0.05 1.97 8.14 -2.39 -0.02 1.96 16 32 H 0.08 2.99 6.13 -2.39 -0.01 2.97 16 33 H 0.12 2.60 8.14 -2.39 -0.02 2.58 16 34 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 36 H 0.05 1.18 7.68 -2.39 -0.02 1.16 16 37 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 38 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.05 1.17 6.49 -2.39 -0.02 1.15 16 40 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.05 2.15 7.82 -2.39 -0.02 2.13 16 43 H 0.07 2.41 6.57 -2.39 -0.02 2.39 16 Total: -1.00 -59.54 327.66 4.97 -54.57 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: 0.97 Total: 28.08 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: 4.96 Total: -4.97 kcal Atomic # 7 Polarization: -66.68 SS G_CDS: -1.49 Total: -68.17 kcal Atomic # 8 Polarization: -47.54 SS G_CDS: -1.50 Total: -49.04 kcal Atomic # 14 Polarization: 37.50 SS G_CDS: 2.03 Total: 39.53 kcal Total: -59.54 4.97 -54.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930619031.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.130 kcal (2) G-P(sol) polarization free energy of solvation -59.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds