Wall clock time and date at job start Mon Mar 30 2020 01:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46499 * 109.47176 * 2 1 4 4 C 1.37103 * 119.99934 * 274.90363 * 3 2 1 5 5 H 1.07998 * 119.99926 * 184.11278 * 4 3 2 6 6 C 1.38947 * 119.99775 * 4.11272 * 4 3 2 7 7 N 1.31413 * 120.00312 * 17.09824 * 6 4 3 8 8 Si 1.86802 * 119.99729 * 197.10268 * 6 4 3 9 9 H 1.48495 * 109.47263 * 90.00186 * 8 6 4 10 10 H 1.48503 * 109.46791 * 209.99705 * 8 6 4 11 11 H 1.48498 * 109.46965 * 329.99739 * 8 6 4 12 12 C 1.34776 * 120.00143 * 94.90586 * 3 2 1 13 13 O 1.21288 * 119.99763 * 4.71744 * 12 3 2 14 14 C 1.50701 * 119.99947 * 184.71678 * 12 3 2 15 15 H 1.08996 * 109.54477 * 51.08845 * 14 12 3 16 16 C 1.53175 * 109.54323 * 290.91327 * 14 12 3 17 17 C 1.53290 * 109.06620 * 297.03366 * 16 14 12 18 18 O 1.42901 * 109.45552 * 302.44562 * 17 16 14 19 19 C 1.42896 * 114.10081 * 61.15846 * 18 17 16 20 20 H 1.08997 * 109.48177 * 58.82097 * 19 18 17 21 21 C 1.52998 * 109.48243 * 178.85958 * 19 18 17 22 22 C 1.52998 * 109.47030 * 299.94087 * 21 19 18 23 23 C 1.53001 * 109.47380 * 59.94247 * 21 19 18 24 24 C 1.53099 * 109.41491 * 298.83925 * 19 18 17 25 25 H 1.09005 * 109.47156 * 171.70060 * 1 2 3 26 26 H 1.08999 * 109.47315 * 51.70119 * 1 2 3 27 27 H 1.08999 * 109.47410 * 291.69939 * 1 2 3 28 28 H 1.09004 * 109.47330 * 120.00112 * 2 1 3 29 29 H 1.09000 * 109.47272 * 239.99756 * 2 1 3 30 30 H 0.97001 * 119.99860 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.52222 * 57.02023 * 16 14 12 32 32 H 1.09001 * 109.52603 * 177.21002 * 16 14 12 33 33 H 1.08995 * 109.45645 * 182.44707 * 17 16 14 34 34 H 1.09000 * 109.46457 * 62.44343 * 17 16 14 35 35 H 1.09006 * 109.47342 * 179.97438 * 21 19 18 36 36 H 1.09002 * 109.47412 * 60.00164 * 22 21 19 37 37 H 1.09000 * 109.47204 * 179.97438 * 22 21 19 38 38 H 1.08998 * 109.47149 * 299.99995 * 22 21 19 39 39 H 1.08997 * 109.47105 * 59.99896 * 23 21 19 40 40 H 1.09000 * 109.47294 * 180.02562 * 23 21 19 41 41 H 1.09002 * 109.46852 * 299.99708 * 23 21 19 42 42 H 1.09004 * 109.52332 * 297.70248 * 24 19 18 43 43 H 1.09001 * 109.56991 * 177.54359 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1511 2.0613 -1.1830 5 1 2.5733 3.0553 -1.1899 6 6 1.7425 1.4717 -2.3730 7 7 0.9373 0.4334 -2.3493 8 14 2.3378 2.1549 -4.0065 9 1 3.6017 1.4790 -4.3946 10 1 1.3076 1.9142 -5.0486 11 1 2.5772 3.6145 -3.8747 12 6 2.3370 1.9833 1.1629 13 8 2.3016 1.3558 2.2003 14 6 2.7375 3.4361 1.1742 15 1 1.9926 4.0238 0.6378 16 6 4.1018 3.5968 0.4968 17 6 5.1553 2.8302 1.3044 18 8 5.1724 3.3172 2.6477 19 6 3.9362 3.1503 3.3447 20 1 3.6747 2.0925 3.3728 21 6 4.0805 3.6787 4.7733 22 6 5.1812 2.8999 5.4964 23 6 4.4482 5.1633 4.7334 24 6 2.8348 3.9295 2.6211 25 1 -0.3634 -1.0169 -0.1483 26 1 -0.3634 0.6369 -0.8065 27 1 -0.3634 0.3800 0.9548 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 0.6517 0.0221 -3.1801 31 1 4.0548 3.1974 -0.5163 32 1 4.3686 4.6531 0.4609 33 1 6.1363 2.9760 0.8523 34 1 4.9099 1.7682 1.3058 35 1 3.1372 3.5517 5.3047 36 1 6.1246 3.0263 4.9652 37 1 5.2843 3.2766 6.5140 38 1 4.9192 1.8422 5.5249 39 1 3.6641 5.7181 4.2183 40 1 4.5515 5.5396 5.7511 41 1 5.3917 5.2897 4.2022 42 1 3.0759 4.9925 2.6280 43 1 1.8821 3.7687 3.1256 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930619035.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:58 Heat of formation + Delta-G solvation = -80.442418 kcal Electronic energy + Delta-G solvation = -22782.607401 eV Core-core repulsion = 19635.103998 eV Total energy + Delta-G solvation = -3147.503403 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.93831 -37.81398 -35.11815 -34.84522 -33.02025 -31.51734 -29.80263 -29.27682 -26.91863 -25.26597 -24.67569 -23.17465 -22.23803 -20.40649 -19.53721 -18.80814 -16.74717 -16.05047 -15.77200 -15.30887 -14.49974 -14.41066 -14.32141 -13.90672 -13.77257 -13.30693 -13.13073 -12.85660 -12.47419 -12.16616 -11.95996 -11.76925 -11.60221 -11.53397 -11.24433 -11.20766 -10.98393 -10.95376 -10.61756 -10.55506 -10.36471 -10.32324 -10.08512 -9.95825 -9.75105 -9.65432 -8.87839 -8.81904 -8.08415 -7.79191 -6.34811 -3.91157 3.05357 3.16236 3.17161 3.86206 4.01315 4.33977 4.77755 4.99452 5.10027 5.27407 5.35866 5.50419 5.53971 5.59434 5.77774 5.88440 5.91847 5.97050 6.07338 6.13373 6.15217 6.27171 6.31539 6.38744 6.47976 6.49708 6.54984 6.58528 6.63377 6.69312 6.75482 6.82495 6.87371 6.93290 7.10127 7.31301 7.47018 7.73120 7.85747 7.87139 8.42350 9.03134 9.52750 9.92974 10.56142 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.027138 B = 0.006144 C = 0.005442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.497018 B = 4556.101181 C = 5143.783419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.134 3.866 3 N -0.438 5.438 4 C -0.334 4.334 5 H 0.108 0.892 6 C 0.032 3.968 7 N -0.859 5.859 8 Si 0.918 3.082 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.270 1.270 12 C 0.455 3.545 13 O -0.610 6.610 14 C -0.093 4.093 15 H 0.085 0.915 16 C -0.152 4.152 17 C 0.067 3.933 18 O -0.386 6.386 19 C 0.084 3.916 20 H 0.098 0.902 21 C -0.087 4.087 22 C -0.141 4.141 23 C -0.143 4.143 24 C -0.123 4.123 25 H 0.033 0.967 26 H 0.090 0.910 27 H 0.012 0.988 28 H 0.038 0.962 29 H 0.093 0.907 30 H 0.266 0.734 31 H 0.097 0.903 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.050 0.950 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.046 0.954 38 H 0.051 0.949 39 H 0.053 0.947 40 H 0.044 0.956 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.779 5.485 5.447 9.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.012 3.988 3 N -0.155 5.155 4 C -0.461 4.461 5 H 0.125 0.875 6 C -0.172 4.172 7 N -0.498 5.498 8 Si 0.745 3.255 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.195 1.195 12 C 0.243 3.757 13 O -0.498 6.498 14 C -0.114 4.114 15 H 0.103 0.897 16 C -0.190 4.190 17 C -0.010 4.010 18 O -0.305 6.305 19 C 0.027 3.973 20 H 0.115 0.885 21 C -0.105 4.105 22 C -0.198 4.198 23 C -0.201 4.201 24 C -0.161 4.161 25 H 0.052 0.948 26 H 0.108 0.892 27 H 0.032 0.968 28 H 0.056 0.944 29 H 0.111 0.889 30 H 0.077 0.923 31 H 0.116 0.884 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.804 5.103 5.845 9.126 hybrid contribution -0.224 0.233 -1.275 1.315 sum 4.581 5.336 4.571 8.387 Atomic orbital electron populations 1.22013 0.96705 1.00446 0.99706 1.21270 0.94453 0.83038 1.00083 1.43886 1.54680 1.11846 1.05090 1.19923 1.40858 1.01856 0.83494 0.87475 1.25248 0.95439 0.96817 0.99688 1.70302 1.29388 1.22716 1.27415 0.86054 0.78668 0.79243 0.81515 1.20279 1.20929 1.19484 1.19914 0.83581 0.88666 0.83492 1.90416 1.60741 1.66529 1.32102 1.21052 0.97970 0.95869 0.96518 0.89715 1.22346 0.94308 1.00813 1.01557 1.22471 0.98630 0.97520 0.82371 1.87742 1.34297 1.83390 1.25095 1.22488 0.83279 1.01675 0.89883 0.88473 1.21140 0.99078 0.95512 0.94805 1.21736 0.99308 0.99772 0.98995 1.21817 1.02081 0.95585 1.00570 1.21967 0.99769 0.99154 0.95205 0.94839 0.89184 0.96849 0.94366 0.88874 0.92293 0.88433 0.91784 0.89848 0.93196 0.90705 0.92081 0.93524 0.92940 0.92763 0.93671 0.92054 0.91795 0.91396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 9.31 37.15 0.35 -2.71 16 2 C 0.13 3.29 5.49 -4.05 -0.02 3.26 16 3 N -0.44 -10.74 2.63 -114.82 -0.30 -11.04 16 4 C -0.33 -8.01 8.35 -14.93 -0.12 -8.13 16 5 H 0.11 2.42 4.69 -52.49 -0.25 2.17 16 6 C 0.03 0.76 5.17 -17.47 -0.09 0.67 16 7 N -0.86 -21.04 7.56 55.50 0.42 -20.62 16 8 Si 0.92 18.64 29.59 -169.99 -5.03 13.61 16 9 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 10 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 11 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 12 C 0.45 10.66 5.73 -10.99 -0.06 10.60 16 13 O -0.61 -15.46 13.08 5.55 0.07 -15.38 16 14 C -0.09 -1.83 2.19 -91.59 -0.20 -2.03 16 15 H 0.08 1.67 7.70 -51.93 -0.40 1.27 16 16 C -0.15 -2.72 5.24 -26.49 -0.14 -2.86 16 17 C 0.07 1.19 6.62 37.31 0.25 1.43 16 18 O -0.39 -6.91 9.06 -35.23 -0.32 -7.23 16 19 C 0.08 1.49 2.09 -26.68 -0.06 1.44 16 20 H 0.10 2.06 5.50 -51.93 -0.29 1.78 16 21 C -0.09 -1.28 2.81 -90.62 -0.25 -1.54 16 22 C -0.14 -1.93 9.05 37.16 0.34 -1.59 16 23 C -0.14 -1.88 8.70 37.16 0.32 -1.55 16 24 C -0.12 -2.18 4.30 -26.59 -0.11 -2.30 16 25 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.09 2.27 6.15 -51.93 -0.32 1.95 16 27 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.04 0.94 7.23 -51.93 -0.38 0.57 16 29 H 0.09 2.36 6.06 -51.93 -0.31 2.05 16 30 H 0.27 6.24 8.31 -40.82 -0.34 5.90 16 31 H 0.10 1.83 5.37 -51.93 -0.28 1.55 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.05 1.00 7.38 -51.93 -0.38 0.62 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.06 0.87 7.68 -51.93 -0.40 0.47 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.05 0.69 6.38 -51.93 -0.33 0.36 16 40 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.84 7.68 -51.93 -0.40 0.45 16 42 H 0.06 1.02 6.31 -51.93 -0.33 0.69 16 43 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 LS Contribution 317.99 15.07 4.79 4.79 Total: -1.00 -26.23 317.99 -7.18 -33.41 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -7.00 Total: 7.76 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: 0.19 Total: -5.30 kcal Atomic # 7 Polarization: -31.78 SS G_CDS: 0.12 Total: -31.66 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.25 Total: -22.61 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -26.23 -7.18 -33.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930619035.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.033 kcal (2) G-P(sol) polarization free energy of solvation -26.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds