Wall clock time and date at job start Mon Mar 30 2020 01:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46505 * 109.46819 * 2 1 4 4 C 1.37096 * 119.99569 * 59.43289 * 3 2 1 5 5 H 1.08006 * 119.99330 * 197.84028 * 4 3 2 6 6 C 1.38951 * 120.01023 * 17.83764 * 4 3 2 7 7 N 1.31411 * 119.99268 * 15.33320 * 6 4 3 8 8 Si 1.86792 * 120.00497 * 195.33844 * 6 4 3 9 9 H 1.48495 * 109.47212 * 89.99663 * 8 6 4 10 10 H 1.48504 * 109.47111 * 209.99887 * 8 6 4 11 11 H 1.48501 * 109.46962 * 329.99588 * 8 6 4 12 12 C 1.34774 * 120.00046 * 239.42530 * 3 2 1 13 13 O 1.21296 * 120.00052 * 182.11389 * 12 3 2 14 14 C 1.50700 * 120.00092 * 2.11168 * 12 3 2 15 15 O 1.42903 * 108.79068 * 314.35834 * 14 12 3 16 16 C 1.42906 * 114.00243 * 304.18596 * 15 14 12 17 17 C 1.45536 * 108.89597 * 72.91489 * 14 12 3 18 18 C 1.54241 * 112.32919 * 182.73847 * 17 14 12 19 19 C 1.50555 * 108.48506 * 279.88437 * 18 17 14 20 20 C 1.54068 * 112.41253 * 94.26495 * 19 18 17 21 21 C 1.54062 * 112.81631 * 318.27814 * 20 19 18 22 22 C 1.50471 * 112.50275 * 318.28675 * 21 20 19 23 23 H 1.08993 * 109.46572 * 59.22974 * 1 2 3 24 24 H 1.08994 * 109.46580 * 179.22714 * 1 2 3 25 25 H 1.08991 * 109.47018 * 299.22725 * 1 2 3 26 26 H 1.08995 * 109.47574 * 240.00521 * 2 1 3 27 27 H 1.09006 * 109.47101 * 119.99929 * 2 1 3 28 28 H 0.96997 * 120.00067 * 179.97438 * 7 6 4 29 29 H 1.08995 * 109.46861 * 304.66787 * 16 15 14 30 30 H 1.09001 * 109.47049 * 64.66718 * 16 15 14 31 31 H 1.09000 * 109.47094 * 184.66468 * 16 15 14 32 32 H 1.09006 * 108.89327 * 303.44621 * 17 14 12 33 33 H 1.08997 * 108.89741 * 62.03088 * 17 14 12 34 34 H 1.09005 * 109.62749 * 39.68145 * 18 17 14 35 35 H 1.09001 * 109.63067 * 160.25420 * 18 17 14 36 36 H 1.08996 * 108.92105 * 333.51075 * 19 18 17 37 37 H 1.08996 * 108.83903 * 214.96467 * 19 18 17 38 38 H 1.09009 * 108.80891 * 197.42244 * 20 19 18 39 39 H 1.08996 * 108.81071 * 79.14239 * 20 19 18 40 40 H 1.09006 * 108.87604 * 197.50859 * 21 20 19 41 41 H 1.09001 * 108.87616 * 79.06942 * 21 20 19 42 42 H 1.09011 * 109.62477 * 334.44754 * 22 21 20 43 43 H 1.08995 * 109.79328 * 213.95941 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 1.6775 2.2287 1.0223 5 1 1.7810 3.2964 0.8959 6 6 1.1987 1.7143 2.2211 7 7 1.3504 0.4382 2.4955 8 14 0.3395 2.8366 3.4423 9 1 -1.1174 2.8567 3.1559 10 1 0.5661 2.3337 4.8211 11 1 0.8869 4.2117 3.3208 12 6 2.8027 1.8188 -1.0049 13 8 3.2383 2.9506 -0.9855 14 6 3.1385 0.9017 -2.1526 15 8 3.5100 -0.3747 -1.6285 16 6 4.5840 -0.3263 -0.6870 17 6 1.9584 0.7423 -2.9893 18 6 2.1952 -0.2388 -4.1557 19 6 2.9290 0.4892 -5.2504 20 6 4.4554 0.3004 -5.1607 21 6 4.9840 0.3846 -3.7161 22 6 4.3344 1.4902 -2.9287 23 1 -0.3632 0.5257 -0.8830 24 1 -0.3632 -1.0275 -0.0139 25 1 -0.3633 0.5017 0.8968 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.0166 0.0791 3.3324 29 1 5.4422 0.1698 -1.1402 30 1 4.2681 0.2288 0.1963 31 1 4.8608 -1.3405 -0.3990 32 1 1.1382 0.3697 -2.3756 33 1 1.6805 1.7143 -3.3966 34 1 2.7935 -1.0817 -3.8094 35 1 1.2374 -0.5968 -4.5334 36 1 2.7006 1.5528 -5.1822 37 1 2.5834 0.1159 -6.2143 38 1 4.9407 1.0723 -5.7581 39 1 4.7137 -0.6748 -5.5733 40 1 6.0600 0.5565 -3.7437 41 1 4.7932 -0.5644 -3.2149 42 1 3.9833 2.2665 -3.6087 43 1 5.0526 1.9151 -2.2275 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930619890.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:28 Heat of formation + Delta-G solvation = -68.112618 kcal Electronic energy + Delta-G solvation = -23479.644475 eV Core-core repulsion = 20332.675732 eV Total energy + Delta-G solvation = -3146.968743 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.56713 -37.42168 -35.80878 -35.09818 -32.36073 -31.35060 -30.90302 -29.27669 -26.36823 -25.72091 -24.36163 -23.99547 -21.83072 -20.57947 -19.15922 -18.74117 -16.84886 -16.58587 -16.02117 -15.16224 -15.11356 -14.76732 -14.18103 -13.78636 -13.67150 -13.21711 -13.04532 -12.80917 -12.61831 -12.45733 -12.03970 -11.76183 -11.61906 -11.52537 -11.32988 -11.00158 -10.77449 -10.68363 -10.55223 -10.40452 -10.34874 -10.26874 -10.09267 -10.03611 -9.97083 -9.81983 -9.02633 -8.93901 -8.02419 -7.58900 -6.13158 -3.82750 3.15087 3.25655 3.30688 3.78409 4.11381 4.34767 4.82034 4.97349 5.00725 5.14240 5.20262 5.39855 5.52499 5.60052 5.62111 5.69458 5.83783 5.86418 5.98642 6.03313 6.10563 6.22591 6.30066 6.37228 6.40005 6.42431 6.45225 6.47667 6.54830 6.64355 6.65419 6.69078 6.77225 6.81367 7.01744 7.43398 7.53481 7.59161 7.81155 8.17612 8.58409 9.22741 9.51812 10.04166 10.72485 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.031304 B = 0.006480 C = 0.006314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.226200 B = 4319.934937 C = 4433.488962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.077 3.923 3 N -0.424 5.424 4 C -0.304 4.304 5 H 0.097 0.903 6 C 0.034 3.966 7 N -0.871 5.871 8 Si 0.920 3.080 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.270 1.270 12 C 0.416 3.584 13 O -0.593 6.593 14 C 0.122 3.878 15 O -0.366 6.366 16 C 0.023 3.977 17 C -0.115 4.115 18 C -0.111 4.111 19 C -0.119 4.119 20 C -0.111 4.111 21 C -0.127 4.127 22 C -0.117 4.117 23 H 0.027 0.973 24 H 0.037 0.963 25 H 0.066 0.934 26 H 0.085 0.915 27 H 0.111 0.889 28 H 0.265 0.735 29 H 0.039 0.961 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.053 0.947 38 H 0.051 0.949 39 H 0.054 0.946 40 H 0.052 0.948 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.527 -5.170 -10.194 11.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.046 4.046 3 N -0.141 5.141 4 C -0.432 4.432 5 H 0.114 0.886 6 C -0.168 4.168 7 N -0.511 5.511 8 Si 0.747 3.253 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.195 1.195 12 C 0.203 3.797 13 O -0.479 6.479 14 C 0.080 3.920 15 O -0.285 6.285 16 C -0.074 4.074 17 C -0.152 4.152 18 C -0.148 4.148 19 C -0.157 4.157 20 C -0.149 4.149 21 C -0.164 4.164 22 C -0.156 4.156 23 H 0.046 0.954 24 H 0.056 0.944 25 H 0.085 0.915 26 H 0.103 0.897 27 H 0.129 0.871 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.100 0.900 42 H 0.090 0.910 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.579 -4.925 -10.042 11.478 hybrid contribution -0.440 0.716 0.886 1.221 sum 2.139 -4.209 -9.156 10.302 Atomic orbital electron populations 1.21955 0.98062 0.99091 1.01143 1.22434 0.93552 0.83910 1.04661 1.43795 1.40337 1.11187 1.18803 1.19668 1.40474 0.91197 0.91895 0.88551 1.25209 0.97988 0.96210 0.97438 1.69866 1.44482 1.12575 1.24142 0.86020 0.79617 0.80401 0.79296 1.20429 1.20990 1.19485 1.20591 0.83657 0.89222 0.86228 1.90505 1.56752 1.20863 1.79783 1.20322 0.95175 0.83532 0.93012 1.87870 1.52147 1.28659 1.59829 1.22780 0.89426 1.02073 0.93095 1.20662 0.97061 1.00398 0.97101 1.21241 0.99963 0.98856 0.94774 1.21390 0.95064 1.00833 0.98368 1.21867 0.95475 1.00800 0.96754 1.21388 0.98770 1.00970 0.95291 1.21544 0.97340 0.97853 0.98829 0.95409 0.94372 0.91467 0.89748 0.87103 0.92409 0.94257 0.92404 0.90274 0.90238 0.90882 0.90426 0.92237 0.92219 0.92820 0.92970 0.92745 0.92940 0.90006 0.91011 0.91089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 9.25 37.16 0.34 -2.77 16 2 C 0.08 1.74 3.71 -4.04 -0.01 1.73 16 3 N -0.42 -10.74 2.41 -114.80 -0.28 -11.01 16 4 C -0.30 -8.41 8.95 -14.93 -0.13 -8.55 16 5 H 0.10 2.84 7.37 -52.48 -0.39 2.46 16 6 C 0.03 0.89 3.91 -17.47 -0.07 0.82 16 7 N -0.87 -22.49 9.44 55.50 0.52 -21.97 16 8 Si 0.92 20.72 29.58 -169.99 -5.03 15.69 16 9 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 12 C 0.42 10.14 5.03 -10.99 -0.06 10.08 16 13 O -0.59 -16.53 15.49 5.54 0.09 -16.44 16 14 C 0.12 2.31 0.28 -94.64 -0.03 2.29 16 15 O -0.37 -6.61 4.81 -35.23 -0.17 -6.78 16 16 C 0.02 0.40 9.36 101.05 0.95 1.34 16 17 C -0.11 -1.96 3.92 -29.60 -0.12 -2.08 16 18 C -0.11 -1.51 5.57 -27.30 -0.15 -1.67 16 19 C -0.12 -1.47 5.32 -27.40 -0.15 -1.61 16 20 C -0.11 -1.34 5.85 -25.62 -0.15 -1.49 16 21 C -0.13 -1.77 4.60 -27.44 -0.13 -1.89 16 22 C -0.12 -2.03 3.52 -27.35 -0.10 -2.12 16 23 H 0.03 0.56 7.36 -51.93 -0.38 0.18 16 24 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.07 1.60 5.82 -51.93 -0.30 1.30 16 26 H 0.08 1.76 3.46 -52.11 -0.18 1.58 16 27 H 0.11 2.77 5.80 -51.93 -0.30 2.47 16 28 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 29 H 0.04 0.64 6.21 -51.93 -0.32 0.32 16 30 H 0.06 1.24 6.57 -51.93 -0.34 0.90 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.08 1.45 5.06 -51.93 -0.26 1.19 16 33 H 0.07 1.27 7.46 -51.93 -0.39 0.88 16 34 H 0.08 1.10 6.23 -51.93 -0.32 0.77 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.78 6.63 -51.93 -0.34 0.43 16 37 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.05 0.59 8.14 -51.92 -0.42 0.16 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 1.19 5.08 -51.93 -0.26 0.92 16 42 H 0.07 1.24 6.98 -51.92 -0.36 0.88 16 43 H 0.07 1.36 6.98 -51.93 -0.36 0.99 16 LS Contribution 304.61 15.07 4.59 4.59 Total: -1.00 -29.04 304.61 -6.69 -35.73 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -6.62 Total: 6.10 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: 0.20 Total: -5.91 kcal Atomic # 7 Polarization: -33.23 SS G_CDS: 0.25 Total: -32.98 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.08 Total: -23.22 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.03 Total: 15.69 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.04 -6.69 -35.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930619890.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.382 kcal (2) G-P(sol) polarization free energy of solvation -29.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds