Wall clock time and date at job start Mon Mar 30 2020 01:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46505 * 109.46819 * 2 1 4 4 C 1.37096 * 119.99569 * 59.43289 * 3 2 1 5 5 H 1.08006 * 119.99330 * 197.84028 * 4 3 2 6 6 C 1.38951 * 120.01023 * 17.83764 * 4 3 2 7 7 N 1.31411 * 119.99268 * 15.33320 * 6 4 3 8 8 Si 1.86792 * 120.00497 * 195.33844 * 6 4 3 9 9 H 1.48495 * 109.47212 * 89.99663 * 8 6 4 10 10 H 1.48504 * 109.47111 * 209.99887 * 8 6 4 11 11 H 1.48501 * 109.46962 * 329.99588 * 8 6 4 12 12 C 1.34774 * 120.00046 * 239.42530 * 3 2 1 13 13 O 1.21296 * 120.00052 * 182.11389 * 12 3 2 14 14 C 1.50700 * 120.00092 * 2.11168 * 12 3 2 15 15 O 1.42903 * 108.79068 * 314.35834 * 14 12 3 16 16 C 1.42906 * 114.00243 * 304.18596 * 15 14 12 17 17 C 1.45536 * 108.89597 * 72.91489 * 14 12 3 18 18 C 1.54241 * 112.32919 * 182.73847 * 17 14 12 19 19 C 1.50555 * 108.48506 * 279.88437 * 18 17 14 20 20 C 1.54068 * 112.41253 * 94.26495 * 19 18 17 21 21 C 1.54062 * 112.81631 * 318.27814 * 20 19 18 22 22 C 1.50471 * 112.50275 * 318.28675 * 21 20 19 23 23 H 1.08993 * 109.46572 * 59.22974 * 1 2 3 24 24 H 1.08994 * 109.46580 * 179.22714 * 1 2 3 25 25 H 1.08991 * 109.47018 * 299.22725 * 1 2 3 26 26 H 1.08995 * 109.47574 * 240.00521 * 2 1 3 27 27 H 1.09006 * 109.47101 * 119.99929 * 2 1 3 28 28 H 0.96997 * 120.00067 * 179.97438 * 7 6 4 29 29 H 1.08995 * 109.46861 * 304.66787 * 16 15 14 30 30 H 1.09001 * 109.47049 * 64.66718 * 16 15 14 31 31 H 1.09000 * 109.47094 * 184.66468 * 16 15 14 32 32 H 1.09006 * 108.89327 * 303.44621 * 17 14 12 33 33 H 1.08997 * 108.89741 * 62.03088 * 17 14 12 34 34 H 1.09005 * 109.62749 * 39.68145 * 18 17 14 35 35 H 1.09001 * 109.63067 * 160.25420 * 18 17 14 36 36 H 1.08996 * 108.92105 * 333.51075 * 19 18 17 37 37 H 1.08996 * 108.83903 * 214.96467 * 19 18 17 38 38 H 1.09009 * 108.80891 * 197.42244 * 20 19 18 39 39 H 1.08996 * 108.81071 * 79.14239 * 20 19 18 40 40 H 1.09006 * 108.87604 * 197.50859 * 21 20 19 41 41 H 1.09001 * 108.87616 * 79.06942 * 21 20 19 42 42 H 1.09011 * 109.62477 * 334.44754 * 22 21 20 43 43 H 1.08995 * 109.79328 * 213.95941 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 1.6775 2.2287 1.0223 5 1 1.7810 3.2964 0.8959 6 6 1.1987 1.7143 2.2211 7 7 1.3504 0.4382 2.4955 8 14 0.3395 2.8366 3.4423 9 1 -1.1174 2.8567 3.1559 10 1 0.5661 2.3337 4.8211 11 1 0.8869 4.2117 3.3208 12 6 2.8027 1.8188 -1.0049 13 8 3.2383 2.9506 -0.9855 14 6 3.1385 0.9017 -2.1526 15 8 3.5100 -0.3747 -1.6285 16 6 4.5840 -0.3263 -0.6870 17 6 1.9584 0.7423 -2.9893 18 6 2.1952 -0.2388 -4.1557 19 6 2.9290 0.4892 -5.2504 20 6 4.4554 0.3004 -5.1607 21 6 4.9840 0.3846 -3.7161 22 6 4.3344 1.4902 -2.9287 23 1 -0.3632 0.5257 -0.8830 24 1 -0.3632 -1.0275 -0.0139 25 1 -0.3633 0.5017 0.8968 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.0166 0.0791 3.3324 29 1 5.4422 0.1698 -1.1402 30 1 4.2681 0.2288 0.1963 31 1 4.8608 -1.3405 -0.3990 32 1 1.1382 0.3697 -2.3756 33 1 1.6805 1.7143 -3.3966 34 1 2.7935 -1.0817 -3.8094 35 1 1.2374 -0.5968 -4.5334 36 1 2.7006 1.5528 -5.1822 37 1 2.5834 0.1159 -6.2143 38 1 4.9407 1.0723 -5.7581 39 1 4.7137 -0.6748 -5.5733 40 1 6.0600 0.5565 -3.7437 41 1 4.7932 -0.5644 -3.2149 42 1 3.9833 2.2665 -3.6087 43 1 5.0526 1.9151 -2.2275 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930619890.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:28 Heat of formation + Delta-G solvation = -84.845378 kcal Electronic energy + Delta-G solvation = -23480.370062 eV Core-core repulsion = 20332.675732 eV Total energy + Delta-G solvation = -3147.694330 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.15301 -39.11585 -37.32018 -36.90761 -33.92800 -33.04655 -32.23140 -31.13649 -27.80230 -27.53355 -25.62703 -25.45773 -23.64613 -22.12146 -20.62397 -20.01059 -18.82346 -18.34140 -17.45018 -16.96086 -16.60866 -16.26363 -15.86663 -15.39026 -15.07032 -14.94418 -14.44883 -14.34602 -14.13115 -13.83967 -13.50876 -13.46426 -13.32437 -12.97666 -12.77151 -12.72020 -12.53797 -12.23521 -12.14806 -12.09723 -11.86448 -11.79364 -11.49982 -11.36069 -11.18339 -11.03296 -10.99035 -10.64720 -9.89196 -9.58568 -8.13779 -5.93497 1.32192 1.38320 1.48902 1.92891 2.25092 2.74943 3.10192 3.14706 3.63348 3.83977 3.94091 4.16886 4.26455 4.32882 4.40641 4.42352 4.47457 4.56984 4.61726 4.71150 4.81946 4.84489 4.92260 4.94818 4.98315 5.01844 5.13154 5.18441 5.22502 5.34254 5.36662 5.39493 5.42928 5.46139 5.55942 5.65442 5.69010 5.83342 5.99830 6.19123 6.58289 7.19831 7.54666 8.06777 8.68394 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.031304 B = 0.006480 C = 0.006314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.226200 B = 4319.934937 C = 4433.488962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.085 3.915 3 N -0.432 5.432 4 C -0.345 4.345 5 H 0.063 0.937 6 C 0.012 3.988 7 N -0.875 5.875 8 Si 0.977 3.023 9 H -0.268 1.268 10 H -0.271 1.271 11 H -0.280 1.280 12 C 0.402 3.598 13 O -0.640 6.640 14 C 0.135 3.865 15 O -0.358 6.358 16 C 0.026 3.974 17 C -0.116 4.116 18 C -0.100 4.100 19 C -0.120 4.120 20 C -0.109 4.109 21 C -0.122 4.122 22 C -0.111 4.111 23 H 0.032 0.968 24 H 0.065 0.935 25 H 0.040 0.960 26 H 0.105 0.895 27 H 0.090 0.910 28 H 0.271 0.729 29 H 0.050 0.950 30 H 0.013 0.987 31 H 0.112 0.888 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.047 0.953 37 H 0.079 0.921 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.322 -7.170 -11.646 13.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.037 4.037 3 N -0.149 5.149 4 C -0.474 4.474 5 H 0.081 0.919 6 C -0.191 4.191 7 N -0.514 5.514 8 Si 0.801 3.199 9 H -0.193 1.193 10 H -0.196 1.196 11 H -0.206 1.206 12 C 0.191 3.809 13 O -0.529 6.529 14 C 0.092 3.908 15 O -0.277 6.277 16 C -0.070 4.070 17 C -0.154 4.154 18 C -0.138 4.138 19 C -0.158 4.158 20 C -0.146 4.146 21 C -0.159 4.159 22 C -0.149 4.149 23 H 0.052 0.948 24 H 0.084 0.916 25 H 0.059 0.941 26 H 0.123 0.877 27 H 0.108 0.892 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.032 0.968 31 H 0.130 0.870 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.066 0.934 37 H 0.098 0.902 38 H 0.080 0.920 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.099 0.901 42 H 0.086 0.914 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.364 -6.970 -11.493 13.648 hybrid contribution -0.347 1.350 1.399 1.974 sum 2.018 -5.621 -10.094 11.728 Atomic orbital electron populations 1.21871 0.97077 1.00554 1.00071 1.22416 0.94317 0.82454 1.04523 1.43997 1.40475 1.11802 1.18576 1.19524 1.43577 0.90379 0.93885 0.91855 1.25815 0.97502 0.97637 0.98163 1.69955 1.43625 1.13232 1.24571 0.85188 0.78886 0.78182 0.77659 1.19288 1.19567 1.20552 1.21690 0.82500 0.89509 0.87209 1.90454 1.58258 1.23225 1.81011 1.20237 0.96774 0.82697 0.91058 1.87848 1.52466 1.27771 1.59619 1.22807 0.89376 1.03519 0.91309 1.20687 0.95449 1.01187 0.98080 1.21210 1.01343 0.97720 0.93480 1.21402 0.95249 1.00073 0.99049 1.21866 0.95191 1.02410 0.95174 1.21354 0.99325 0.98982 0.96214 1.21492 0.96094 0.99005 0.98343 0.94845 0.91583 0.94064 0.87734 0.89210 0.91804 0.93102 0.96814 0.86987 0.91545 0.91723 0.90281 0.90276 0.93373 0.90232 0.92024 0.90610 0.91622 0.90138 0.91404 0.93738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.87 9.25 71.98 0.67 -5.20 16 2 C 0.08 3.86 3.71 86.38 0.32 4.18 16 3 N -0.43 -22.72 2.41 -635.51 -1.53 -24.25 16 4 C -0.35 -20.01 8.95 84.04 0.75 -19.26 16 5 H 0.06 4.01 7.37 -2.91 -0.02 3.98 16 6 C 0.01 0.61 3.91 84.93 0.33 0.94 16 7 N -0.88 -45.48 9.44 21.66 0.20 -45.27 16 8 Si 0.98 43.00 29.58 68.60 2.03 45.03 16 9 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 10 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 12 C 0.40 20.44 5.03 87.66 0.44 20.89 16 13 O -0.64 -37.85 15.49 -3.08 -0.05 -37.90 16 14 C 0.13 5.13 0.28 -13.40 0.00 5.12 16 15 O -0.36 -12.59 4.81 -148.98 -0.72 -13.31 16 16 C 0.03 0.91 9.36 113.37 1.06 1.97 16 17 C -0.12 -3.89 3.92 28.74 0.11 -3.78 16 18 C -0.10 -2.44 5.57 30.22 0.17 -2.27 16 19 C -0.12 -2.57 5.32 30.16 0.16 -2.41 16 20 C -0.11 -2.22 5.85 31.31 0.18 -2.04 16 21 C -0.12 -3.10 4.60 30.14 0.14 -2.96 16 22 C -0.11 -3.82 3.52 30.20 0.11 -3.71 16 23 H 0.03 1.35 7.36 -2.39 -0.02 1.33 16 24 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 25 H 0.04 1.95 5.82 -2.39 -0.01 1.94 16 26 H 0.11 4.30 3.46 -5.22 -0.02 4.28 16 27 H 0.09 4.52 5.80 -2.38 -0.01 4.51 16 28 H 0.27 13.24 8.31 -92.71 -0.77 12.47 16 29 H 0.05 1.64 6.21 -2.39 -0.01 1.63 16 30 H 0.01 0.59 6.57 -2.39 -0.02 0.57 16 31 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 32 H 0.07 2.37 5.06 -2.38 -0.01 2.36 16 33 H 0.06 2.25 7.46 -2.39 -0.02 2.24 16 34 H 0.08 1.94 6.23 -2.38 -0.01 1.93 16 35 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.05 1.15 6.63 -2.39 -0.02 1.13 16 37 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 39 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 41 H 0.08 2.10 5.08 -2.39 -0.01 2.08 16 42 H 0.07 2.36 6.98 -2.38 -0.02 2.34 16 43 H 0.04 1.74 6.98 -2.39 -0.02 1.73 16 Total: -1.00 -65.96 304.61 5.37 -60.59 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: 0.99 Total: 23.64 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: 4.44 Total: -8.53 kcal Atomic # 7 Polarization: -68.20 SS G_CDS: -1.32 Total: -69.52 kcal Atomic # 8 Polarization: -50.44 SS G_CDS: -0.76 Total: -51.21 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -65.96 5.37 -60.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930619890.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.252 kcal (2) G-P(sol) polarization free energy of solvation -65.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds