Wall clock time and date at job start Mon Mar 30 2020 00:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99746 * 2 1 4 4 C 1.50702 * 108.87197 * 303.47414 * 3 2 1 5 5 O 1.21288 * 119.99701 * 144.93579 * 4 3 2 6 6 N 1.34771 * 120.00371 * 324.94000 * 4 3 2 7 7 C 1.46503 * 119.99999 * 174.98860 * 6 4 3 8 8 H 1.08997 * 109.47318 * 34.99889 * 7 6 4 9 9 C 1.52995 * 109.47168 * 274.99473 * 7 6 4 10 10 C 1.50702 * 109.46950 * 154.99640 * 7 6 4 11 11 H 1.08002 * 120.00045 * 0.02562 * 10 7 6 12 12 C 1.37873 * 119.99862 * 180.02562 * 10 7 6 13 13 N 1.31512 * 120.00146 * 359.97438 * 12 10 7 14 14 Si 1.86806 * 119.99979 * 180.02562 * 12 10 7 15 15 H 1.48497 * 109.46950 * 60.00155 * 14 12 10 16 16 H 1.48504 * 109.47178 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47053 * 300.00126 * 14 12 10 18 18 C 1.54233 * 108.82045 * 62.03770 * 3 2 1 19 19 C 1.50475 * 108.52473 * 40.71828 * 18 3 2 20 20 C 1.54066 * 112.50132 * 94.15024 * 19 18 3 21 21 C 1.54068 * 112.81555 * 318.28704 * 20 19 18 22 22 C 1.50474 * 112.49185 * 318.27919 * 21 20 19 23 23 C 1.45546 * 108.89414 * 184.87250 * 3 2 1 24 24 H 1.08998 * 109.47368 * 295.11507 * 1 2 3 25 25 H 1.09002 * 109.47008 * 55.11700 * 1 2 3 26 26 H 1.09000 * 109.47058 * 175.10672 * 1 2 3 27 27 H 0.96999 * 120.00243 * 354.98272 * 6 4 3 28 28 H 1.08997 * 109.47341 * 300.00402 * 9 7 6 29 29 H 1.08995 * 109.47020 * 179.97438 * 9 7 6 30 30 H 1.09010 * 109.46710 * 60.00012 * 9 7 6 31 31 H 0.97005 * 120.00354 * 180.02562 * 13 12 10 32 32 H 1.08998 * 109.62882 * 160.42730 * 18 3 2 33 33 H 1.08996 * 109.63029 * 281.00536 * 18 3 2 34 34 H 1.08994 * 108.87645 * 333.36964 * 19 18 3 35 35 H 1.09006 * 108.87458 * 214.92541 * 19 18 3 36 36 H 1.09000 * 108.81737 * 197.42119 * 20 19 18 37 37 H 1.08998 * 108.72975 * 79.08308 * 20 19 18 38 38 H 1.09008 * 108.87561 * 197.50864 * 21 20 19 39 39 H 1.08996 * 108.88316 * 79.06276 * 21 20 19 40 40 H 1.08996 * 109.63416 * 334.44928 * 22 21 20 41 41 H 1.08998 * 109.62976 * 213.86405 * 22 21 20 42 42 H 1.09004 * 108.89370 * 62.03138 * 23 3 2 43 43 H 1.08997 * 108.89524 * 180.61951 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4899 2.0707 -1.1895 5 8 1.2917 3.2642 -1.1033 6 7 1.2448 1.4289 -2.3489 7 6 0.6364 2.1491 -3.4704 8 1 0.9963 3.1778 -3.4797 9 6 -0.8857 2.1427 -3.3150 10 6 1.0121 1.4737 -4.7641 11 1 1.6408 0.5956 -4.7522 12 6 0.5532 1.9767 -5.9630 13 7 -0.2127 3.0457 -5.9775 14 14 1.0184 1.1392 -7.5666 15 1 0.5268 -0.2620 -7.5539 16 1 0.4018 1.8692 -8.7034 17 1 2.4956 1.1442 -7.7174 18 6 1.5872 2.0384 1.2894 19 6 1.6414 1.0627 2.4337 20 6 2.9843 1.1117 3.1873 21 6 4.1956 1.2288 2.2424 22 6 4.0670 0.3474 1.0297 23 6 3.4553 1.1781 -0.1170 24 1 -0.3634 0.4362 0.9305 25 1 -0.3633 0.5877 -0.8430 26 1 -0.3633 -1.0239 -0.0877 27 1 1.4712 0.4902 -2.4410 28 1 -1.2456 1.1139 -3.3057 29 1 -1.3382 2.6788 -4.1491 30 1 -1.1574 2.6312 -2.3791 31 1 -0.5359 3.3994 -6.8209 32 1 2.2703 2.8659 1.4812 33 1 0.5711 2.4170 1.1789 34 1 1.4914 0.0553 2.0455 35 1 0.8366 1.2930 3.1319 36 1 3.0878 0.2033 3.7807 37 1 2.9778 1.9705 3.8585 38 1 5.0968 0.9487 2.7880 39 1 4.2904 2.2648 1.9171 40 1 3.4163 -0.4968 1.2578 41 1 5.0517 -0.0150 0.7344 42 1 3.6916 0.6971 -1.0662 43 1 3.8995 2.1734 -0.1059 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931156274.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:08 Heat of formation + Delta-G solvation = -99.336620 kcal Electronic energy + Delta-G solvation = -22520.289420 eV Core-core repulsion = 19371.966702 eV Total energy + Delta-G solvation = -3148.322717 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.77676 -37.83627 -36.14948 -34.81436 -32.61553 -32.15385 -31.27481 -28.86761 -26.65333 -25.34370 -24.94459 -24.62296 -21.81318 -20.17985 -19.36765 -19.15707 -17.72749 -16.49643 -15.98871 -15.62196 -15.22033 -15.11637 -14.53152 -14.14064 -13.85497 -13.46722 -13.30164 -13.03037 -12.83802 -12.52662 -12.29498 -12.04256 -11.78774 -11.70608 -11.14910 -11.08283 -10.95795 -10.94111 -10.79366 -10.67686 -10.54875 -10.34494 -10.30269 -10.23816 -10.18261 -9.84001 -9.06506 -8.70157 -8.54827 -7.87841 -6.12333 -4.21565 3.24599 3.26359 3.31053 3.32814 3.78251 4.13057 4.36951 4.69047 4.76561 4.91295 5.11202 5.19641 5.25651 5.32951 5.36073 5.37082 5.55012 5.55291 5.66388 5.78116 5.83292 5.92815 5.99016 6.04262 6.16187 6.16989 6.21358 6.25275 6.33068 6.45889 6.55066 6.77705 6.90684 7.11488 7.16560 7.43951 7.56959 7.69400 7.89960 8.13499 8.66088 8.77078 9.09691 9.45907 10.93576 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.032415 B = 0.004949 C = 0.004756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.598430 B = 5656.898873 C = 5885.616933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.368 6.368 3 C 0.113 3.887 4 C 0.479 3.521 5 O -0.551 6.551 6 N -0.700 5.700 7 C 0.262 3.738 8 H 0.049 0.951 9 C -0.146 4.146 10 C -0.533 4.533 11 H 0.061 0.939 12 C 0.067 3.933 13 N -0.884 5.884 14 Si 0.902 3.098 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.276 1.276 18 C -0.121 4.121 19 C -0.127 4.127 20 C -0.113 4.113 21 C -0.121 4.121 22 C -0.109 4.109 23 C -0.111 4.111 24 H 0.042 0.958 25 H 0.057 0.943 26 H 0.085 0.915 27 H 0.393 0.607 28 H 0.027 0.973 29 H 0.091 0.909 30 H 0.011 0.989 31 H 0.265 0.735 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.078 0.922 41 H 0.063 0.937 42 H 0.073 0.927 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.650 -6.496 15.085 17.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.287 6.287 3 C 0.070 3.930 4 C 0.262 3.738 5 O -0.430 6.430 6 N -0.348 5.348 7 C 0.160 3.840 8 H 0.066 0.934 9 C -0.204 4.204 10 C -0.571 4.571 11 H 0.079 0.921 12 C -0.137 4.137 13 N -0.522 5.522 14 Si 0.729 3.271 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.202 1.202 18 C -0.159 4.159 19 C -0.165 4.165 20 C -0.150 4.150 21 C -0.159 4.159 22 C -0.147 4.147 23 C -0.148 4.148 24 H 0.061 0.939 25 H 0.076 0.924 26 H 0.104 0.896 27 H 0.227 0.773 28 H 0.046 0.954 29 H 0.109 0.891 30 H 0.030 0.970 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.092 0.908 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.482 -5.675 14.972 16.627 hybrid contribution 0.027 -0.572 -1.028 1.176 sum 4.508 -6.247 13.944 15.931 Atomic orbital electron populations 1.22951 0.81151 1.02942 1.01203 1.87957 1.19921 1.26386 1.94443 1.20559 0.95068 0.83596 0.93773 1.21119 0.79014 0.88355 0.85299 1.90656 1.53309 1.14947 1.84090 1.46592 1.60543 1.14368 1.13280 1.18763 0.89572 0.93674 0.81988 0.93363 1.22084 0.99104 0.99230 1.00006 1.21172 1.32095 1.13421 0.90420 0.92125 1.24882 0.94706 0.94882 0.99187 1.69889 1.33660 1.21852 1.26798 0.86503 0.78776 0.79429 0.82364 1.20149 1.21140 1.20166 1.21629 1.02763 0.98472 0.93053 1.21386 0.96786 1.01553 0.96733 1.21876 0.94294 1.01161 0.97689 1.21390 0.97497 1.00414 0.96567 1.21203 1.00612 0.98814 0.94047 1.20479 0.92059 1.01783 1.00497 0.93899 0.92432 0.89604 0.77346 0.95411 0.89053 0.96962 0.92534 0.90302 0.91214 0.89942 0.92586 0.92533 0.92732 0.92536 0.92087 0.90351 0.91860 0.90784 0.90152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.73 101.05 0.98 1.18 16 2 O -0.37 -5.33 7.13 -35.23 -0.25 -5.58 16 3 C 0.11 1.74 0.54 -94.64 -0.05 1.69 16 4 C 0.48 9.70 5.16 -10.99 -0.06 9.64 16 5 O -0.55 -13.26 15.78 5.55 0.09 -13.17 16 6 N -0.70 -14.89 3.91 -54.93 -0.21 -15.11 16 7 C 0.26 6.71 2.60 -69.08 -0.18 6.53 16 8 H 0.05 1.43 7.51 -51.93 -0.39 1.04 16 9 C -0.15 -3.61 9.26 37.16 0.34 -3.26 16 10 C -0.53 -14.22 8.73 -34.44 -0.30 -14.52 16 11 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 12 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 13 N -0.88 -24.97 11.32 55.43 0.63 -24.34 16 14 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 15 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 16 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 18 C -0.12 -1.72 3.51 -27.35 -0.10 -1.81 16 19 C -0.13 -1.45 4.48 -27.44 -0.12 -1.57 16 20 C -0.11 -1.12 5.85 -25.62 -0.15 -1.27 16 21 C -0.12 -1.24 5.31 -27.44 -0.15 -1.38 16 22 C -0.11 -1.22 5.57 -27.34 -0.15 -1.37 16 23 C -0.11 -1.54 4.11 -29.60 -0.12 -1.66 16 24 H 0.04 0.54 6.40 -51.93 -0.33 0.20 16 25 H 0.06 0.94 6.19 -51.93 -0.32 0.62 16 26 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.39 7.67 8.03 -40.82 -0.33 7.34 16 28 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 30 H 0.01 0.28 8.14 -51.92 -0.42 -0.15 16 31 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.08 1.13 6.98 -51.93 -0.36 0.77 16 33 H 0.07 1.08 7.40 -51.93 -0.38 0.70 16 34 H 0.08 0.98 5.00 -51.93 -0.26 0.72 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 39 H 0.06 0.66 6.63 -51.93 -0.34 0.32 16 40 H 0.08 0.91 6.24 -51.93 -0.32 0.59 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 43 H 0.08 1.15 7.46 -51.93 -0.39 0.76 16 LS Contribution 322.36 15.07 4.86 4.86 Total: -1.00 -29.43 322.36 -7.15 -36.58 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -7.09 Total: 7.15 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: -0.14 Total: -6.11 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.41 Total: -39.45 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.16 Total: -18.76 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.43 -7.15 -36.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931156274.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.752 kcal (2) G-P(sol) polarization free energy of solvation -29.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds