Wall clock time and date at job start Mon Mar 30 2020 00:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99746 * 2 1 4 4 C 1.50702 * 108.87197 * 303.47414 * 3 2 1 5 5 O 1.21288 * 119.99701 * 144.93579 * 4 3 2 6 6 N 1.34771 * 120.00371 * 324.94000 * 4 3 2 7 7 C 1.46503 * 119.99999 * 174.98860 * 6 4 3 8 8 H 1.08997 * 109.47318 * 34.99889 * 7 6 4 9 9 C 1.52995 * 109.47168 * 274.99473 * 7 6 4 10 10 C 1.50702 * 109.46950 * 154.99640 * 7 6 4 11 11 H 1.08002 * 120.00045 * 0.02562 * 10 7 6 12 12 C 1.37873 * 119.99862 * 180.02562 * 10 7 6 13 13 N 1.31512 * 120.00146 * 359.97438 * 12 10 7 14 14 Si 1.86806 * 119.99979 * 180.02562 * 12 10 7 15 15 H 1.48497 * 109.46950 * 60.00155 * 14 12 10 16 16 H 1.48504 * 109.47178 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47053 * 300.00126 * 14 12 10 18 18 C 1.54233 * 108.82045 * 62.03770 * 3 2 1 19 19 C 1.50475 * 108.52473 * 40.71828 * 18 3 2 20 20 C 1.54066 * 112.50132 * 94.15024 * 19 18 3 21 21 C 1.54068 * 112.81555 * 318.28704 * 20 19 18 22 22 C 1.50474 * 112.49185 * 318.27919 * 21 20 19 23 23 C 1.45546 * 108.89414 * 184.87250 * 3 2 1 24 24 H 1.08998 * 109.47368 * 295.11507 * 1 2 3 25 25 H 1.09002 * 109.47008 * 55.11700 * 1 2 3 26 26 H 1.09000 * 109.47058 * 175.10672 * 1 2 3 27 27 H 0.96999 * 120.00243 * 354.98272 * 6 4 3 28 28 H 1.08997 * 109.47341 * 300.00402 * 9 7 6 29 29 H 1.08995 * 109.47020 * 179.97438 * 9 7 6 30 30 H 1.09010 * 109.46710 * 60.00012 * 9 7 6 31 31 H 0.97005 * 120.00354 * 180.02562 * 13 12 10 32 32 H 1.08998 * 109.62882 * 160.42730 * 18 3 2 33 33 H 1.08996 * 109.63029 * 281.00536 * 18 3 2 34 34 H 1.08994 * 108.87645 * 333.36964 * 19 18 3 35 35 H 1.09006 * 108.87458 * 214.92541 * 19 18 3 36 36 H 1.09000 * 108.81737 * 197.42119 * 20 19 18 37 37 H 1.08998 * 108.72975 * 79.08308 * 20 19 18 38 38 H 1.09008 * 108.87561 * 197.50864 * 21 20 19 39 39 H 1.08996 * 108.88316 * 79.06276 * 21 20 19 40 40 H 1.08996 * 109.63416 * 334.44928 * 22 21 20 41 41 H 1.08998 * 109.62976 * 213.86405 * 22 21 20 42 42 H 1.09004 * 108.89370 * 62.03138 * 23 3 2 43 43 H 1.08997 * 108.89524 * 180.61951 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4899 2.0707 -1.1895 5 8 1.2917 3.2642 -1.1033 6 7 1.2448 1.4289 -2.3489 7 6 0.6364 2.1491 -3.4704 8 1 0.9963 3.1778 -3.4797 9 6 -0.8857 2.1427 -3.3150 10 6 1.0121 1.4737 -4.7641 11 1 1.6408 0.5956 -4.7522 12 6 0.5532 1.9767 -5.9630 13 7 -0.2127 3.0457 -5.9775 14 14 1.0184 1.1392 -7.5666 15 1 0.5268 -0.2620 -7.5539 16 1 0.4018 1.8692 -8.7034 17 1 2.4956 1.1442 -7.7174 18 6 1.5872 2.0384 1.2894 19 6 1.6414 1.0627 2.4337 20 6 2.9843 1.1117 3.1873 21 6 4.1956 1.2288 2.2424 22 6 4.0670 0.3474 1.0297 23 6 3.4553 1.1781 -0.1170 24 1 -0.3634 0.4362 0.9305 25 1 -0.3633 0.5877 -0.8430 26 1 -0.3633 -1.0239 -0.0877 27 1 1.4712 0.4902 -2.4410 28 1 -1.2456 1.1139 -3.3057 29 1 -1.3382 2.6788 -4.1491 30 1 -1.1574 2.6312 -2.3791 31 1 -0.5359 3.3994 -6.8209 32 1 2.2703 2.8659 1.4812 33 1 0.5711 2.4170 1.1789 34 1 1.4914 0.0553 2.0455 35 1 0.8366 1.2930 3.1319 36 1 3.0878 0.2033 3.7807 37 1 2.9778 1.9705 3.8585 38 1 5.0968 0.9487 2.7880 39 1 4.2904 2.2648 1.9171 40 1 3.4163 -0.4968 1.2578 41 1 5.0517 -0.0150 0.7344 42 1 3.6916 0.6971 -1.0662 43 1 3.8995 2.1734 -0.1059 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931156274.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:08 Heat of formation + Delta-G solvation = -117.529655 kcal Electronic energy + Delta-G solvation = -22521.078329 eV Core-core repulsion = 19371.966702 eV Total energy + Delta-G solvation = -3149.111626 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.12466 -39.37455 -37.26323 -36.71035 -34.33950 -33.45611 -32.38191 -30.78454 -27.76163 -27.38595 -26.20308 -25.63011 -23.40842 -21.73257 -20.92469 -20.09290 -19.36325 -17.86239 -17.70130 -17.14386 -16.65018 -16.29852 -16.25160 -15.42119 -15.19242 -14.88379 -14.48049 -14.46649 -14.22675 -13.92035 -13.73812 -13.53918 -13.04556 -13.02410 -12.97187 -12.77614 -12.74563 -12.32147 -12.24960 -12.17000 -12.01220 -11.77739 -11.41953 -11.23078 -11.15627 -11.08555 -11.04648 -10.63205 -10.27635 -9.75200 -8.19688 -6.37715 1.43462 1.45594 1.53487 1.62426 2.26330 2.45975 2.80955 3.10338 3.52505 3.76137 3.79880 4.12147 4.20558 4.25963 4.36623 4.38352 4.48420 4.50494 4.54286 4.69145 4.75853 4.84243 4.89262 4.91014 4.94786 5.04724 5.08071 5.14739 5.26318 5.33459 5.34721 5.38091 5.42006 5.51849 5.56647 5.62289 5.65962 5.81188 6.01737 6.06186 6.68761 6.88323 7.27855 7.44956 8.86249 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.032415 B = 0.004949 C = 0.004756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.598430 B = 5656.898873 C = 5885.616933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.362 6.362 3 C 0.128 3.872 4 C 0.474 3.526 5 O -0.594 6.594 6 N -0.695 5.695 7 C 0.268 3.732 8 H -0.003 1.003 9 C -0.129 4.129 10 C -0.548 4.548 11 H 0.070 0.930 12 C 0.016 3.984 13 N -0.917 5.917 14 Si 0.973 3.027 15 H -0.264 1.264 16 H -0.285 1.285 17 H -0.271 1.271 18 C -0.117 4.117 19 C -0.122 4.122 20 C -0.111 4.111 21 C -0.123 4.123 22 C -0.099 4.099 23 C -0.115 4.115 24 H 0.055 0.945 25 H 0.027 0.973 26 H 0.113 0.887 27 H 0.404 0.596 28 H 0.042 0.958 29 H 0.067 0.933 30 H 0.010 0.990 31 H 0.266 0.734 32 H 0.074 0.926 33 H 0.050 0.950 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.076 0.924 39 H 0.050 0.950 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.643 -8.870 16.208 19.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.280 6.280 3 C 0.086 3.914 4 C 0.260 3.740 5 O -0.476 6.476 6 N -0.344 5.344 7 C 0.165 3.835 8 H 0.015 0.985 9 C -0.188 4.188 10 C -0.586 4.586 11 H 0.088 0.912 12 C -0.184 4.184 13 N -0.555 5.555 14 Si 0.797 3.203 15 H -0.188 1.188 16 H -0.210 1.210 17 H -0.197 1.197 18 C -0.155 4.155 19 C -0.159 4.159 20 C -0.148 4.148 21 C -0.160 4.160 22 C -0.136 4.136 23 C -0.152 4.152 24 H 0.074 0.926 25 H 0.045 0.955 26 H 0.132 0.868 27 H 0.239 0.761 28 H 0.061 0.939 29 H 0.086 0.914 30 H 0.029 0.971 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.069 0.931 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.486 -8.086 16.120 18.850 hybrid contribution -0.308 0.220 -1.359 1.411 sum 5.178 -7.866 14.761 17.509 Atomic orbital electron populations 1.23061 0.80551 1.04261 1.00571 1.87974 1.20468 1.25314 1.94268 1.20457 0.95816 0.83516 0.91657 1.22126 0.77638 0.88127 0.86071 1.90627 1.54939 1.17173 1.84858 1.46364 1.60565 1.14609 1.12823 1.18382 0.90040 0.91478 0.83611 0.98542 1.21871 0.98516 0.99619 0.98817 1.21470 1.32391 1.13778 0.90971 0.91200 1.25790 0.94435 0.95372 1.02793 1.70039 1.34553 1.23212 1.27695 0.85389 0.78501 0.78708 0.77698 1.18824 1.21006 1.19656 1.21611 1.01374 0.99044 0.93494 1.21357 0.98463 1.00286 0.95819 1.21879 0.92997 1.02402 0.97570 1.21406 0.98626 0.99597 0.96389 1.21168 1.01098 0.98297 0.93084 1.20546 0.90943 1.02018 1.01726 0.92607 0.95451 0.86844 0.76086 0.93933 0.91380 0.97123 0.92479 0.90778 0.93139 0.89940 0.91405 0.90781 0.92058 0.90491 0.93124 0.90204 0.90274 0.91551 0.90968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.31 9.73 113.37 1.10 1.41 16 2 O -0.36 -9.90 7.13 -148.98 -1.06 -10.97 16 3 C 0.13 3.92 0.54 -13.40 -0.01 3.91 16 4 C 0.47 19.80 5.16 87.66 0.45 20.25 16 5 O -0.59 -30.03 15.78 -3.05 -0.05 -30.08 16 6 N -0.70 -30.30 3.91 -446.10 -1.74 -32.04 16 7 C 0.27 14.26 2.60 44.24 0.12 14.37 16 8 H 0.00 -0.21 7.51 -2.39 -0.02 -0.23 16 9 C -0.13 -6.62 9.26 71.98 0.67 -5.95 16 10 C -0.55 -29.58 8.73 25.60 0.22 -29.36 16 11 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 12 C 0.02 0.88 5.30 84.65 0.45 1.33 16 13 N -0.92 -52.98 11.32 21.45 0.24 -52.74 16 14 Si 0.97 42.35 29.54 68.60 2.03 44.38 16 15 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 16 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 17 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 18 C -0.12 -3.25 3.51 30.20 0.11 -3.14 16 19 C -0.12 -2.49 4.48 30.14 0.13 -2.36 16 20 C -0.11 -1.86 5.85 31.32 0.18 -1.68 16 21 C -0.12 -2.16 5.31 30.14 0.16 -2.00 16 22 C -0.10 -1.96 5.57 30.20 0.17 -1.79 16 23 C -0.11 -3.10 4.11 28.74 0.12 -2.98 16 24 H 0.06 1.31 6.40 -2.39 -0.02 1.29 16 25 H 0.03 0.88 6.19 -2.39 -0.01 0.87 16 26 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.40 15.77 8.03 -92.71 -0.74 15.02 16 28 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.07 3.81 6.07 -2.39 -0.01 3.79 16 30 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 31 H 0.27 14.55 8.31 -92.70 -0.77 13.78 16 32 H 0.07 2.12 6.98 -2.39 -0.02 2.10 16 33 H 0.05 1.58 7.40 -2.39 -0.02 1.57 16 34 H 0.08 1.71 5.00 -2.39 -0.01 1.70 16 35 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.06 0.96 8.14 -2.39 -0.02 0.95 16 38 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 39 H 0.05 1.01 6.63 -2.39 -0.02 0.99 16 40 H 0.08 1.59 6.24 -2.39 -0.01 1.58 16 41 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.07 1.88 8.10 -2.39 -0.02 1.86 16 43 H 0.07 2.06 7.46 -2.39 -0.02 2.04 16 Total: -1.00 -65.34 322.36 3.54 -61.80 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: 0.25 Total: 27.64 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: 3.87 Total: -8.00 kcal Atomic # 7 Polarization: -83.28 SS G_CDS: -1.50 Total: -84.78 kcal Atomic # 8 Polarization: -39.93 SS G_CDS: -1.11 Total: -41.04 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -65.34 3.54 -61.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931156274.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.726 kcal (2) G-P(sol) polarization free energy of solvation -65.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds