Wall clock time and date at job start Mon Mar 30 2020 00:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42908 * 114.00245 * 2 1 4 4 C 1.50704 * 108.86785 * 303.63508 * 3 2 1 5 5 O 1.21283 * 119.99617 * 144.67527 * 4 3 2 6 6 N 1.34770 * 120.00403 * 324.67461 * 4 3 2 7 7 C 1.46496 * 120.00175 * 185.14671 * 6 4 3 8 8 H 1.09004 * 109.47356 * 324.99715 * 7 6 4 9 9 C 1.53003 * 109.47271 * 85.00278 * 7 6 4 10 10 C 1.50704 * 109.47380 * 205.00102 * 7 6 4 11 11 H 1.07999 * 120.00167 * 274.23131 * 10 7 6 12 12 C 1.37880 * 120.00049 * 94.22992 * 10 7 6 13 13 N 1.31517 * 119.99468 * 354.13559 * 12 10 7 14 14 Si 1.86799 * 120.00183 * 174.14224 * 12 10 7 15 15 H 1.48498 * 109.46722 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47327 * 119.99476 * 14 12 10 17 17 H 1.48500 * 109.46769 * 240.00164 * 14 12 10 18 18 C 1.54238 * 108.81554 * 62.19093 * 3 2 1 19 19 C 1.50475 * 108.52514 * 40.72669 * 18 3 2 20 20 C 1.54065 * 112.50296 * 94.14688 * 19 18 3 21 21 C 1.54069 * 112.81230 * 318.28163 * 20 19 18 22 22 C 1.50464 * 112.49904 * 318.28588 * 21 20 19 23 23 C 1.45541 * 108.89836 * 185.03085 * 3 2 1 24 24 H 1.08999 * 109.47489 * 305.11085 * 1 2 3 25 25 H 1.09008 * 109.47252 * 65.11321 * 1 2 3 26 26 H 1.08998 * 109.47401 * 185.10644 * 1 2 3 27 27 H 0.97006 * 119.99886 * 5.14912 * 6 4 3 28 28 H 1.09004 * 109.46540 * 295.01162 * 9 7 6 29 29 H 1.08998 * 109.47247 * 55.00890 * 9 7 6 30 30 H 1.08995 * 109.46902 * 175.01429 * 9 7 6 31 31 H 0.96996 * 120.00876 * 4.81488 * 13 12 10 32 32 H 1.09006 * 109.62588 * 160.43300 * 18 3 2 33 33 H 1.08997 * 109.63114 * 281.00941 * 18 3 2 34 34 H 1.09000 * 108.87486 * 333.36597 * 19 18 3 35 35 H 1.09003 * 108.87230 * 214.92401 * 19 18 3 36 36 H 1.09001 * 108.81646 * 197.42246 * 20 19 18 37 37 H 1.09000 * 108.72526 * 79.08441 * 20 19 18 38 38 H 1.09000 * 108.87131 * 197.50623 * 21 20 19 39 39 H 1.08996 * 108.87294 * 79.06674 * 21 20 19 40 40 H 1.08999 * 109.62954 * 334.44338 * 22 21 20 41 41 H 1.09006 * 109.63167 * 213.86596 * 22 21 20 42 42 H 1.09001 * 108.89364 * 62.02913 * 23 3 2 43 43 H 1.09000 * 108.89433 * 180.61960 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4869 2.0720 -1.1873 5 8 1.2845 3.2645 -1.0979 6 7 1.2438 1.4325 -2.3484 7 6 0.8433 2.1939 -3.5342 8 1 0.2201 3.0357 -3.2321 9 6 2.0906 2.7141 -4.2516 10 6 0.0641 1.3009 -4.4651 11 1 0.5845 0.6815 -5.1807 12 6 -1.3130 1.2747 -4.4034 13 7 -1.9416 1.9389 -3.4582 14 14 -2.2859 0.2956 -5.6621 15 1 -1.3500 -0.3563 -6.6130 16 1 -3.0897 -0.7424 -4.9680 17 1 -3.1914 1.2076 -6.4061 18 6 1.5904 2.0370 1.2913 19 6 1.6475 1.0600 2.4344 20 6 2.9922 1.1082 3.1846 21 6 4.2011 1.2262 2.2368 22 6 4.0695 0.3463 1.0234 23 6 3.4550 1.1782 -0.1207 24 1 -0.3634 0.5911 0.8406 25 1 -0.3634 0.4325 -0.9323 26 1 -0.3634 -1.0236 0.0915 27 1 1.3340 0.4680 -2.3990 28 1 2.6068 3.4288 -3.6105 29 1 2.7556 1.8800 -4.4750 30 1 1.7978 3.2043 -5.1800 31 1 -1.4420 2.5030 -2.8474 32 1 2.2740 2.8643 1.4823 33 1 0.5740 2.4157 1.1837 34 1 1.4965 0.0530 2.0454 35 1 0.8444 1.2895 3.1348 36 1 3.0972 0.1991 3.7768 37 1 2.9873 1.9662 3.8568 38 1 5.1036 0.9456 2.7799 39 1 4.2950 2.2626 1.9125 40 1 3.4194 -0.4981 1.2523 41 1 5.0535 -0.0159 0.7252 42 1 3.6888 0.6983 -1.0711 43 1 3.8992 2.1735 -0.1096 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931156275.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:10 Heat of formation + Delta-G solvation = -124.843153 kcal Electronic energy + Delta-G solvation = -22791.278100 eV Core-core repulsion = 19641.849336 eV Total energy + Delta-G solvation = -3149.428764 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.13541 -39.41280 -37.30891 -36.83885 -34.21625 -33.46299 -32.41436 -31.18234 -27.83874 -26.84108 -26.18779 -25.66499 -23.50310 -21.95346 -20.89083 -20.12543 -19.53718 -18.37954 -17.71664 -16.87483 -16.59461 -16.24635 -15.76576 -15.56813 -15.53485 -15.10949 -14.85543 -14.41084 -14.32781 -13.95689 -13.85986 -13.53287 -13.12421 -13.07348 -13.00036 -12.85142 -12.64502 -12.28711 -12.11897 -12.05388 -11.89539 -11.81552 -11.46140 -11.27864 -11.14454 -11.08707 -10.85122 -10.77664 -10.21789 -9.70839 -8.73937 -6.53122 1.54441 1.60430 1.63917 1.79242 2.30057 2.51662 2.75077 3.19918 3.51446 3.73993 3.79511 4.09129 4.16727 4.21843 4.29448 4.32763 4.38946 4.41732 4.45792 4.51580 4.67066 4.68577 4.70616 4.84029 4.85923 4.91215 5.03524 5.09822 5.12495 5.23148 5.24938 5.29127 5.30657 5.38944 5.47326 5.61907 5.65560 5.87742 5.97707 6.08285 6.42209 6.90616 7.35098 7.40383 8.62124 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.028929 B = 0.005689 C = 0.005328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.659473 B = 4920.858624 C = 5254.234509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.361 6.361 3 C 0.123 3.877 4 C 0.469 3.531 5 O -0.600 6.600 6 N -0.692 5.692 7 C 0.230 3.770 8 H 0.011 0.989 9 C -0.130 4.130 10 C -0.610 4.610 11 H 0.062 0.938 12 C -0.017 4.017 13 N -0.920 5.920 14 Si 1.124 2.876 15 H -0.265 1.265 16 H -0.279 1.279 17 H -0.283 1.283 18 C -0.116 4.116 19 C -0.123 4.123 20 C -0.110 4.110 21 C -0.121 4.121 22 C -0.100 4.100 23 C -0.109 4.109 24 H 0.049 0.951 25 H 0.021 0.979 26 H 0.113 0.887 27 H 0.397 0.603 28 H 0.028 0.972 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.256 0.744 32 H 0.076 0.924 33 H 0.042 0.958 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.079 0.921 39 H 0.051 0.949 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.066 0.934 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.364 -6.553 10.883 16.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.280 6.280 3 C 0.080 3.920 4 C 0.254 3.746 5 O -0.483 6.483 6 N -0.341 5.341 7 C 0.129 3.871 8 H 0.029 0.971 9 C -0.189 4.189 10 C -0.648 4.648 11 H 0.080 0.920 12 C -0.218 4.218 13 N -0.555 5.555 14 Si 0.946 3.054 15 H -0.190 1.190 16 H -0.205 1.205 17 H -0.209 1.209 18 C -0.155 4.155 19 C -0.160 4.160 20 C -0.147 4.147 21 C -0.159 4.159 22 C -0.137 4.137 23 C -0.147 4.147 24 H 0.067 0.933 25 H 0.040 0.960 26 H 0.131 0.869 27 H 0.233 0.767 28 H 0.047 0.953 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.095 0.905 33 H 0.060 0.940 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.098 0.902 39 H 0.070 0.930 40 H 0.094 0.906 41 H 0.100 0.900 42 H 0.085 0.915 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.841 -6.337 10.490 15.112 hybrid contribution 0.930 0.978 0.156 1.359 sum 9.771 -5.360 10.647 15.413 Atomic orbital electron populations 1.22939 0.80784 1.04078 1.00020 1.87952 1.19960 1.25787 1.94274 1.20551 0.96037 0.83373 0.92002 1.22184 0.77745 0.88310 0.86312 1.90589 1.55033 1.17671 1.85033 1.47315 1.65415 1.11154 1.10192 1.18783 0.92807 0.92241 0.83290 0.97127 1.21901 0.97774 0.99709 0.99477 1.22343 0.93891 1.28351 1.20249 0.92015 1.27475 0.97392 0.97760 0.99219 1.70855 1.40338 1.27655 1.16701 0.82844 0.74542 0.74834 0.73218 1.18966 1.20484 1.20887 1.21587 1.00987 0.99128 0.93780 1.21355 0.98656 1.00172 0.95836 1.21875 0.92826 1.02460 0.97585 1.21395 0.98546 0.99638 0.96301 1.21177 1.01103 0.98265 0.93197 1.20502 0.90495 1.02031 1.01678 0.93251 0.96044 0.86914 0.76730 0.95313 0.92394 0.92481 0.93340 0.90509 0.93953 0.90217 0.91749 0.90747 0.91946 0.90222 0.92999 0.90555 0.89957 0.91539 0.90724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 9.56 113.37 1.08 1.69 16 2 O -0.36 -11.47 7.06 -148.98 -1.05 -12.52 16 3 C 0.12 4.10 0.56 -13.40 -0.01 4.10 16 4 C 0.47 20.65 5.31 87.66 0.47 21.12 16 5 O -0.60 -31.29 15.77 -3.04 -0.05 -31.33 16 6 N -0.69 -31.63 4.01 -446.09 -1.79 -33.42 16 7 C 0.23 11.91 2.45 44.25 0.11 12.02 16 8 H 0.01 0.65 5.83 -2.39 -0.01 0.64 16 9 C -0.13 -5.81 9.47 71.98 0.68 -5.13 16 10 C -0.61 -32.60 8.49 25.60 0.22 -32.38 16 11 H 0.06 3.19 7.82 -2.91 -0.02 3.17 16 12 C -0.02 -0.93 5.45 84.65 0.46 -0.47 16 13 N -0.92 -55.47 13.63 21.45 0.29 -55.17 16 14 Si 1.12 47.89 29.91 68.60 2.05 49.94 16 15 H -0.27 -10.27 7.11 99.48 0.71 -9.57 16 16 H -0.28 -11.52 7.11 99.48 0.71 -10.82 16 17 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 18 C -0.12 -3.62 3.50 30.20 0.11 -3.51 16 19 C -0.12 -2.90 4.57 30.14 0.14 -2.76 16 20 C -0.11 -2.03 5.85 31.32 0.18 -1.85 16 21 C -0.12 -2.24 5.31 30.14 0.16 -2.08 16 22 C -0.10 -2.09 5.57 30.19 0.17 -1.92 16 23 C -0.11 -3.07 4.11 28.73 0.12 -2.95 16 24 H 0.05 1.56 6.14 -2.39 -0.01 1.55 16 25 H 0.02 0.89 6.35 -2.38 -0.02 0.88 16 26 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 27 H 0.40 17.15 7.66 -92.70 -0.71 16.44 16 28 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 29 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.26 16.33 6.58 -92.71 -0.61 15.72 16 32 H 0.08 2.36 6.98 -2.38 -0.02 2.34 16 33 H 0.04 1.53 7.17 -2.39 -0.02 1.51 16 34 H 0.08 1.95 5.06 -2.39 -0.01 1.93 16 35 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.05 1.06 6.63 -2.39 -0.02 1.04 16 40 H 0.08 1.67 6.24 -2.39 -0.01 1.65 16 41 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 42 H 0.07 1.92 8.10 -2.39 -0.02 1.90 16 43 H 0.07 2.14 7.46 -2.39 -0.02 2.12 16 Total: -1.00 -65.94 323.20 3.78 -62.16 By element: Atomic # 1 Polarization: 34.06 SS G_CDS: 0.45 Total: 34.50 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: 3.88 Total: -14.15 kcal Atomic # 7 Polarization: -87.10 SS G_CDS: -1.50 Total: -88.60 kcal Atomic # 8 Polarization: -42.76 SS G_CDS: -1.10 Total: -43.86 kcal Atomic # 14 Polarization: 47.89 SS G_CDS: 2.05 Total: 49.94 kcal Total: -65.94 3.78 -62.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931156275.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.688 kcal (2) G-P(sol) polarization free energy of solvation -65.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds