Wall clock time and date at job start Mon Mar 30 2020 00:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47084 * 2 1 4 4 C 1.53001 * 109.47266 * 120.00309 * 2 1 3 5 5 H 1.09000 * 109.47929 * 59.97632 * 4 2 1 6 6 C 1.53089 * 109.47832 * 179.97438 * 4 2 1 7 7 C 1.53184 * 109.21202 * 177.57317 * 6 4 2 8 8 H 1.08997 * 109.54155 * 62.91670 * 7 6 4 9 9 C 1.50701 * 109.54435 * 183.18616 * 7 6 4 10 10 O 1.21286 * 119.99517 * 359.97438 * 9 7 6 11 11 N 1.34771 * 120.00243 * 179.97438 * 9 7 6 12 12 C 1.46504 * 119.99991 * 179.97438 * 11 9 7 13 13 H 1.09001 * 109.46836 * 35.00254 * 12 11 9 14 14 C 1.52995 * 109.47197 * 274.99970 * 12 11 9 15 15 C 1.50702 * 109.46909 * 154.99875 * 12 11 9 16 16 H 1.08007 * 119.99819 * 5.46014 * 15 12 11 17 17 C 1.37876 * 119.99975 * 185.46207 * 15 12 11 18 18 N 1.31512 * 119.99771 * 9.55583 * 17 15 12 19 19 Si 1.86797 * 119.99881 * 189.56219 * 17 15 12 20 20 H 1.48498 * 109.47217 * 84.99335 * 19 17 15 21 21 H 1.48507 * 109.46967 * 204.99372 * 19 17 15 22 22 H 1.48498 * 109.47008 * 324.98963 * 19 17 15 23 23 C 1.53190 * 109.02873 * 303.11221 * 7 6 4 24 24 C 1.53090 * 109.21469 * 56.88854 * 23 7 6 25 25 O 1.42900 * 109.41363 * 302.42413 * 24 23 7 26 26 H 1.08997 * 109.47362 * 59.99373 * 1 2 3 27 27 H 1.08994 * 109.47388 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46659 * 299.99965 * 1 2 3 29 29 H 1.09005 * 109.46659 * 240.00035 * 2 1 3 30 30 H 1.09004 * 109.46853 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47353 * 300.00057 * 3 2 1 32 32 H 1.08996 * 109.47427 * 60.00436 * 3 2 1 33 33 H 1.08997 * 109.52586 * 297.50679 * 6 4 2 34 34 H 1.08992 * 109.52639 * 57.63566 * 6 4 2 35 35 H 0.97005 * 119.99627 * 359.97438 * 11 9 7 36 36 H 1.08999 * 109.47031 * 303.67924 * 14 12 11 37 37 H 1.08998 * 109.47200 * 63.67620 * 14 12 11 38 38 H 1.08998 * 109.46912 * 183.67993 * 14 12 11 39 39 H 0.97001 * 119.99656 * 179.97438 * 18 17 15 40 40 H 1.08998 * 109.47281 * 296.98239 * 23 7 6 41 41 H 1.08999 * 109.57301 * 176.85927 * 23 7 6 42 42 H 1.08994 * 109.48257 * 182.44003 * 24 23 7 43 43 H 1.08997 * 109.48049 * 62.40381 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6765 -1.7489 1.2495 6 6 3.5710 -0.7220 1.2490 7 6 4.0749 -1.3916 2.5312 8 1 3.7529 -2.4327 2.5496 9 6 5.5799 -1.3266 2.5760 10 8 6.1911 -0.7976 1.6718 11 7 6.2465 -1.8564 3.6206 12 6 7.7096 -1.7937 3.6638 13 1 8.0465 -0.8583 3.2170 14 6 8.2938 -2.9719 2.8819 15 6 8.1732 -1.8619 5.0961 16 1 7.4583 -2.0322 5.8876 17 6 9.5100 -1.7068 5.3961 18 7 10.3517 -1.3146 4.4648 19 14 10.1255 -2.0538 7.1253 20 1 10.4078 -3.5047 7.2683 21 1 11.3691 -1.2807 7.3725 22 1 9.0888 -1.6518 8.1096 23 6 3.4927 -0.6548 3.7416 24 6 1.9648 -0.6568 3.6454 25 8 1.5655 -0.0470 2.4163 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 1.8933 -0.5139 -0.8901 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 3.9349 -1.2740 0.3825 34 1 3.9357 0.3043 1.2065 35 1 5.7576 -2.2792 4.3439 36 1 7.9051 -3.9058 3.2879 37 1 8.0122 -2.8869 1.8324 38 1 9.3803 -2.9624 2.9686 39 1 11.2921 -1.2052 4.6760 40 1 3.8558 0.3729 3.7505 41 1 3.8007 -1.1579 4.6582 42 1 1.5472 -0.0963 4.4818 43 1 1.5999 -1.6834 3.6773 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931158409.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:46 Heat of formation + Delta-G solvation = -116.444807 kcal Electronic energy + Delta-G solvation = -21539.323471 eV Core-core repulsion = 18390.258887 eV Total energy + Delta-G solvation = -3149.064584 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.11716 -38.42223 -35.30437 -34.82863 -33.49838 -32.26748 -30.06360 -29.01312 -27.21093 -25.68102 -25.20125 -23.57219 -21.94903 -20.41946 -19.78850 -19.24374 -17.25623 -16.32579 -15.84189 -15.59759 -15.20940 -14.95232 -14.68529 -14.30993 -13.97269 -13.68365 -13.53792 -13.16334 -12.62321 -12.45565 -12.32729 -12.05890 -11.85055 -11.74380 -11.57415 -11.14083 -11.04779 -11.01954 -10.90358 -10.78754 -10.65657 -10.48044 -10.36473 -10.27572 -10.23161 -9.60394 -9.12732 -8.83011 -8.51084 -7.91637 -6.15332 -4.20942 3.23997 3.30609 3.31901 3.39611 3.74673 4.05935 4.36290 4.63204 4.79143 4.90415 4.96733 5.00017 5.04088 5.18389 5.21549 5.34434 5.42012 5.56421 5.61155 5.64465 5.69616 5.76444 5.86419 5.87061 5.95611 5.97457 6.11887 6.20959 6.25515 6.36282 6.50421 6.74598 6.88181 7.07504 7.23593 7.43274 7.55275 7.66758 7.84591 8.06298 8.68294 8.79219 9.14613 9.45386 10.93179 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.036616 B = 0.003935 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.518540 B = 7114.699396 C = 7489.351010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 C -0.147 4.147 4 C 0.095 3.905 5 H 0.055 0.945 6 C -0.129 4.129 7 C -0.111 4.111 8 H 0.088 0.912 9 C 0.506 3.494 10 O -0.554 6.554 11 N -0.708 5.708 12 C 0.262 3.738 13 H 0.055 0.945 14 C -0.141 4.141 15 C -0.537 4.537 16 H 0.061 0.939 17 C 0.068 3.932 18 N -0.881 5.881 19 Si 0.898 3.102 20 H -0.278 1.278 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.146 4.146 24 C 0.065 3.935 25 O -0.375 6.375 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.387 0.613 36 H 0.028 0.972 37 H 0.019 0.981 38 H 0.072 0.928 39 H 0.265 0.735 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.094 0.906 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.215 -0.118 -4.355 18.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.105 4.105 3 C -0.205 4.205 4 C 0.038 3.962 5 H 0.073 0.927 6 C -0.167 4.167 7 C -0.132 4.132 8 H 0.107 0.893 9 C 0.291 3.709 10 O -0.433 6.433 11 N -0.356 5.356 12 C 0.160 3.840 13 H 0.073 0.927 14 C -0.200 4.200 15 C -0.575 4.575 16 H 0.079 0.921 17 C -0.135 4.135 18 N -0.518 5.518 19 Si 0.725 3.275 20 H -0.204 1.204 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.184 4.184 24 C -0.011 4.011 25 O -0.294 6.294 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.098 0.902 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.219 0.781 36 H 0.047 0.953 37 H 0.038 0.962 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.112 0.888 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -17.642 0.476 -5.036 18.353 hybrid contribution 0.514 -0.795 1.395 1.686 sum -17.128 -0.319 -3.642 17.514 Atomic orbital electron populations 1.21771 0.94863 1.01437 1.01968 1.21134 0.96188 0.97279 0.95906 1.21837 1.01533 0.95365 1.01729 1.22159 0.93034 0.95174 0.85865 0.92718 1.22068 0.94591 1.03099 0.96965 1.21390 0.93979 1.00979 0.96890 0.89343 1.20317 0.88813 0.78924 0.82895 1.90649 1.69835 1.45230 1.37562 1.46510 1.10227 1.57372 1.21458 1.18740 0.73222 0.96010 0.96033 0.92747 1.22009 1.02847 0.98339 0.96768 1.21167 0.93220 1.51497 0.91609 0.92131 1.24894 0.96740 0.94393 0.97520 1.69986 1.03909 1.44374 1.33483 0.86525 0.78351 0.78438 0.84163 1.20427 1.21152 1.19900 1.22178 0.96337 1.02288 0.97644 1.22535 0.93652 0.97954 0.87007 1.87890 1.74506 1.53750 1.13290 0.92968 0.93133 0.91835 0.90207 0.92086 0.93166 0.91851 0.90541 0.89730 0.78078 0.95319 0.96225 0.90902 0.92547 0.90404 0.90237 0.88772 0.93317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.05 37.16 0.34 -0.95 16 2 C -0.09 -0.89 2.81 -90.62 -0.25 -1.14 16 3 C -0.15 -1.60 8.70 37.16 0.32 -1.27 16 4 C 0.10 1.09 2.38 -26.68 -0.06 1.03 16 5 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 6 C -0.13 -1.79 3.73 -26.59 -0.10 -1.89 16 7 C -0.11 -1.60 2.62 -91.58 -0.24 -1.84 16 8 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 9 C 0.51 10.07 7.12 -10.99 -0.08 9.99 16 10 O -0.55 -13.34 15.63 5.55 0.09 -13.25 16 11 N -0.71 -14.69 4.98 -54.93 -0.27 -14.96 16 12 C 0.26 6.69 2.42 -69.08 -0.17 6.52 16 13 H 0.05 1.63 7.52 -51.93 -0.39 1.24 16 14 C -0.14 -3.47 9.36 37.15 0.35 -3.12 16 15 C -0.54 -14.24 8.66 -34.44 -0.30 -14.54 16 16 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 17 C 0.07 1.85 5.17 -17.82 -0.09 1.76 16 18 N -0.88 -25.16 12.16 55.43 0.67 -24.49 16 19 Si 0.90 20.62 29.55 -169.99 -5.02 15.60 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 23 C -0.15 -1.85 5.30 -26.59 -0.14 -1.99 16 24 C 0.07 0.69 6.84 37.20 0.25 0.95 16 25 O -0.38 -4.55 9.06 -35.23 -0.32 -4.87 16 26 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.62 7.69 -51.93 -0.40 0.22 16 29 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.73 6.38 -51.93 -0.33 0.40 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.73 7.68 -51.93 -0.40 0.33 16 33 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.08 1.33 6.19 -51.93 -0.32 1.01 16 35 H 0.39 6.90 8.04 -40.82 -0.33 6.58 16 36 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 1.93 6.83 -51.93 -0.35 1.58 16 39 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 40 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.08 0.93 7.70 -51.93 -0.40 0.53 16 42 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 338.64 15.07 5.10 5.10 Total: -1.00 -30.64 338.64 -7.46 -38.10 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -7.54 Total: 5.28 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: -0.17 Total: -6.52 kcal Atomic # 7 Polarization: -39.85 SS G_CDS: 0.40 Total: -39.45 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -0.23 Total: -18.12 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.64 -7.46 -38.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931158409.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.344 kcal (2) G-P(sol) polarization free energy of solvation -30.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds