Wall clock time and date at job start Mon Mar 30 2020 00:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47084 * 2 1 4 4 C 1.53001 * 109.47266 * 120.00309 * 2 1 3 5 5 H 1.09000 * 109.47929 * 59.97632 * 4 2 1 6 6 C 1.53089 * 109.47832 * 179.97438 * 4 2 1 7 7 C 1.53184 * 109.21202 * 177.57317 * 6 4 2 8 8 H 1.08997 * 109.54155 * 62.91670 * 7 6 4 9 9 C 1.50701 * 109.54435 * 183.18616 * 7 6 4 10 10 O 1.21286 * 119.99517 * 359.97438 * 9 7 6 11 11 N 1.34771 * 120.00243 * 179.97438 * 9 7 6 12 12 C 1.46504 * 119.99991 * 179.97438 * 11 9 7 13 13 H 1.09001 * 109.46836 * 35.00254 * 12 11 9 14 14 C 1.52995 * 109.47197 * 274.99970 * 12 11 9 15 15 C 1.50702 * 109.46909 * 154.99875 * 12 11 9 16 16 H 1.08007 * 119.99819 * 5.46014 * 15 12 11 17 17 C 1.37876 * 119.99975 * 185.46207 * 15 12 11 18 18 N 1.31512 * 119.99771 * 9.55583 * 17 15 12 19 19 Si 1.86797 * 119.99881 * 189.56219 * 17 15 12 20 20 H 1.48498 * 109.47217 * 84.99335 * 19 17 15 21 21 H 1.48507 * 109.46967 * 204.99372 * 19 17 15 22 22 H 1.48498 * 109.47008 * 324.98963 * 19 17 15 23 23 C 1.53190 * 109.02873 * 303.11221 * 7 6 4 24 24 C 1.53090 * 109.21469 * 56.88854 * 23 7 6 25 25 O 1.42900 * 109.41363 * 302.42413 * 24 23 7 26 26 H 1.08997 * 109.47362 * 59.99373 * 1 2 3 27 27 H 1.08994 * 109.47388 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46659 * 299.99965 * 1 2 3 29 29 H 1.09005 * 109.46659 * 240.00035 * 2 1 3 30 30 H 1.09004 * 109.46853 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47353 * 300.00057 * 3 2 1 32 32 H 1.08996 * 109.47427 * 60.00436 * 3 2 1 33 33 H 1.08997 * 109.52586 * 297.50679 * 6 4 2 34 34 H 1.08992 * 109.52639 * 57.63566 * 6 4 2 35 35 H 0.97005 * 119.99627 * 359.97438 * 11 9 7 36 36 H 1.08999 * 109.47031 * 303.67924 * 14 12 11 37 37 H 1.08998 * 109.47200 * 63.67620 * 14 12 11 38 38 H 1.08998 * 109.46912 * 183.67993 * 14 12 11 39 39 H 0.97001 * 119.99656 * 179.97438 * 18 17 15 40 40 H 1.08998 * 109.47281 * 296.98239 * 23 7 6 41 41 H 1.08999 * 109.57301 * 176.85927 * 23 7 6 42 42 H 1.08994 * 109.48257 * 182.44003 * 24 23 7 43 43 H 1.08997 * 109.48049 * 62.40381 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6765 -1.7489 1.2495 6 6 3.5710 -0.7220 1.2490 7 6 4.0749 -1.3916 2.5312 8 1 3.7529 -2.4327 2.5496 9 6 5.5799 -1.3266 2.5760 10 8 6.1911 -0.7976 1.6718 11 7 6.2465 -1.8564 3.6206 12 6 7.7096 -1.7937 3.6638 13 1 8.0465 -0.8583 3.2170 14 6 8.2938 -2.9719 2.8819 15 6 8.1732 -1.8619 5.0961 16 1 7.4583 -2.0322 5.8876 17 6 9.5100 -1.7068 5.3961 18 7 10.3517 -1.3146 4.4648 19 14 10.1255 -2.0538 7.1253 20 1 10.4078 -3.5047 7.2683 21 1 11.3691 -1.2807 7.3725 22 1 9.0888 -1.6518 8.1096 23 6 3.4927 -0.6548 3.7416 24 6 1.9648 -0.6568 3.6454 25 8 1.5655 -0.0470 2.4163 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 1.8933 -0.5139 -0.8901 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 3.9349 -1.2740 0.3825 34 1 3.9357 0.3043 1.2065 35 1 5.7576 -2.2792 4.3439 36 1 7.9051 -3.9058 3.2879 37 1 8.0122 -2.8869 1.8324 38 1 9.3803 -2.9624 2.9686 39 1 11.2921 -1.2052 4.6760 40 1 3.8558 0.3729 3.7505 41 1 3.8007 -1.1579 4.6582 42 1 1.5472 -0.0963 4.4818 43 1 1.5999 -1.6834 3.6773 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931158409.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:46 Heat of formation + Delta-G solvation = -136.186798 kcal Electronic energy + Delta-G solvation = -21540.179548 eV Core-core repulsion = 18390.258887 eV Total energy + Delta-G solvation = -3149.920661 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.34454 -39.82526 -36.73953 -36.16741 -34.76260 -34.16131 -31.12007 -30.79226 -28.02091 -27.34524 -26.78017 -24.56141 -23.42604 -21.93550 -20.87074 -20.69631 -18.90601 -17.65357 -17.23495 -17.03443 -16.70536 -16.21851 -15.85927 -15.63489 -15.14364 -15.04041 -14.64702 -14.42257 -14.34687 -13.86224 -13.77862 -13.34973 -13.02018 -12.92685 -12.85918 -12.72110 -12.66412 -12.50395 -12.37208 -12.19445 -12.11107 -11.73660 -11.57771 -11.44735 -11.22115 -11.17162 -10.75093 -10.58527 -10.26712 -9.76286 -8.22011 -6.35951 1.43772 1.45084 1.54747 1.80099 2.34418 2.59778 2.91131 3.10221 3.61625 3.75492 3.81316 3.93336 4.08744 4.14933 4.30013 4.38376 4.45877 4.53827 4.69387 4.73440 4.75630 4.79776 4.85035 4.87008 4.91174 5.01394 5.03997 5.08292 5.10830 5.17701 5.25665 5.31073 5.40653 5.50585 5.56777 5.59447 5.60787 5.88108 6.01799 6.36748 6.72811 6.95906 7.30989 7.55786 8.87314 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.036616 B = 0.003935 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.518540 B = 7114.699396 C = 7489.351010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.089 4.089 3 C -0.145 4.145 4 C 0.101 3.899 5 H 0.076 0.924 6 C -0.127 4.127 7 C -0.100 4.100 8 H 0.120 0.880 9 C 0.500 3.500 10 O -0.603 6.603 11 N -0.703 5.703 12 C 0.267 3.733 13 H -0.002 1.002 14 C -0.127 4.127 15 C -0.548 4.548 16 H 0.075 0.925 17 C 0.015 3.985 18 N -0.920 5.920 19 Si 0.971 3.029 20 H -0.269 1.269 21 H -0.289 1.289 22 H -0.262 1.262 23 C -0.143 4.143 24 C 0.067 3.933 25 O -0.386 6.386 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.088 0.912 30 H 0.040 0.960 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.405 0.595 36 H 0.049 0.951 37 H 0.014 0.986 38 H 0.048 0.952 39 H 0.265 0.735 40 H 0.051 0.949 41 H 0.093 0.907 42 H 0.112 0.888 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.679 -1.614 -2.919 20.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.107 4.107 3 C -0.202 4.202 4 C 0.044 3.956 5 H 0.093 0.907 6 C -0.165 4.165 7 C -0.121 4.121 8 H 0.138 0.862 9 C 0.287 3.713 10 O -0.485 6.485 11 N -0.351 5.351 12 C 0.163 3.837 13 H 0.016 0.984 14 C -0.186 4.186 15 C -0.586 4.586 16 H 0.093 0.907 17 C -0.186 4.186 18 N -0.558 5.558 19 Si 0.795 3.205 20 H -0.194 1.194 21 H -0.215 1.215 22 H -0.186 1.186 23 C -0.181 4.181 24 C -0.009 4.009 25 O -0.306 6.306 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.106 0.894 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.240 0.760 36 H 0.069 0.931 37 H 0.033 0.967 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.112 0.888 42 H 0.130 0.870 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -20.155 -1.035 -3.578 20.497 hybrid contribution 1.298 -0.274 0.893 1.599 sum -18.858 -1.309 -2.685 19.093 Atomic orbital electron populations 1.21712 0.93432 1.02198 1.02073 1.21194 0.97310 0.96485 0.95751 1.21802 1.00199 0.96327 1.01917 1.22170 0.90737 0.96419 0.86308 0.90656 1.22048 0.96809 1.01225 0.96433 1.21398 0.89233 1.03234 0.98209 0.86172 1.21337 0.91205 0.77213 0.81502 1.90627 1.71499 1.47039 1.39309 1.46264 1.08490 1.57816 1.22556 1.18344 0.76034 0.93648 0.95636 0.98379 1.21830 1.01264 0.98996 0.96531 1.21516 0.93788 1.51140 0.92158 0.90666 1.25837 0.96992 0.93944 1.01792 1.70143 1.04202 1.45512 1.35945 0.85379 0.77643 0.78455 0.79004 1.19440 1.21470 1.18578 1.22196 0.98204 1.00568 0.97147 1.22675 0.91572 0.99733 0.86952 1.87897 1.74295 1.54493 1.13876 0.91960 0.92015 0.92657 0.89397 0.94106 0.91808 0.92802 0.91263 0.92496 0.76010 0.93150 0.96661 0.93292 0.92581 0.92964 0.88842 0.87012 0.90803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.05 71.98 0.65 -1.47 16 2 C -0.09 -1.68 2.81 -10.79 -0.03 -1.71 16 3 C -0.15 -3.11 8.70 71.98 0.63 -2.48 16 4 C 0.10 2.11 2.38 30.62 0.07 2.19 16 5 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 6 C -0.13 -3.48 3.73 30.69 0.11 -3.36 16 7 C -0.10 -2.75 2.62 -11.41 -0.03 -2.78 16 8 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 9 C 0.50 20.14 7.12 87.66 0.62 20.77 16 10 O -0.60 -30.43 15.63 -3.05 -0.05 -30.48 16 11 N -0.70 -29.08 4.98 -446.09 -2.22 -31.30 16 12 C 0.27 13.99 2.42 44.24 0.11 14.09 16 13 H 0.00 -0.11 7.52 -2.39 -0.02 -0.13 16 14 C -0.13 -6.40 9.36 71.98 0.67 -5.72 16 15 C -0.55 -29.04 8.66 25.60 0.22 -28.82 16 16 H 0.08 3.68 7.74 -2.91 -0.02 3.66 16 17 C 0.01 0.79 5.17 84.65 0.44 1.23 16 18 N -0.92 -53.95 12.16 21.45 0.26 -53.69 16 19 Si 0.97 41.94 29.55 68.60 2.03 43.96 16 20 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 21 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 22 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 23 C -0.14 -3.36 5.30 30.69 0.16 -3.19 16 24 C 0.07 1.20 6.84 72.01 0.49 1.69 16 25 O -0.39 -8.47 9.06 -148.98 -1.35 -9.82 16 26 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.05 0.96 7.69 -2.38 -0.02 0.94 16 29 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 30 H 0.04 1.02 6.38 -2.38 -0.02 1.00 16 31 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.05 1.23 7.68 -2.39 -0.02 1.22 16 33 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.06 1.87 6.19 -2.39 -0.01 1.86 16 35 H 0.40 13.77 8.04 -92.70 -0.75 13.03 16 36 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.01 0.72 8.14 -2.39 -0.02 0.71 16 38 H 0.05 2.67 6.83 -2.39 -0.02 2.65 16 39 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 40 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.09 1.93 7.70 -2.39 -0.02 1.91 16 42 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -69.01 338.64 3.02 -65.99 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: 0.23 Total: 24.91 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: 4.12 Total: -9.57 kcal Atomic # 7 Polarization: -83.03 SS G_CDS: -1.96 Total: -84.99 kcal Atomic # 8 Polarization: -38.90 SS G_CDS: -1.40 Total: -40.30 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.96 kcal Total: -69.01 3.02 -65.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931158409.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.201 kcal (2) G-P(sol) polarization free energy of solvation -69.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds