Wall clock time and date at job start Mon Mar 30 2020 00:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.53001 * 109.46723 * 2 1 4 4 C 1.52998 * 109.46744 * 120.00131 * 2 1 3 5 5 H 1.08992 * 109.48344 * 59.97621 * 4 2 1 6 6 C 1.53096 * 109.47617 * 179.97438 * 4 2 1 7 7 C 1.53174 * 109.16135 * 177.60021 * 6 4 2 8 8 H 1.09002 * 109.54562 * 183.06501 * 7 6 4 9 9 C 1.50692 * 109.54291 * 62.89154 * 7 6 4 10 10 O 1.21283 * 120.00394 * 359.97438 * 9 7 6 11 11 N 1.34781 * 120.00286 * 180.02562 * 9 7 6 12 12 C 1.46500 * 120.00196 * 180.02562 * 11 9 7 13 13 H 1.08995 * 109.47460 * 34.99544 * 12 11 9 14 14 C 1.53001 * 109.46970 * 274.99680 * 12 11 9 15 15 C 1.50698 * 109.47276 * 154.99893 * 12 11 9 16 16 H 1.08000 * 119.99727 * 5.41755 * 15 12 11 17 17 C 1.37875 * 120.00003 * 185.14054 * 15 12 11 18 18 N 1.31512 * 119.99965 * 355.40194 * 17 15 12 19 19 Si 1.86801 * 119.99964 * 175.40763 * 17 15 12 20 20 H 1.48496 * 109.47361 * 94.99790 * 19 17 15 21 21 H 1.48497 * 109.46809 * 214.99799 * 19 17 15 22 22 H 1.48501 * 109.47169 * 334.99839 * 19 17 15 23 23 C 1.53181 * 109.04069 * 303.02090 * 7 6 4 24 24 C 1.53098 * 109.16044 * 56.98067 * 23 7 6 25 25 O 1.42901 * 109.41257 * 302.39189 * 24 23 7 26 26 H 1.09002 * 109.46835 * 300.00199 * 1 2 3 27 27 H 1.09003 * 109.46645 * 59.99624 * 1 2 3 28 28 H 1.09002 * 109.46971 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46680 * 240.00323 * 2 1 3 30 30 H 1.08999 * 109.46333 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47166 * 299.99557 * 3 2 1 32 32 H 1.09000 * 109.47279 * 60.00690 * 3 2 1 33 33 H 1.09004 * 109.52247 * 57.69786 * 6 4 2 34 34 H 1.08988 * 109.52569 * 297.51168 * 6 4 2 35 35 H 0.97002 * 119.99906 * 359.97438 * 11 9 7 36 36 H 1.09005 * 109.47100 * 54.94884 * 14 12 11 37 37 H 1.08996 * 109.47676 * 174.94922 * 14 12 11 38 38 H 1.09004 * 109.47455 * 294.95222 * 14 12 11 39 39 H 0.97001 * 119.99666 * 180.02562 * 18 17 15 40 40 H 1.08996 * 109.52334 * 176.88787 * 23 7 6 41 41 H 1.09001 * 109.52323 * 297.07747 * 23 7 6 42 42 H 1.09001 * 109.47892 * 182.40973 * 24 23 7 43 43 H 1.08998 * 109.48083 * 62.37287 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6764 -1.7488 1.2496 6 6 3.5710 -0.7220 1.2491 7 6 4.0735 -1.3924 2.5314 8 1 5.1622 -1.3478 2.5637 9 6 3.6271 -2.8314 2.5562 10 8 2.9709 -3.2787 1.6395 11 7 3.9561 -3.6213 3.5975 12 6 3.5226 -5.0205 3.6213 13 1 3.5296 -5.4204 2.6074 14 6 2.1061 -5.1058 4.1933 15 6 4.4619 -5.8229 4.4843 16 1 5.2456 -5.3256 5.0365 17 6 4.3173 -7.1912 4.5733 18 7 3.3062 -7.7856 3.9785 19 14 5.5576 -8.2006 5.5389 20 1 5.0548 -8.4135 6.9198 21 1 5.7509 -9.5145 4.8745 22 1 6.8529 -7.4762 5.5899 23 6 3.4926 -0.6547 3.7417 24 6 1.9647 -0.6567 3.6455 25 8 1.5654 -0.0469 2.4163 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 3.9357 0.3044 1.2077 34 1 3.9349 -1.2740 0.3827 35 1 4.4806 -3.2636 4.3309 36 1 1.4439 -4.4545 3.6227 37 1 1.7492 -6.1336 4.1283 38 1 2.1158 -4.7899 5.2365 39 1 3.2043 -8.7482 4.0414 40 1 3.8006 -1.1587 4.6577 41 1 3.8557 0.3730 3.7506 42 1 1.5471 -0.0961 4.4819 43 1 1.5998 -1.6833 3.6774 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931158411.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:48 Heat of formation + Delta-G solvation = -111.947691 kcal Electronic energy + Delta-G solvation = -22122.591093 eV Core-core repulsion = 18973.721519 eV Total energy + Delta-G solvation = -3148.869574 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.32521 -38.03450 -35.14387 -34.83105 -33.45731 -32.28599 -29.90493 -28.91912 -27.09918 -25.37560 -25.22585 -23.46941 -22.31969 -20.35720 -19.79269 -19.02685 -16.84238 -16.34483 -15.79280 -15.63625 -15.20795 -14.88995 -14.44294 -14.26842 -13.98911 -13.56047 -13.29597 -13.06169 -12.49314 -12.45206 -12.29686 -11.96089 -11.84836 -11.58618 -11.51926 -11.28976 -11.10501 -10.95131 -10.81336 -10.74695 -10.61769 -10.39717 -10.34485 -10.28059 -10.00749 -9.29749 -9.03247 -8.74864 -8.57637 -7.90209 -6.15105 -4.23353 3.22332 3.29809 3.32124 3.36554 3.97225 4.08540 4.36618 4.72169 4.94612 4.96854 5.02514 5.15615 5.16529 5.18285 5.39798 5.50022 5.57247 5.73881 5.74549 5.78871 5.80666 5.92366 5.98120 6.02719 6.05249 6.07248 6.17917 6.25249 6.31738 6.49539 6.51853 6.80056 6.91295 7.12611 7.44822 7.48854 7.53210 7.68220 7.87209 8.09662 8.65630 8.76901 9.11889 9.44300 10.91864 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.035938 B = 0.004438 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.926863 B = 6308.107793 C = 6498.689073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 C -0.144 4.144 4 C 0.085 3.915 5 H 0.088 0.912 6 C -0.126 4.126 7 C -0.116 4.116 8 H 0.094 0.906 9 C 0.504 3.496 10 O -0.552 6.552 11 N -0.708 5.708 12 C 0.264 3.736 13 H 0.050 0.950 14 C -0.141 4.141 15 C -0.535 4.535 16 H 0.060 0.940 17 C 0.067 3.933 18 N -0.882 5.882 19 Si 0.900 3.100 20 H -0.280 1.280 21 H -0.284 1.284 22 H -0.273 1.273 23 C -0.143 4.143 24 C 0.060 3.940 25 O -0.379 6.379 26 H 0.061 0.939 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.078 0.922 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.387 0.613 36 H 0.013 0.987 37 H 0.082 0.918 38 H 0.027 0.973 39 H 0.264 0.736 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.091 0.909 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.849 16.024 -2.834 16.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.104 4.104 3 C -0.201 4.201 4 C 0.028 3.972 5 H 0.106 0.894 6 C -0.164 4.164 7 C -0.138 4.138 8 H 0.112 0.888 9 C 0.289 3.711 10 O -0.432 6.432 11 N -0.355 5.355 12 C 0.162 3.838 13 H 0.067 0.933 14 C -0.200 4.200 15 C -0.573 4.573 16 H 0.079 0.921 17 C -0.137 4.137 18 N -0.520 5.520 19 Si 0.728 3.272 20 H -0.206 1.206 21 H -0.210 1.210 22 H -0.198 1.198 23 C -0.181 4.181 24 C -0.017 4.017 25 O -0.299 6.299 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.096 0.904 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.219 0.781 36 H 0.032 0.968 37 H 0.101 0.899 38 H 0.047 0.953 39 H 0.074 0.926 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.109 0.891 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.520 15.635 -3.524 16.099 hybrid contribution 1.228 -0.781 1.026 1.781 sum -0.292 14.854 -2.498 15.065 Atomic orbital electron populations 1.21755 0.94926 1.01812 1.01520 1.21127 0.96379 0.96472 0.96471 1.21825 1.00725 0.96007 1.01561 1.22398 0.92520 0.97420 0.84901 0.89383 1.22001 0.97064 1.00277 0.97055 1.21456 1.01740 0.93550 0.97036 0.88829 1.20377 0.80516 0.87352 0.82879 1.90598 1.40202 1.75571 1.36810 1.46556 1.53842 1.13867 1.21211 1.18739 0.91793 0.75107 0.98164 0.93261 1.22044 0.97857 1.02295 0.97767 1.21200 1.15072 0.92168 1.28895 0.92147 1.24889 0.95518 0.97677 0.95572 1.69933 1.28622 1.10243 1.43155 0.86456 0.81409 0.79633 0.79738 1.20636 1.21001 1.19818 1.22142 0.97328 1.01089 0.97574 1.22514 0.93462 0.98684 0.87014 1.87815 1.74882 1.53756 1.13402 0.92000 0.93239 0.92780 0.90358 0.92772 0.93366 0.91987 0.90916 0.90491 0.78057 0.96805 0.89898 0.95335 0.92594 0.90450 0.90520 0.89106 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.05 37.16 0.34 -1.39 16 2 C -0.09 -1.08 2.81 -90.61 -0.25 -1.34 16 3 C -0.14 -1.55 8.70 37.16 0.32 -1.23 16 4 C 0.08 1.26 2.09 -26.68 -0.06 1.21 16 5 H 0.09 1.63 5.80 -51.93 -0.30 1.32 16 6 C -0.13 -1.75 4.27 -26.59 -0.11 -1.86 16 7 C -0.12 -1.68 3.04 -91.59 -0.28 -1.95 16 8 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 9 C 0.50 9.72 5.78 -10.99 -0.06 9.66 16 10 O -0.55 -12.64 13.50 5.56 0.08 -12.57 16 11 N -0.71 -14.39 4.95 -54.94 -0.27 -14.66 16 12 C 0.26 6.63 2.51 -69.08 -0.17 6.46 16 13 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 14 C -0.14 -3.46 9.25 37.16 0.34 -3.12 16 15 C -0.53 -14.07 8.67 -34.44 -0.30 -14.37 16 16 H 0.06 1.52 7.72 -52.49 -0.41 1.11 16 17 C 0.07 1.80 5.36 -17.82 -0.10 1.70 16 18 N -0.88 -24.86 11.58 55.43 0.64 -24.21 16 19 Si 0.90 20.57 29.54 -169.99 -5.02 15.54 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 23 C -0.14 -1.78 5.57 -26.59 -0.15 -1.92 16 24 C 0.06 0.83 6.62 37.21 0.25 1.08 16 25 O -0.38 -5.59 9.06 -35.23 -0.32 -5.91 16 26 H 0.06 0.77 7.69 -51.93 -0.40 0.37 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.05 0.55 6.38 -51.93 -0.33 0.22 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.71 7.68 -51.93 -0.40 0.31 16 33 H 0.07 0.87 6.32 -51.93 -0.33 0.54 16 34 H 0.08 1.12 8.03 -51.94 -0.42 0.71 16 35 H 0.39 6.85 7.94 -40.82 -0.32 6.53 16 36 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.08 2.22 6.45 -51.93 -0.33 1.89 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 40 H 0.08 0.90 7.52 -51.93 -0.39 0.51 16 41 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.05 0.88 7.38 -51.93 -0.38 0.49 16 LS Contribution 331.72 15.07 5.00 5.00 Total: -1.00 -29.58 331.72 -7.47 -37.05 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -7.35 Total: 6.84 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: -0.23 Total: -7.08 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 0.37 Total: -38.88 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.24 Total: -18.48 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.58 -7.47 -37.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931158411.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.897 kcal (2) G-P(sol) polarization free energy of solvation -29.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds