Wall clock time and date at job start Mon Mar 30 2020 00:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.53001 * 109.46723 * 2 1 4 4 C 1.52998 * 109.46744 * 120.00131 * 2 1 3 5 5 H 1.08992 * 109.48344 * 59.97621 * 4 2 1 6 6 C 1.53096 * 109.47617 * 179.97438 * 4 2 1 7 7 C 1.53174 * 109.16135 * 177.60021 * 6 4 2 8 8 H 1.09002 * 109.54562 * 183.06501 * 7 6 4 9 9 C 1.50692 * 109.54291 * 62.89154 * 7 6 4 10 10 O 1.21283 * 120.00394 * 359.97438 * 9 7 6 11 11 N 1.34781 * 120.00286 * 180.02562 * 9 7 6 12 12 C 1.46500 * 120.00196 * 180.02562 * 11 9 7 13 13 H 1.08995 * 109.47460 * 34.99544 * 12 11 9 14 14 C 1.53001 * 109.46970 * 274.99680 * 12 11 9 15 15 C 1.50698 * 109.47276 * 154.99893 * 12 11 9 16 16 H 1.08000 * 119.99727 * 5.41755 * 15 12 11 17 17 C 1.37875 * 120.00003 * 185.14054 * 15 12 11 18 18 N 1.31512 * 119.99965 * 355.40194 * 17 15 12 19 19 Si 1.86801 * 119.99964 * 175.40763 * 17 15 12 20 20 H 1.48496 * 109.47361 * 94.99790 * 19 17 15 21 21 H 1.48497 * 109.46809 * 214.99799 * 19 17 15 22 22 H 1.48501 * 109.47169 * 334.99839 * 19 17 15 23 23 C 1.53181 * 109.04069 * 303.02090 * 7 6 4 24 24 C 1.53098 * 109.16044 * 56.98067 * 23 7 6 25 25 O 1.42901 * 109.41257 * 302.39189 * 24 23 7 26 26 H 1.09002 * 109.46835 * 300.00199 * 1 2 3 27 27 H 1.09003 * 109.46645 * 59.99624 * 1 2 3 28 28 H 1.09002 * 109.46971 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46680 * 240.00323 * 2 1 3 30 30 H 1.08999 * 109.46333 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47166 * 299.99557 * 3 2 1 32 32 H 1.09000 * 109.47279 * 60.00690 * 3 2 1 33 33 H 1.09004 * 109.52247 * 57.69786 * 6 4 2 34 34 H 1.08988 * 109.52569 * 297.51168 * 6 4 2 35 35 H 0.97002 * 119.99906 * 359.97438 * 11 9 7 36 36 H 1.09005 * 109.47100 * 54.94884 * 14 12 11 37 37 H 1.08996 * 109.47676 * 174.94922 * 14 12 11 38 38 H 1.09004 * 109.47455 * 294.95222 * 14 12 11 39 39 H 0.97001 * 119.99666 * 180.02562 * 18 17 15 40 40 H 1.08996 * 109.52334 * 176.88787 * 23 7 6 41 41 H 1.09001 * 109.52323 * 297.07747 * 23 7 6 42 42 H 1.09001 * 109.47892 * 182.40973 * 24 23 7 43 43 H 1.08998 * 109.48083 * 62.37287 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6764 -1.7488 1.2496 6 6 3.5710 -0.7220 1.2491 7 6 4.0735 -1.3924 2.5314 8 1 5.1622 -1.3478 2.5637 9 6 3.6271 -2.8314 2.5562 10 8 2.9709 -3.2787 1.6395 11 7 3.9561 -3.6213 3.5975 12 6 3.5226 -5.0205 3.6213 13 1 3.5296 -5.4204 2.6074 14 6 2.1061 -5.1058 4.1933 15 6 4.4619 -5.8229 4.4843 16 1 5.2456 -5.3256 5.0365 17 6 4.3173 -7.1912 4.5733 18 7 3.3062 -7.7856 3.9785 19 14 5.5576 -8.2006 5.5389 20 1 5.0548 -8.4135 6.9198 21 1 5.7509 -9.5145 4.8745 22 1 6.8529 -7.4762 5.5899 23 6 3.4926 -0.6547 3.7417 24 6 1.9647 -0.6567 3.6455 25 8 1.5654 -0.0469 2.4163 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 3.9357 0.3044 1.2077 34 1 3.9349 -1.2740 0.3827 35 1 4.4806 -3.2636 4.3309 36 1 1.4439 -4.4545 3.6227 37 1 1.7492 -6.1336 4.1283 38 1 2.1158 -4.7899 5.2365 39 1 3.2043 -8.7482 4.0414 40 1 3.8006 -1.1587 4.6577 41 1 3.8557 0.3730 3.7506 42 1 1.5471 -0.0961 4.4819 43 1 1.5998 -1.6833 3.6774 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931158411.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:48 Heat of formation + Delta-G solvation = -130.820510 kcal Electronic energy + Delta-G solvation = -22123.409480 eV Core-core repulsion = 18973.721519 eV Total energy + Delta-G solvation = -3149.687961 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.64677 -39.46965 -36.70781 -36.17641 -34.75375 -34.14596 -31.10124 -30.69513 -28.01890 -27.35660 -26.54360 -24.57947 -23.82247 -22.01097 -20.96966 -20.57138 -18.58927 -17.52631 -17.27258 -17.17163 -16.79737 -16.07098 -16.03032 -15.65690 -15.07990 -14.96816 -14.55062 -14.44238 -14.17514 -13.92124 -13.44066 -13.34724 -13.14599 -12.96756 -12.86269 -12.80803 -12.66928 -12.52973 -12.34636 -12.28107 -12.14509 -11.78915 -11.61727 -11.44911 -11.19232 -11.09060 -10.69542 -10.56246 -10.10206 -9.71045 -8.20080 -6.36506 1.43079 1.44485 1.55385 1.83551 2.34538 2.63854 2.89421 3.11476 3.61033 3.80861 3.85270 3.97315 4.07343 4.19722 4.29139 4.36586 4.48938 4.63335 4.72460 4.74690 4.78970 4.85255 4.86211 4.92637 4.95727 4.97611 5.06154 5.08074 5.10155 5.13544 5.22833 5.28475 5.42085 5.47808 5.57397 5.62420 5.65166 5.89713 6.06088 6.34744 6.72449 6.98114 7.31770 7.58167 8.87323 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.035938 B = 0.004438 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.926863 B = 6308.107793 C = 6498.689073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.088 4.088 3 C -0.136 4.136 4 C 0.085 3.915 5 H 0.042 0.958 6 C -0.123 4.123 7 C -0.109 4.109 8 H 0.122 0.878 9 C 0.499 3.501 10 O -0.594 6.594 11 N -0.704 5.704 12 C 0.272 3.728 13 H -0.003 1.003 14 C -0.125 4.125 15 C -0.546 4.546 16 H 0.074 0.926 17 C 0.014 3.986 18 N -0.919 5.919 19 Si 0.972 3.028 20 H -0.273 1.273 21 H -0.287 1.287 22 H -0.262 1.262 23 C -0.136 4.136 24 C 0.054 3.946 25 O -0.381 6.381 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.035 0.965 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.104 0.896 34 H 0.064 0.936 35 H 0.403 0.597 36 H 0.009 0.991 37 H 0.056 0.944 38 H 0.041 0.959 39 H 0.265 0.735 40 H 0.089 0.911 41 H 0.109 0.891 42 H 0.117 0.883 43 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.983 18.418 -1.721 18.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.107 4.107 3 C -0.193 4.193 4 C 0.028 3.972 5 H 0.060 0.940 6 C -0.161 4.161 7 C -0.130 4.130 8 H 0.140 0.860 9 C 0.286 3.714 10 O -0.476 6.476 11 N -0.353 5.353 12 C 0.168 3.832 13 H 0.015 0.985 14 C -0.184 4.184 15 C -0.585 4.585 16 H 0.092 0.908 17 C -0.187 4.187 18 N -0.557 5.557 19 Si 0.796 3.204 20 H -0.198 1.198 21 H -0.213 1.213 22 H -0.186 1.186 23 C -0.173 4.173 24 C -0.023 4.023 25 O -0.300 6.300 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.054 0.946 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.122 0.878 34 H 0.083 0.917 35 H 0.238 0.762 36 H 0.028 0.972 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.074 0.926 40 H 0.107 0.893 41 H 0.128 0.872 42 H 0.135 0.865 43 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 0.329 18.070 -2.394 18.231 hybrid contribution 0.581 -1.528 0.629 1.751 sum 0.910 16.542 -1.765 16.661 Atomic orbital electron populations 1.21733 0.94889 1.00869 1.02271 1.21168 0.96521 0.97776 0.95210 1.21761 1.01226 0.94169 1.02159 1.22280 0.93443 0.95429 0.86083 0.94030 1.22016 0.96086 1.01688 0.96311 1.21522 1.03387 0.89542 0.98551 0.86003 1.21352 0.79251 0.89266 0.81525 1.90594 1.41832 1.76876 1.38302 1.46294 1.54345 1.12194 1.22461 1.18295 0.92165 0.77675 0.95082 0.98525 1.21837 0.97667 1.00489 0.98363 1.21541 1.15392 0.92675 1.28853 0.90764 1.25822 0.97255 0.99001 0.96582 1.70089 1.30474 1.10490 1.44623 0.85336 0.79180 0.77605 0.78243 1.19806 1.21289 1.18568 1.22165 0.95679 1.02689 0.96788 1.22649 0.95027 0.97067 0.87507 1.87815 1.75298 1.53319 1.13567 0.92515 0.91134 0.94604 0.90451 0.91846 0.91752 0.92392 0.87766 0.91722 0.76171 0.97193 0.92539 0.94005 0.92620 0.89263 0.87239 0.86531 0.96589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 9.05 71.99 0.65 -2.71 16 2 C -0.09 -2.15 2.81 -10.79 -0.03 -2.19 16 3 C -0.14 -2.57 8.70 71.98 0.63 -1.95 16 4 C 0.09 2.53 2.09 30.63 0.06 2.59 16 5 H 0.04 1.64 5.80 -2.39 -0.01 1.62 16 6 C -0.12 -3.22 4.27 30.68 0.13 -3.09 16 7 C -0.11 -2.91 3.04 -11.42 -0.03 -2.95 16 8 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 9 C 0.50 19.45 5.78 87.65 0.51 19.96 16 10 O -0.59 -28.66 13.50 -3.04 -0.04 -28.70 16 11 N -0.70 -28.75 4.95 -446.10 -2.21 -30.96 16 12 C 0.27 14.10 2.51 44.24 0.11 14.21 16 13 H 0.00 -0.20 7.58 -2.39 -0.02 -0.22 16 14 C -0.12 -6.37 9.25 71.98 0.67 -5.70 16 15 C -0.55 -28.83 8.67 25.60 0.22 -28.61 16 16 H 0.07 3.63 7.72 -2.91 -0.02 3.60 16 17 C 0.01 0.73 5.36 84.65 0.45 1.18 16 18 N -0.92 -53.21 11.58 21.45 0.25 -52.96 16 19 Si 0.97 41.95 29.54 68.60 2.03 43.98 16 20 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 21 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 22 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 23 C -0.14 -2.93 5.57 30.69 0.17 -2.76 16 24 C 0.05 1.43 6.62 72.01 0.48 1.91 16 25 O -0.38 -10.82 9.06 -148.98 -1.35 -12.17 16 26 H 0.06 1.40 7.69 -2.39 -0.02 1.38 16 27 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.06 1.08 6.38 -2.39 -0.02 1.06 16 31 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.06 1.16 7.68 -2.39 -0.02 1.14 16 33 H 0.10 2.09 6.32 -2.38 -0.02 2.08 16 34 H 0.06 1.85 8.03 -2.39 -0.02 1.83 16 35 H 0.40 13.71 7.94 -92.71 -0.74 12.98 16 36 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 37 H 0.06 3.17 6.45 -2.39 -0.02 3.15 16 38 H 0.04 1.96 8.14 -2.38 -0.02 1.94 16 39 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 40 H 0.09 1.75 7.52 -2.39 -0.02 1.73 16 41 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 43 H 0.02 0.53 7.38 -2.39 -0.02 0.52 16 Total: -1.00 -67.30 331.72 2.94 -64.36 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: 0.25 Total: 26.55 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: 4.01 Total: -10.09 kcal Atomic # 7 Polarization: -81.96 SS G_CDS: -1.96 Total: -83.92 kcal Atomic # 8 Polarization: -39.48 SS G_CDS: -1.39 Total: -40.87 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -67.30 2.94 -64.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931158411.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.459 kcal (2) G-P(sol) polarization free energy of solvation -67.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds