Wall clock time and date at job start Mon Mar 30 2020 00:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.47086 * 2 1 4 4 C 1.53000 * 109.46726 * 120.00024 * 2 1 3 5 5 H 1.09003 * 109.48233 * 300.02237 * 4 2 1 6 6 C 1.53093 * 109.47680 * 180.02562 * 4 2 1 7 7 C 1.53178 * 109.16093 * 182.40932 * 6 4 2 8 8 H 1.09008 * 109.54442 * 297.01650 * 7 6 4 9 9 C 1.50697 * 109.54282 * 176.84755 * 7 6 4 10 10 O 1.21281 * 120.00311 * 0.17247 * 9 7 6 11 11 N 1.34781 * 119.99965 * 180.17617 * 9 7 6 12 12 C 1.46506 * 120.00067 * 179.97438 * 11 9 7 13 13 H 1.09005 * 109.46943 * 34.99959 * 12 11 9 14 14 C 1.53000 * 109.47074 * 275.00178 * 12 11 9 15 15 C 1.50696 * 109.46871 * 154.99639 * 12 11 9 16 16 H 1.07999 * 120.00319 * 0.02562 * 15 12 11 17 17 C 1.37885 * 119.99717 * 180.02562 * 15 12 11 18 18 N 1.31516 * 119.99913 * 180.02562 * 17 15 12 19 19 Si 1.86798 * 119.99766 * 0.02562 * 17 15 12 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 C 1.53172 * 109.11141 * 56.93103 * 7 6 4 24 24 C 1.53100 * 109.16120 * 303.15399 * 23 7 6 25 25 O 1.42898 * 109.48157 * 60.05690 * 4 2 1 26 26 H 1.08996 * 109.46920 * 60.00053 * 1 2 3 27 27 H 1.08997 * 109.46916 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47167 * 300.00232 * 1 2 3 29 29 H 1.08997 * 109.47216 * 239.99441 * 2 1 3 30 30 H 1.09001 * 109.46721 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47198 * 299.99777 * 3 2 1 32 32 H 1.08999 * 109.46881 * 59.99960 * 3 2 1 33 33 H 1.09001 * 109.52761 * 62.50300 * 6 4 2 34 34 H 1.09003 * 109.57193 * 302.34075 * 6 4 2 35 35 H 0.97000 * 119.99961 * 359.97438 * 11 9 7 36 36 H 1.08997 * 109.46749 * 299.99711 * 14 12 11 37 37 H 1.08996 * 109.47024 * 59.99854 * 14 12 11 38 38 H 1.08998 * 109.46637 * 179.97438 * 14 12 11 39 39 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.52245 * 62.97498 * 23 7 6 41 41 H 1.09008 * 109.52338 * 183.15859 * 23 7 6 42 42 H 1.09005 * 109.40521 * 297.49271 * 24 23 7 43 43 H 1.08997 * 109.49741 * 177.51194 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6764 -0.2078 2.1394 6 6 3.5709 -0.7208 1.2498 7 6 4.0734 -1.4964 2.4714 8 1 3.7519 -0.9907 3.3820 9 6 5.5784 -1.5676 2.4392 10 8 6.1909 -1.0470 1.5310 11 7 6.2438 -2.2101 3.4195 12 6 7.7068 -2.2799 3.3879 13 1 8.1057 -1.3553 2.9705 14 6 8.1424 -3.4614 2.5189 15 6 8.2312 -2.4660 4.7884 16 1 7.5435 -2.5267 5.6189 17 6 9.5890 -2.5588 5.0094 18 7 10.0467 -2.7217 6.2316 19 14 10.7785 -2.4531 3.5730 20 1 11.0248 -3.8143 3.0330 21 1 10.1952 -1.5966 2.5093 22 1 12.0612 -1.8642 4.0348 23 6 3.4925 -2.9133 2.4397 24 6 1.9646 -2.8290 2.3910 25 8 1.5648 -2.0689 1.2488 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 3.1301 1.4425 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.9349 0.3056 1.2950 34 1 3.9365 -1.1974 0.3402 35 1 5.7540 -2.6262 4.1460 36 1 7.7435 -4.3859 2.9363 37 1 7.7631 -3.3267 1.5059 38 1 9.2309 -3.5130 2.4950 39 1 11.0019 -2.7874 6.3870 40 1 3.8556 -3.4361 1.5549 41 1 3.8005 -3.4534 3.3351 42 1 1.5996 -2.3435 3.2962 43 1 1.5468 -3.8334 2.3237 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931158412.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:50 Heat of formation + Delta-G solvation = -129.565553 kcal Electronic energy + Delta-G solvation = -21551.868909 eV Core-core repulsion = 18402.235367 eV Total energy + Delta-G solvation = -3149.633542 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.39393 -39.87121 -36.89765 -36.31395 -34.83013 -34.29486 -31.66631 -30.98521 -28.07883 -27.26913 -26.63246 -24.65011 -23.31250 -21.85666 -21.12530 -20.86172 -19.04821 -17.86476 -17.44635 -17.33317 -16.90278 -16.25730 -15.77509 -15.44583 -15.36260 -15.03722 -14.72341 -14.58580 -14.46702 -14.14890 -13.98319 -13.64271 -13.37910 -13.18472 -12.96467 -12.82575 -12.64921 -12.36491 -12.18000 -12.14706 -11.96612 -11.71953 -11.62618 -11.42852 -11.31892 -11.19820 -10.89542 -10.81129 -10.30910 -9.89427 -8.40333 -6.46090 1.25185 1.33569 1.42893 1.72188 2.24036 2.40678 2.83809 2.95854 3.59113 3.67919 3.79370 3.92721 4.08303 4.12687 4.30349 4.34011 4.40983 4.44140 4.50421 4.56832 4.63625 4.69071 4.74202 4.80538 4.82734 4.85993 4.97010 5.03131 5.07205 5.07509 5.15531 5.24173 5.28595 5.31741 5.40671 5.44892 5.51110 5.63006 6.11647 6.34191 6.55452 6.85163 7.17225 7.42959 8.74838 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.035633 B = 0.004092 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.610826 B = 6840.976040 C = 7187.894709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.089 4.089 3 C -0.148 4.148 4 C 0.101 3.899 5 H 0.071 0.929 6 C -0.124 4.124 7 C -0.103 4.103 8 H 0.116 0.884 9 C 0.506 3.494 10 O -0.596 6.596 11 N -0.699 5.699 12 C 0.241 3.759 13 H 0.020 0.980 14 C -0.154 4.154 15 C -0.533 4.533 16 H 0.058 0.942 17 C 0.030 3.970 18 N -0.932 5.932 19 Si 0.938 3.062 20 H -0.259 1.259 21 H -0.265 1.265 22 H -0.291 1.291 23 C -0.143 4.143 24 C 0.065 3.935 25 O -0.391 6.391 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.055 0.945 35 H 0.407 0.593 36 H 0.066 0.934 37 H 0.042 0.958 38 H 0.040 0.960 39 H 0.271 0.729 40 H 0.060 0.940 41 H 0.094 0.906 42 H 0.070 0.930 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.957 2.433 -9.364 22.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.107 4.107 3 C -0.205 4.205 4 C 0.043 3.957 5 H 0.089 0.911 6 C -0.162 4.162 7 C -0.124 4.124 8 H 0.134 0.866 9 C 0.293 3.707 10 O -0.477 6.477 11 N -0.347 5.347 12 C 0.135 3.865 13 H 0.037 0.963 14 C -0.212 4.212 15 C -0.571 4.571 16 H 0.077 0.923 17 C -0.170 4.170 18 N -0.571 5.571 19 Si 0.765 3.235 20 H -0.185 1.185 21 H -0.190 1.190 22 H -0.218 1.218 23 C -0.181 4.181 24 C -0.011 4.011 25 O -0.310 6.310 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.074 0.926 35 H 0.243 0.757 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.113 0.887 42 H 0.088 0.912 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -19.468 2.692 -10.017 22.059 hybrid contribution 1.339 -0.130 0.273 1.372 sum -18.129 2.562 -9.744 20.741 Atomic orbital electron populations 1.21718 0.93537 1.02049 1.02163 1.21098 0.97225 0.95940 0.96452 1.21875 1.00954 0.94697 1.02984 1.22195 0.91013 0.83240 0.99246 0.91071 1.22029 0.96554 1.00798 0.96846 1.21413 0.89326 0.99676 1.01959 0.86590 1.21257 0.91150 0.77070 0.81183 1.90621 1.71190 1.48788 1.37118 1.46041 1.07609 1.55067 1.26030 1.18755 0.78645 0.94320 0.94731 0.96252 1.22331 0.99642 1.00437 0.98793 1.21250 0.92922 1.50925 0.92012 0.92341 1.25538 0.99773 0.93854 0.97805 1.69970 1.14942 1.50439 1.21751 0.86020 0.78207 0.79275 0.79956 1.18510 1.19037 1.21839 1.22208 0.97960 0.94109 1.03847 1.22693 0.91948 0.97507 0.88967 1.87894 1.74439 1.23725 1.44949 0.91883 0.92648 0.92203 0.91665 0.93172 0.91117 0.91634 0.90699 0.92634 0.75732 0.91501 0.93890 0.94130 0.92007 0.92092 0.88715 0.91203 0.86789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.05 71.98 0.65 -1.44 16 2 C -0.09 -1.62 2.72 -10.79 -0.03 -1.65 16 3 C -0.15 -2.43 8.84 71.98 0.64 -1.79 16 4 C 0.10 2.04 2.22 30.63 0.07 2.11 16 5 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 6 C -0.12 -3.18 3.59 30.68 0.11 -3.07 16 7 C -0.10 -2.66 2.61 -11.42 -0.03 -2.69 16 8 H 0.12 2.52 8.14 -2.38 -0.02 2.50 16 9 C 0.51 18.70 7.12 87.66 0.62 19.32 16 10 O -0.60 -27.07 15.63 -3.03 -0.05 -27.12 16 11 N -0.70 -27.13 4.98 -446.08 -2.22 -29.35 16 12 C 0.24 11.48 2.15 44.24 0.10 11.58 16 13 H 0.02 1.05 6.63 -2.38 -0.02 1.03 16 14 C -0.15 -6.76 8.97 71.98 0.65 -6.12 16 15 C -0.53 -28.97 9.31 25.60 0.24 -28.73 16 16 H 0.06 3.35 7.98 -2.91 -0.02 3.33 16 17 C 0.03 1.70 5.45 84.66 0.46 2.17 16 18 N -0.93 -55.65 13.96 21.45 0.30 -55.35 16 19 Si 0.94 44.94 24.37 68.60 1.67 46.62 16 20 H -0.26 -11.67 6.87 99.48 0.68 -10.99 16 21 H -0.27 -12.77 6.53 99.48 0.65 -12.12 16 22 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 23 C -0.14 -3.04 5.30 30.69 0.16 -2.88 16 24 C 0.07 1.11 6.84 72.02 0.49 1.60 16 25 O -0.39 -8.34 9.74 -148.98 -1.45 -9.79 16 26 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.05 0.93 7.68 -2.39 -0.02 0.91 16 28 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 29 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.05 0.96 6.49 -2.39 -0.02 0.95 16 31 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.07 2.00 6.57 -2.39 -0.02 1.98 16 34 H 0.05 1.67 8.02 -2.39 -0.02 1.65 16 35 H 0.41 13.60 8.04 -92.71 -0.75 12.86 16 36 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 37 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.04 1.82 3.28 -2.39 -0.01 1.81 16 39 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 40 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.09 1.75 7.68 -2.38 -0.02 1.73 16 42 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 43 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -67.61 331.74 2.54 -65.07 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: 0.16 Total: 21.51 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: 4.13 Total: -11.59 kcal Atomic # 7 Polarization: -82.78 SS G_CDS: -1.92 Total: -84.70 kcal Atomic # 8 Polarization: -35.41 SS G_CDS: -1.50 Total: -36.91 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.67 Total: 46.62 kcal Total: -67.61 2.54 -65.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931158412.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.494 kcal (2) G-P(sol) polarization free energy of solvation -67.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds