Wall clock time and date at job start Mon Mar 30 2020 00:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47215 * 2 1 4 4 C 1.52998 * 109.47139 * 120.00333 * 2 1 3 5 5 H 1.08997 * 109.48161 * 300.01777 * 4 2 1 6 6 C 1.53097 * 109.47989 * 180.02562 * 4 2 1 7 7 C 1.53174 * 109.16185 * 182.40944 * 6 4 2 8 8 H 1.08999 * 109.54245 * 176.84623 * 7 6 4 9 9 C 1.50703 * 109.61586 * 297.06250 * 7 6 4 10 10 O 1.21276 * 120.00145 * 359.60644 * 9 7 6 11 11 N 1.34780 * 119.99952 * 179.60109 * 9 7 6 12 12 C 1.46500 * 120.00046 * 180.02562 * 11 9 7 13 13 H 1.09007 * 109.46960 * 34.99716 * 12 11 9 14 14 C 1.53003 * 109.47032 * 275.00529 * 12 11 9 15 15 C 1.50700 * 109.47290 * 155.00113 * 12 11 9 16 16 H 1.08001 * 119.99554 * 359.97438 * 15 12 11 17 17 C 1.37871 * 119.99917 * 180.02562 * 15 12 11 18 18 N 1.31517 * 120.00087 * 359.97438 * 17 15 12 19 19 Si 1.86800 * 119.99904 * 180.02562 * 17 15 12 20 20 H 1.48506 * 109.47153 * 59.99812 * 19 17 15 21 21 H 1.48501 * 109.47126 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.46982 * 299.99857 * 19 17 15 23 23 C 1.53176 * 109.04061 * 56.97999 * 7 6 4 24 24 C 1.53091 * 109.21206 * 302.98570 * 23 7 6 25 25 O 1.42902 * 109.48518 * 60.05571 * 4 2 1 26 26 H 1.09007 * 109.47081 * 299.99553 * 1 2 3 27 27 H 1.08994 * 109.47548 * 60.00002 * 1 2 3 28 28 H 1.08997 * 109.47369 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46614 * 240.00202 * 2 1 3 30 30 H 1.08994 * 109.46862 * 300.00418 * 3 2 1 31 31 H 1.08997 * 109.46729 * 60.00227 * 3 2 1 32 32 H 1.09003 * 109.46976 * 180.02562 * 3 2 1 33 33 H 1.08995 * 109.52587 * 62.49797 * 6 4 2 34 34 H 1.09001 * 109.52108 * 302.31042 * 6 4 2 35 35 H 0.97000 * 120.00110 * 0.02562 * 11 9 7 36 36 H 1.09000 * 109.46778 * 299.99725 * 14 12 11 37 37 H 1.08997 * 109.47445 * 59.99153 * 14 12 11 38 38 H 1.09000 * 109.47226 * 180.02562 * 14 12 11 39 39 H 0.96997 * 119.99554 * 180.02562 * 18 17 15 40 40 H 1.09002 * 109.52410 * 62.92413 * 23 7 6 41 41 H 1.09004 * 109.52533 * 183.05059 * 23 7 6 42 42 H 1.09007 * 109.48127 * 177.62276 * 24 23 7 43 43 H 1.09000 * 109.48171 * 297.66002 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6765 -0.2079 2.1393 6 6 3.5709 -0.7209 1.2497 7 6 4.0735 -1.4964 2.4712 8 1 5.1620 -1.5480 2.4478 9 6 3.6289 -0.7994 3.7312 10 8 2.9798 0.2227 3.6619 11 7 3.9525 -1.3119 4.9350 12 6 3.5198 -0.6345 6.1598 13 1 2.5381 -0.1884 6.0008 14 6 4.5256 0.4610 6.5193 15 6 3.4414 -1.6335 7.2854 16 1 3.6887 -2.6694 7.1061 17 6 3.0529 -1.2252 8.5437 18 7 2.7513 0.0362 8.7617 19 14 2.9563 -2.4633 9.9390 20 1 4.2943 -3.0701 10.1559 21 1 2.5176 -1.7767 11.1806 22 1 1.9810 -3.5273 9.5901 23 6 3.4927 -2.9134 2.4372 24 6 1.9647 -2.8305 2.3916 25 8 1.5649 -2.0690 1.2487 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8932 -0.5138 -0.8900 30 1 1.6766 1.9563 -0.8899 31 1 1.6767 1.9562 0.8900 32 1 3.1300 1.4424 -0.0005 33 1 3.9349 0.3055 1.2948 34 1 3.9356 -1.1980 0.3400 35 1 4.4720 -2.1292 4.9904 36 1 5.5074 0.0149 6.6782 37 1 4.5824 1.1835 5.7051 38 1 4.2040 0.9646 7.4309 39 1 2.4784 0.3235 9.6471 40 1 3.8558 -3.4348 1.5515 41 1 3.8016 -3.4553 3.3311 42 1 1.5479 -3.8355 2.3247 43 1 1.5998 -2.3450 3.2968 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931158414.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:52 Heat of formation + Delta-G solvation = -112.234899 kcal Electronic energy + Delta-G solvation = -22122.868210 eV Core-core repulsion = 18973.986181 eV Total energy + Delta-G solvation = -3148.882029 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.28683 -37.98056 -35.25717 -34.83330 -33.47860 -32.29110 -29.92004 -28.85652 -27.07984 -25.34713 -25.06903 -23.49367 -22.17496 -20.25677 -20.04951 -19.03858 -16.85607 -16.31776 -16.01114 -15.64318 -15.29594 -14.65652 -14.47016 -14.05250 -13.89543 -13.41871 -13.35826 -13.13244 -12.54054 -12.43045 -12.17921 -12.08008 -11.90065 -11.60501 -11.36391 -11.09879 -11.07556 -11.01329 -10.95691 -10.74493 -10.69229 -10.36167 -10.33822 -10.24853 -9.97414 -9.28247 -9.07199 -8.74120 -8.56047 -7.90476 -6.13948 -4.23554 3.23902 3.29445 3.30182 3.36705 3.94102 4.08238 4.36557 4.73662 4.94098 4.98616 5.04928 5.16798 5.18361 5.25443 5.40282 5.54633 5.58789 5.71160 5.75091 5.81616 5.84535 5.89447 6.01147 6.03750 6.05429 6.11074 6.21009 6.25786 6.32537 6.45607 6.56075 6.80668 6.94881 7.13470 7.45166 7.50796 7.54435 7.67586 7.89567 8.13410 8.65451 8.76301 9.11830 9.44339 10.91918 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.026450 B = 0.004814 C = 0.004654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.343521 B = 5815.225273 C = 6014.657800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.084 4.084 3 C -0.146 4.146 4 C 0.084 3.916 5 H 0.089 0.911 6 C -0.125 4.125 7 C -0.116 4.116 8 H 0.093 0.907 9 C 0.504 3.496 10 O -0.551 6.551 11 N -0.708 5.708 12 C 0.265 3.735 13 H 0.047 0.953 14 C -0.146 4.146 15 C -0.534 4.534 16 H 0.060 0.940 17 C 0.067 3.933 18 N -0.883 5.883 19 Si 0.901 3.099 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.276 1.276 23 C -0.144 4.144 24 C 0.060 3.940 25 O -0.384 6.384 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.387 0.613 36 H 0.025 0.975 37 H 0.014 0.986 38 H 0.090 0.910 39 H 0.265 0.735 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.092 0.908 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.217 -3.399 -14.843 15.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.103 4.103 3 C -0.203 4.203 4 C 0.027 3.973 5 H 0.107 0.893 6 C -0.163 4.163 7 C -0.138 4.138 8 H 0.111 0.889 9 C 0.289 3.711 10 O -0.431 6.431 11 N -0.355 5.355 12 C 0.163 3.837 13 H 0.065 0.935 14 C -0.205 4.205 15 C -0.573 4.573 16 H 0.078 0.922 17 C -0.136 4.136 18 N -0.521 5.521 19 Si 0.729 3.271 20 H -0.202 1.202 21 H -0.211 1.211 22 H -0.202 1.202 23 C -0.182 4.182 24 C -0.017 4.017 25 O -0.303 6.303 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.220 0.780 36 H 0.044 0.956 37 H 0.033 0.967 38 H 0.108 0.892 39 H 0.075 0.925 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.110 0.890 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.567 -2.594 -14.838 15.074 hybrid contribution 0.585 -1.013 1.163 1.650 sum 1.152 -3.607 -13.675 14.189 Atomic orbital electron populations 1.21757 0.94918 1.02142 1.01204 1.21042 0.96343 0.95693 0.97172 1.21844 1.01223 0.95304 1.01959 1.22432 0.92496 0.82862 0.99534 0.89309 1.21989 0.97103 1.01094 0.96132 1.21457 1.01655 0.96058 0.94619 0.88888 1.20367 0.80439 0.85242 0.85088 1.90597 1.40364 1.24941 1.87170 1.46553 1.54356 1.27916 1.06684 1.18720 0.94563 0.90983 0.79418 0.93468 1.22073 0.98308 0.98626 1.01506 1.21172 1.47497 0.94637 0.93974 0.92199 1.24883 0.94735 0.95426 0.98604 1.69893 1.44611 1.14879 1.22696 0.86517 0.78497 0.81028 0.81102 1.20175 1.21114 1.20168 1.22148 0.97352 0.95483 1.03209 1.22545 0.93453 0.96223 0.89443 1.87831 1.74931 1.23904 1.43639 0.92721 0.93219 0.92056 0.91253 0.92715 0.91998 0.92380 0.90126 0.91379 0.78042 0.95561 0.96705 0.89192 0.92515 0.90562 0.90339 0.88996 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.05 37.16 0.34 -1.43 16 2 C -0.08 -1.08 2.72 -90.62 -0.25 -1.33 16 3 C -0.15 -1.74 8.84 37.16 0.33 -1.41 16 4 C 0.08 1.28 1.94 -26.68 -0.05 1.23 16 5 H 0.09 1.67 5.83 -51.93 -0.30 1.36 16 6 C -0.13 -1.75 4.13 -26.59 -0.11 -1.86 16 7 C -0.12 -1.69 3.04 -91.59 -0.28 -1.97 16 8 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 9 C 0.50 9.72 5.79 -10.98 -0.06 9.66 16 10 O -0.55 -12.56 13.53 5.56 0.08 -12.48 16 11 N -0.71 -14.40 4.95 -54.93 -0.27 -14.67 16 12 C 0.26 6.66 2.56 -69.08 -0.18 6.48 16 13 H 0.05 1.38 7.58 -51.92 -0.39 0.98 16 14 C -0.15 -3.64 9.26 37.16 0.34 -3.29 16 15 C -0.53 -14.00 8.73 -34.44 -0.30 -14.30 16 16 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 17 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 18 N -0.88 -24.79 11.32 55.43 0.63 -24.16 16 19 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 20 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 21 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 C -0.14 -1.84 5.56 -26.59 -0.15 -1.99 16 24 C 0.06 0.87 6.63 37.20 0.25 1.12 16 25 O -0.38 -5.95 9.74 -35.23 -0.34 -6.29 16 26 H 0.05 0.72 8.14 -51.92 -0.42 0.29 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.79 7.68 -51.93 -0.40 0.39 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.66 6.49 -51.93 -0.34 0.33 16 33 H 0.08 1.17 6.45 -51.93 -0.34 0.83 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.39 6.86 7.93 -40.82 -0.32 6.54 16 36 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 39 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.08 0.94 7.50 -51.93 -0.39 0.55 16 42 H 0.09 1.13 8.14 -51.92 -0.42 0.71 16 43 H 0.06 0.95 7.38 -51.93 -0.38 0.57 16 LS Contribution 332.45 15.07 5.01 5.01 Total: -1.00 -29.49 332.45 -7.51 -37.00 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -7.37 Total: 7.52 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -0.21 Total: -7.40 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 0.36 Total: -38.83 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.27 Total: -18.77 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.49 -7.51 -37.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931158414.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.237 kcal (2) G-P(sol) polarization free energy of solvation -29.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds