Wall clock time and date at job start Mon Mar 30 2020 00:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46908 * 109.46988 * 2 1 4 4 C 1.46904 * 110.99551 * 92.20890 * 3 2 1 5 5 C 1.52997 * 109.47316 * 292.28931 * 4 3 2 6 6 C 1.50697 * 115.55036 * 305.56600 * 5 4 3 7 7 H 1.08003 * 120.00145 * 144.71853 * 6 5 4 8 8 C 1.37881 * 120.00029 * 324.71541 * 6 5 4 9 9 N 1.31519 * 119.99722 * 357.14556 * 8 6 5 10 10 Si 1.86801 * 119.99838 * 177.14126 * 8 6 5 11 11 H 1.48489 * 109.47322 * 5.00516 * 10 8 6 12 12 H 1.48501 * 109.46838 * 125.01058 * 10 8 6 13 13 H 1.48502 * 109.46762 * 245.00237 * 10 8 6 14 14 C 1.52998 * 117.49960 * 159.89271 * 5 4 3 15 15 C 1.53006 * 117.49704 * 91.23359 * 5 4 3 16 16 C 1.46898 * 110.99985 * 216.16506 * 3 2 1 17 17 C 1.53002 * 109.46699 * 188.64059 * 16 3 2 18 18 C 1.53000 * 109.47040 * 308.63980 * 16 3 2 19 19 C 1.50701 * 109.47237 * 68.64154 * 16 3 2 20 20 O 1.20826 * 119.99672 * 144.31497 * 19 16 3 21 21 O 1.34228 * 119.99785 * 324.30785 * 19 16 3 22 22 C 1.45202 * 116.99857 * 180.02562 * 21 19 16 23 23 H 1.09001 * 109.46882 * 292.59740 * 1 2 3 24 24 H 1.08997 * 109.47172 * 52.59757 * 1 2 3 25 25 H 1.09003 * 109.47011 * 172.59659 * 1 2 3 26 26 H 1.08995 * 109.47581 * 120.00169 * 2 1 3 27 27 H 1.08999 * 109.46907 * 240.00623 * 2 1 3 28 28 H 1.09004 * 109.47004 * 52.28983 * 4 3 2 29 29 H 1.09002 * 109.46991 * 172.28767 * 4 3 2 30 30 H 0.96997 * 119.99201 * 185.19651 * 9 8 6 31 31 H 1.09001 * 117.49657 * 0.02562 * 14 5 4 32 32 H 1.08998 * 117.50421 * 145.02055 * 14 5 4 33 33 H 1.09001 * 117.49609 * 214.98008 * 15 5 4 34 34 H 1.08997 * 117.49484 * 359.97438 * 15 5 4 35 35 H 1.09004 * 109.47198 * 60.00419 * 17 16 3 36 36 H 1.09004 * 109.46617 * 179.97438 * 17 16 3 37 37 H 1.08991 * 109.47003 * 299.99736 * 17 16 3 38 38 H 1.08994 * 109.47556 * 60.00033 * 18 16 3 39 39 H 1.08995 * 109.47042 * 180.02562 * 18 16 3 40 40 H 1.09001 * 109.47039 * 299.99937 * 18 16 3 41 41 H 1.08997 * 109.46983 * 300.00204 * 22 21 19 42 42 H 1.08999 * 109.47009 * 59.99712 * 22 21 19 43 43 H 1.08999 * 109.46891 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 2.2449 1.8637 1.3705 5 6 0.9026 1.9903 2.0936 6 6 -0.1317 2.8391 1.4003 7 1 -1.1765 2.5718 1.4578 8 6 0.2559 3.9571 0.6924 9 7 1.5214 4.3145 0.6689 10 14 -1.0165 4.9640 -0.2331 11 1 -2.3723 4.4281 0.0486 12 1 -0.9426 6.3803 0.2072 13 1 -0.7457 4.8842 -1.6911 14 6 0.9234 2.0110 3.6233 15 6 0.4072 0.7757 2.8812 16 6 3.2390 1.5124 -0.8093 17 6 3.8376 2.9068 -0.6136 18 6 4.2546 0.4553 -0.3711 19 6 2.8999 1.3108 -2.2638 20 8 3.4780 1.9472 -3.1126 21 8 1.9558 0.4242 -2.6161 22 6 1.6817 0.2819 -4.0349 23 1 -0.3633 0.3949 0.9488 24 1 -0.3633 0.6242 -0.8163 25 1 -0.3633 -1.0191 -0.1324 26 1 1.8934 -0.5138 0.8899 27 1 1.8933 -0.5137 -0.8900 28 1 2.8792 1.1551 1.9032 29 1 2.7342 2.8372 1.3395 30 1 1.7837 5.1413 0.2348 31 1 1.8935 1.9348 4.1145 32 1 0.1889 2.6383 4.1283 33 1 -0.6669 0.5909 2.8982 34 1 1.0374 -0.1136 2.8838 35 1 4.0829 3.0526 0.4384 36 1 4.7426 3.0011 -1.2138 37 1 3.1141 3.6598 -0.9258 38 1 3.8282 -0.5381 -0.5104 39 1 5.1595 0.5500 -0.9713 40 1 4.4999 0.6011 0.6809 41 1 1.3504 1.2386 -4.4387 42 1 2.5884 -0.0354 -4.5500 43 1 0.9004 -0.4640 -4.1810 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933189705.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:42 Heat of formation + Delta-G solvation = -33.907475 kcal Electronic energy + Delta-G solvation = -23469.991236 eV Core-core repulsion = 20324.505739 eV Total energy + Delta-G solvation = -3145.485497 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.35962 -38.16104 -36.19402 -35.58584 -32.11392 -31.74751 -28.95140 -27.60868 -26.85411 -25.59160 -24.83042 -22.52518 -21.35569 -20.90498 -19.22551 -18.64657 -17.12468 -16.19998 -15.93467 -15.70854 -14.79765 -14.60338 -13.99326 -13.62927 -13.45212 -13.32408 -12.99598 -12.79166 -12.25051 -12.12305 -11.83676 -11.71800 -11.56214 -11.36479 -10.98478 -10.94206 -10.80655 -10.62253 -10.47404 -10.39992 -10.38282 -10.28736 -9.92925 -9.78971 -9.61478 -9.21075 -8.80712 -8.47191 -7.94148 -7.18820 -5.82957 -3.87087 2.69897 3.20686 3.36344 3.46104 3.47958 4.50420 4.65619 5.12313 5.20588 5.31637 5.37294 5.43743 5.48941 5.66120 5.72510 5.86937 5.96564 6.06611 6.16338 6.23286 6.26116 6.41314 6.46095 6.51258 6.57465 6.63714 6.67256 6.76315 6.79976 6.89096 6.97231 7.09060 7.19662 7.23284 7.36092 7.50947 7.69237 8.06629 8.13020 8.26658 8.32612 8.59686 9.05516 9.72423 11.15955 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.015845 B = 0.009717 C = 0.008234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.688336 B = 2880.724510 C = 3399.514651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.055 3.945 3 N -0.479 5.479 4 C 0.096 3.904 5 C 0.071 3.929 6 C -0.463 4.463 7 H 0.053 0.947 8 C 0.087 3.913 9 N -0.874 5.874 10 Si 0.886 3.114 11 H -0.277 1.277 12 H -0.289 1.289 13 H -0.285 1.285 14 C -0.211 4.211 15 C -0.215 4.215 16 C 0.124 3.876 17 C -0.123 4.123 18 C -0.178 4.178 19 C 0.487 3.513 20 O -0.520 6.520 21 O -0.340 6.340 22 C 0.030 3.970 23 H 0.086 0.914 24 H 0.054 0.946 25 H 0.025 0.975 26 H 0.024 0.976 27 H 0.064 0.936 28 H -0.014 1.014 29 H 0.133 0.867 30 H 0.255 0.745 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.045 0.955 37 H 0.089 0.911 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.073 0.927 41 H 0.058 0.942 42 H 0.054 0.946 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.476 -7.607 -3.341 9.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.072 4.072 3 N -0.203 5.203 4 C -0.031 4.031 5 C 0.070 3.930 6 C -0.500 4.500 7 H 0.071 0.929 8 C -0.115 4.115 9 N -0.513 5.513 10 Si 0.715 3.285 11 H -0.202 1.202 12 H -0.216 1.216 13 H -0.212 1.212 14 C -0.250 4.250 15 C -0.252 4.252 16 C 0.032 3.968 17 C -0.180 4.180 18 C -0.237 4.237 19 C 0.330 3.670 20 O -0.408 6.408 21 O -0.255 6.255 22 C -0.064 4.064 23 H 0.105 0.895 24 H 0.074 0.926 25 H 0.044 0.956 26 H 0.042 0.958 27 H 0.082 0.918 28 H 0.004 0.996 29 H 0.150 0.850 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.064 0.936 37 H 0.108 0.892 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.092 0.908 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.388 -7.015 -3.999 8.757 hybrid contribution -0.145 -0.054 -0.338 0.372 sum 3.243 -7.069 -4.337 8.905 Atomic orbital electron populations 1.21919 0.94903 0.98177 1.04965 1.22198 0.97248 0.89158 0.98621 1.61950 1.24707 1.19747 1.13924 1.22139 0.96051 1.00682 0.84182 1.18939 0.94206 0.92651 0.87155 1.20295 0.91430 1.08537 1.29745 0.92854 1.24688 0.94682 0.97200 0.94911 1.69759 1.14765 1.22255 1.44472 0.86653 0.82016 0.79643 0.80193 1.20165 1.21564 1.21165 1.23048 0.99902 1.01596 1.00460 1.22953 0.99021 0.92191 1.11071 1.20962 0.91515 0.97989 0.86360 1.21855 1.00087 0.93726 1.02326 1.22541 0.99211 0.99162 1.02830 1.23972 0.75337 0.75269 0.92422 1.90585 1.51388 1.46070 1.52746 1.86743 1.54449 1.57329 1.27011 1.23180 1.01055 1.02386 0.79801 0.89531 0.92648 0.95597 0.95794 0.91816 0.99630 0.84998 0.93430 0.92123 0.90556 0.90835 0.91876 0.90558 0.93579 0.89236 0.91957 0.92308 0.90770 0.92286 0.92729 0.88685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.24 37.16 0.34 -2.40 16 2 C 0.06 1.03 3.36 -3.82 -0.01 1.02 16 3 N -0.48 -9.85 3.77 -220.30 -0.83 -10.68 16 4 C 0.10 2.07 3.03 -3.82 -0.01 2.06 16 5 C 0.07 1.63 1.09 -155.66 -0.17 1.46 16 6 C -0.46 -11.77 7.40 -34.44 -0.25 -12.03 16 7 H 0.05 1.40 7.81 -52.48 -0.41 0.99 16 8 C 0.09 2.24 5.26 -17.82 -0.09 2.15 16 9 N -0.87 -22.19 8.51 55.43 0.47 -21.71 16 10 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 C -0.21 -4.58 9.96 -26.69 -0.27 -4.84 16 15 C -0.22 -4.44 7.10 -26.69 -0.19 -4.63 16 16 C 0.12 2.34 0.67 -132.75 -0.09 2.25 16 17 C -0.12 -2.39 6.87 37.16 0.26 -2.13 16 18 C -0.18 -2.80 7.90 37.16 0.29 -2.50 16 19 C 0.49 9.51 6.72 36.01 0.24 9.75 16 20 O -0.52 -10.95 15.84 -18.75 -0.30 -11.25 16 21 O -0.34 -6.03 7.45 -39.25 -0.29 -6.32 16 22 C 0.03 0.41 10.56 101.05 1.07 1.48 16 23 H 0.09 1.81 3.34 -51.93 -0.17 1.63 16 24 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 25 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.02 0.44 6.76 -51.93 -0.35 0.09 16 27 H 0.06 1.13 4.49 -51.93 -0.23 0.89 16 28 H -0.01 -0.29 6.90 -51.93 -0.36 -0.65 16 29 H 0.13 3.09 3.35 -51.93 -0.17 2.91 16 30 H 0.25 6.38 8.27 -40.82 -0.34 6.04 16 31 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 33 H 0.07 1.51 7.76 -51.93 -0.40 1.11 16 34 H 0.06 1.23 7.49 -51.93 -0.39 0.84 16 35 H 0.08 1.46 6.07 -51.93 -0.32 1.15 16 36 H 0.05 0.82 7.87 -51.93 -0.41 0.41 16 37 H 0.09 2.00 6.65 -51.93 -0.35 1.66 16 38 H 0.06 0.92 6.49 -51.93 -0.34 0.59 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.07 1.13 7.05 -51.93 -0.37 0.76 16 41 H 0.06 0.86 8.13 -51.93 -0.42 0.43 16 42 H 0.05 0.69 8.13 -51.93 -0.42 0.27 16 43 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 321.02 15.07 4.84 4.84 Total: -1.00 -26.94 321.02 -6.80 -33.74 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -6.78 Total: 3.77 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: 1.11 Total: -8.35 kcal Atomic # 7 Polarization: -32.04 SS G_CDS: -0.36 Total: -32.40 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.59 Total: -17.57 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -26.94 -6.80 -33.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933189705.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.170 kcal (2) G-P(sol) polarization free energy of solvation -26.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds