Wall clock time and date at job start Mon Mar 30 2020 00:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46908 * 109.46988 * 2 1 4 4 C 1.46904 * 110.99551 * 92.20890 * 3 2 1 5 5 C 1.52997 * 109.47316 * 292.28931 * 4 3 2 6 6 C 1.50697 * 115.55036 * 305.56600 * 5 4 3 7 7 H 1.08003 * 120.00145 * 144.71853 * 6 5 4 8 8 C 1.37881 * 120.00029 * 324.71541 * 6 5 4 9 9 N 1.31519 * 119.99722 * 357.14556 * 8 6 5 10 10 Si 1.86801 * 119.99838 * 177.14126 * 8 6 5 11 11 H 1.48489 * 109.47322 * 5.00516 * 10 8 6 12 12 H 1.48501 * 109.46838 * 125.01058 * 10 8 6 13 13 H 1.48502 * 109.46762 * 245.00237 * 10 8 6 14 14 C 1.52998 * 117.49960 * 159.89271 * 5 4 3 15 15 C 1.53006 * 117.49704 * 91.23359 * 5 4 3 16 16 C 1.46898 * 110.99985 * 216.16506 * 3 2 1 17 17 C 1.53002 * 109.46699 * 188.64059 * 16 3 2 18 18 C 1.53000 * 109.47040 * 308.63980 * 16 3 2 19 19 C 1.50701 * 109.47237 * 68.64154 * 16 3 2 20 20 O 1.20826 * 119.99672 * 144.31497 * 19 16 3 21 21 O 1.34228 * 119.99785 * 324.30785 * 19 16 3 22 22 C 1.45202 * 116.99857 * 180.02562 * 21 19 16 23 23 H 1.09001 * 109.46882 * 292.59740 * 1 2 3 24 24 H 1.08997 * 109.47172 * 52.59757 * 1 2 3 25 25 H 1.09003 * 109.47011 * 172.59659 * 1 2 3 26 26 H 1.08995 * 109.47581 * 120.00169 * 2 1 3 27 27 H 1.08999 * 109.46907 * 240.00623 * 2 1 3 28 28 H 1.09004 * 109.47004 * 52.28983 * 4 3 2 29 29 H 1.09002 * 109.46991 * 172.28767 * 4 3 2 30 30 H 0.96997 * 119.99201 * 185.19651 * 9 8 6 31 31 H 1.09001 * 117.49657 * 0.02562 * 14 5 4 32 32 H 1.08998 * 117.50421 * 145.02055 * 14 5 4 33 33 H 1.09001 * 117.49609 * 214.98008 * 15 5 4 34 34 H 1.08997 * 117.49484 * 359.97438 * 15 5 4 35 35 H 1.09004 * 109.47198 * 60.00419 * 17 16 3 36 36 H 1.09004 * 109.46617 * 179.97438 * 17 16 3 37 37 H 1.08991 * 109.47003 * 299.99736 * 17 16 3 38 38 H 1.08994 * 109.47556 * 60.00033 * 18 16 3 39 39 H 1.08995 * 109.47042 * 180.02562 * 18 16 3 40 40 H 1.09001 * 109.47039 * 299.99937 * 18 16 3 41 41 H 1.08997 * 109.46983 * 300.00204 * 22 21 19 42 42 H 1.08999 * 109.47009 * 59.99712 * 22 21 19 43 43 H 1.08999 * 109.46891 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 2.2449 1.8637 1.3705 5 6 0.9026 1.9903 2.0936 6 6 -0.1317 2.8391 1.4003 7 1 -1.1765 2.5718 1.4578 8 6 0.2559 3.9571 0.6924 9 7 1.5214 4.3145 0.6689 10 14 -1.0165 4.9640 -0.2331 11 1 -2.3723 4.4281 0.0486 12 1 -0.9426 6.3803 0.2072 13 1 -0.7457 4.8842 -1.6911 14 6 0.9234 2.0110 3.6233 15 6 0.4072 0.7757 2.8812 16 6 3.2390 1.5124 -0.8093 17 6 3.8376 2.9068 -0.6136 18 6 4.2546 0.4553 -0.3711 19 6 2.8999 1.3108 -2.2638 20 8 3.4780 1.9472 -3.1126 21 8 1.9558 0.4242 -2.6161 22 6 1.6817 0.2819 -4.0349 23 1 -0.3633 0.3949 0.9488 24 1 -0.3633 0.6242 -0.8163 25 1 -0.3633 -1.0191 -0.1324 26 1 1.8934 -0.5138 0.8899 27 1 1.8933 -0.5137 -0.8900 28 1 2.8792 1.1551 1.9032 29 1 2.7342 2.8372 1.3395 30 1 1.7837 5.1413 0.2348 31 1 1.8935 1.9348 4.1145 32 1 0.1889 2.6383 4.1283 33 1 -0.6669 0.5909 2.8982 34 1 1.0374 -0.1136 2.8838 35 1 4.0829 3.0526 0.4384 36 1 4.7426 3.0011 -1.2138 37 1 3.1141 3.6598 -0.9258 38 1 3.8282 -0.5381 -0.5104 39 1 5.1595 0.5500 -0.9713 40 1 4.4999 0.6011 0.6809 41 1 1.3504 1.2386 -4.4387 42 1 2.5884 -0.0354 -4.5500 43 1 0.9004 -0.4640 -4.1810 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933189705.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:41 Heat of formation + Delta-G solvation = -47.927358 kcal Electronic energy + Delta-G solvation = -23470.599184 eV Core-core repulsion = 20324.505739 eV Total energy + Delta-G solvation = -3146.093444 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.82213 -39.73180 -37.65469 -37.19742 -33.98422 -33.29943 -30.47839 -28.86637 -28.24184 -27.45051 -26.39375 -24.02711 -22.98991 -22.45392 -20.85754 -20.27534 -18.58812 -17.91363 -17.36509 -17.21361 -16.55891 -16.22863 -15.65126 -15.10932 -15.01316 -14.79751 -14.43864 -14.30853 -13.69290 -13.51535 -13.39456 -13.13637 -13.06290 -12.92541 -12.82122 -12.70567 -12.44151 -12.24958 -12.10549 -12.07746 -11.86321 -11.72971 -11.54762 -11.41039 -11.23328 -10.90649 -10.65092 -10.26494 -9.73397 -8.70525 -7.76511 -5.83554 1.20817 1.42898 1.50402 1.54589 1.87873 2.55766 3.10090 3.38218 3.73880 3.86799 3.97849 4.14981 4.31811 4.33315 4.48323 4.51371 4.59064 4.64849 4.71244 4.72888 4.86395 4.88500 4.91505 4.98292 4.99242 5.06910 5.11650 5.19847 5.26745 5.31530 5.42662 5.47787 5.58271 5.59830 5.67001 5.81669 5.98209 6.24647 6.55954 6.57446 6.82131 6.85411 7.12354 7.74896 9.18015 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.015845 B = 0.009717 C = 0.008234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.688336 B = 2880.724510 C = 3399.514651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.059 3.941 3 N -0.499 5.499 4 C 0.106 3.894 5 C 0.048 3.952 6 C -0.469 4.469 7 H 0.036 0.964 8 C 0.057 3.943 9 N -0.876 5.876 10 Si 0.922 3.078 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.297 1.297 14 C -0.213 4.213 15 C -0.190 4.190 16 C 0.118 3.882 17 C -0.113 4.113 18 C -0.169 4.169 19 C 0.485 3.515 20 O -0.544 6.544 21 O -0.346 6.346 22 C 0.023 3.977 23 H 0.068 0.932 24 H 0.030 0.970 25 H 0.052 0.948 26 H 0.033 0.967 27 H 0.077 0.923 28 H -0.002 1.002 29 H 0.113 0.887 30 H 0.251 0.749 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.047 0.953 42 H 0.067 0.933 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.971 -9.453 -3.307 10.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.068 4.068 3 N -0.223 5.223 4 C -0.020 4.020 5 C 0.047 3.953 6 C -0.506 4.506 7 H 0.054 0.946 8 C -0.145 4.145 9 N -0.515 5.515 10 Si 0.752 3.248 11 H -0.203 1.203 12 H -0.215 1.215 13 H -0.224 1.224 14 C -0.252 4.252 15 C -0.227 4.227 16 C 0.026 3.974 17 C -0.170 4.170 18 C -0.228 4.228 19 C 0.329 3.671 20 O -0.433 6.433 21 O -0.261 6.261 22 C -0.070 4.070 23 H 0.087 0.913 24 H 0.049 0.951 25 H 0.071 0.929 26 H 0.051 0.949 27 H 0.095 0.905 28 H 0.016 0.984 29 H 0.130 0.870 30 H 0.061 0.939 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.098 0.902 41 H 0.065 0.935 42 H 0.086 0.914 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.870 -8.871 -3.958 10.457 hybrid contribution -0.359 0.502 -0.392 0.731 sum 3.511 -8.369 -4.350 10.065 Atomic orbital electron populations 1.21838 0.95492 0.99125 1.02924 1.22188 0.96629 0.88374 0.99587 1.61820 1.26018 1.21045 1.13417 1.21878 0.95161 1.00079 0.84889 1.18989 0.94564 0.94048 0.87705 1.20353 0.91251 1.08980 1.30057 0.94590 1.25057 0.95612 0.98031 0.95751 1.69858 1.14900 1.22075 1.44625 0.86095 0.80980 0.78988 0.78747 1.20312 1.21475 1.22422 1.23052 1.00451 1.02155 0.99549 1.22881 0.99158 0.92039 1.08667 1.21014 0.91843 0.98495 0.86016 1.21704 0.99537 0.93510 1.02253 1.22455 0.98734 0.98384 1.03238 1.24107 0.75313 0.75184 0.92525 1.90568 1.52364 1.47003 1.53381 1.86696 1.53579 1.56549 1.29303 1.23496 1.02798 1.02878 0.77802 0.91276 0.95063 0.92942 0.94920 0.90537 0.98441 0.86968 0.93883 0.90750 0.91558 0.91065 0.90012 0.90638 0.92534 0.92591 0.90800 0.90975 0.90237 0.93455 0.91440 0.85305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.00 9.24 71.98 0.67 -4.34 16 2 C 0.06 2.08 3.36 86.30 0.29 2.37 16 3 N -0.50 -19.85 3.77 -850.90 -3.21 -23.06 16 4 C 0.11 4.48 3.03 86.30 0.26 4.74 16 5 C 0.05 2.14 1.09 -52.93 -0.06 2.08 16 6 C -0.47 -23.88 7.40 25.60 0.19 -23.69 16 7 H 0.04 1.91 7.81 -2.91 -0.02 1.89 16 8 C 0.06 2.92 5.26 84.66 0.45 3.37 16 9 N -0.88 -44.91 8.51 21.45 0.18 -44.72 16 10 Si 0.92 43.61 29.54 68.60 2.03 45.64 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 13 H -0.30 -14.52 7.11 99.48 0.71 -13.82 16 14 C -0.21 -8.93 9.96 30.62 0.30 -8.63 16 15 C -0.19 -7.46 7.10 30.62 0.22 -7.24 16 16 C 0.12 4.30 0.67 2.78 0.00 4.30 16 17 C -0.11 -4.35 6.87 71.98 0.49 -3.86 16 18 C -0.17 -4.85 7.90 71.98 0.57 -4.28 16 19 C 0.48 18.36 6.72 71.24 0.48 18.84 16 20 O -0.54 -22.53 15.84 21.96 0.35 -22.18 16 21 O -0.35 -11.66 7.45 -51.40 -0.38 -12.05 16 22 C 0.02 0.60 10.56 113.37 1.20 1.80 16 23 H 0.07 2.78 3.34 -2.39 -0.01 2.77 16 24 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.03 1.09 6.76 -2.39 -0.02 1.07 16 27 H 0.08 2.48 4.49 -2.39 -0.01 2.47 16 28 H 0.00 -0.09 6.90 -2.38 -0.02 -0.10 16 29 H 0.11 5.20 3.35 -2.39 -0.01 5.19 16 30 H 0.25 12.77 8.27 -92.71 -0.77 12.00 16 31 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 32 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 33 H 0.07 2.82 7.76 -2.39 -0.02 2.80 16 34 H 0.08 2.90 7.49 -2.39 -0.02 2.88 16 35 H 0.07 2.88 6.07 -2.38 -0.01 2.86 16 36 H 0.06 1.99 7.87 -2.38 -0.02 1.98 16 37 H 0.06 2.53 6.65 -2.39 -0.02 2.52 16 38 H 0.07 1.94 6.49 -2.39 -0.02 1.92 16 39 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.08 2.19 7.05 -2.39 -0.02 2.17 16 41 H 0.05 1.33 8.13 -2.39 -0.02 1.31 16 42 H 0.07 1.56 8.13 -2.39 -0.02 1.55 16 43 H 0.13 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -56.86 321.02 5.02 -51.84 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: 1.00 Total: 19.07 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: 5.06 Total: -14.54 kcal Atomic # 7 Polarization: -64.76 SS G_CDS: -3.02 Total: -67.78 kcal Atomic # 8 Polarization: -34.19 SS G_CDS: -0.04 Total: -34.23 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -56.86 5.02 -51.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933189705.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.908 kcal (2) G-P(sol) polarization free energy of solvation -56.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds