Wall clock time and date at job start Mon Mar 30 2020 01:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45200 * 109.46908 * 2 1 4 4 C 1.34231 * 116.99680 * 179.97438 * 3 2 1 5 5 O 1.20827 * 120.00288 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99957 * 179.97438 * 4 3 2 7 7 H 1.08996 * 109.49898 * 299.93467 * 6 4 3 8 8 C 1.53043 * 109.49767 * 179.83878 * 6 4 3 9 9 H 1.08997 * 109.45949 * 58.66365 * 8 6 4 10 10 C 1.53003 * 109.45865 * 298.70469 * 8 6 4 11 11 C 1.53039 * 109.53635 * 178.68255 * 8 6 4 12 12 C 1.53189 * 109.31496 * 61.36711 * 11 8 6 13 13 H 1.09003 * 109.58643 * 65.14809 * 12 11 8 14 14 C 1.52993 * 109.58908 * 185.43515 * 12 11 8 15 15 N 1.46929 * 108.77224 * 305.36486 * 12 11 8 16 16 C 1.36946 * 120.62879 * 233.62794 * 15 12 11 17 17 H 1.07998 * 119.99481 * 127.55823 * 16 15 12 18 18 C 1.38810 * 119.99611 * 307.56645 * 16 15 12 19 19 N 1.31615 * 120.00580 * 337.67852 * 18 16 15 20 20 Si 1.86802 * 119.99622 * 157.69136 * 18 16 15 21 21 H 1.48495 * 109.47484 * 89.99421 * 20 18 16 22 22 H 1.48500 * 109.47148 * 209.99766 * 20 18 16 23 23 H 1.48503 * 109.46946 * 329.99354 * 20 18 16 24 24 C 1.46920 * 118.74086 * 53.60659 * 15 12 11 25 25 H 1.09000 * 109.58759 * 66.18349 * 24 15 12 26 26 C 1.53007 * 109.58818 * 186.60462 * 24 15 12 27 27 H 1.08999 * 109.46572 * 60.00175 * 1 2 3 28 28 H 1.08997 * 109.46880 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46886 * 300.00498 * 1 2 3 30 30 H 1.08992 * 109.47418 * 239.99881 * 2 1 3 31 31 H 1.08998 * 109.47070 * 119.99660 * 2 1 3 32 32 H 1.08992 * 109.47372 * 60.00183 * 10 8 6 33 33 H 1.09001 * 109.46529 * 180.02562 * 10 8 6 34 34 H 1.08999 * 109.46856 * 299.99702 * 10 8 6 35 35 H 1.09006 * 109.49609 * 181.31355 * 11 8 6 36 36 H 1.08998 * 109.49979 * 301.37976 * 11 8 6 37 37 H 1.08998 * 109.47439 * 68.28895 * 14 12 11 38 38 H 1.09007 * 109.47233 * 188.29407 * 14 12 11 39 39 H 1.09000 * 109.47111 * 308.28976 * 14 12 11 40 40 H 0.97000 * 120.00295 * 175.08564 * 19 18 16 41 41 H 1.08995 * 109.46894 * 179.28872 * 26 24 15 42 42 H 1.09000 * 109.46661 * 299.29170 * 26 24 15 43 43 H 1.09002 * 109.46854 * 59.28915 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9208 2.9374 0.0000 7 1 3.5865 3.4690 -0.8909 8 6 5.4491 2.8580 0.0048 9 1 5.7867 2.3040 -0.8710 10 6 5.9183 2.1417 1.2728 11 6 6.0351 4.2714 -0.0289 12 6 5.5868 5.0357 1.2207 13 1 6.0152 4.5691 2.1078 14 6 6.0555 6.4892 1.1286 15 7 4.1203 4.9922 1.3008 16 6 3.3936 6.1467 1.4202 17 1 2.5830 6.3478 0.7354 18 6 3.6989 7.0585 2.4213 19 7 4.3483 6.6634 3.4958 20 14 3.1876 8.8464 2.2438 21 1 1.8353 9.0350 2.8275 22 1 4.1600 9.7126 2.9576 23 1 3.1613 9.2132 0.8050 24 6 3.4484 3.6866 1.2499 25 1 3.7024 3.1100 2.1393 26 6 1.9336 3.8916 1.1832 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 5.5020 1.1347 1.2964 33 1 7.0068 2.0855 1.2766 34 1 5.5803 2.6952 2.1489 35 1 7.1235 4.2136 -0.0490 36 1 5.6819 4.7905 -0.9198 37 1 5.5106 6.9970 0.3328 38 1 5.8667 6.9926 2.0769 39 1 7.1232 6.5135 0.9107 40 1 4.6243 7.3124 4.1618 41 1 1.4378 2.9222 1.1328 42 1 1.5997 4.4247 2.0733 43 1 1.6845 4.4738 0.2960 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934161542.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:15 Heat of formation + Delta-G solvation = -74.196606 kcal Electronic energy + Delta-G solvation = -22862.396087 eV Core-core repulsion = 19715.163523 eV Total energy + Delta-G solvation = -3147.232564 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.53076 -38.27948 -36.34142 -33.89619 -32.92699 -31.49991 -30.88586 -27.85196 -26.65344 -25.83939 -24.61729 -23.31871 -21.45216 -20.65100 -19.96512 -18.29263 -17.29596 -16.47788 -15.93563 -15.91587 -14.69803 -14.66380 -14.05153 -13.80113 -13.77319 -13.36066 -13.08020 -12.93615 -12.67391 -12.15743 -11.78497 -11.71280 -11.61638 -11.41816 -11.21954 -11.12976 -11.05388 -10.75263 -10.57764 -10.48524 -10.32950 -10.25931 -10.10714 -9.91119 -9.88725 -9.63579 -9.49932 -9.28860 -8.04885 -6.41172 -5.72909 -3.52341 2.59576 2.99837 3.32637 3.41879 3.45374 4.44884 4.95526 4.95993 5.07897 5.21330 5.27164 5.30849 5.43787 5.46080 5.65730 5.78059 5.79873 5.91031 5.98511 6.06021 6.12753 6.28191 6.37632 6.46445 6.48699 6.52065 6.62969 6.71054 6.72861 6.84082 6.87293 6.91524 6.96197 7.10965 7.15703 7.29955 7.58180 7.72319 7.87509 8.16078 8.60922 9.20669 9.74082 10.50391 11.16888 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.022292 B = 0.006779 C = 0.005573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.778480 B = 4129.464493 C = 5023.206873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.348 6.348 4 C 0.472 3.528 5 O -0.516 6.516 6 C -0.092 4.092 7 H 0.101 0.899 8 C -0.063 4.063 9 H 0.059 0.941 10 C -0.159 4.159 11 C -0.130 4.130 12 C 0.191 3.809 13 H 0.033 0.967 14 C -0.145 4.145 15 N -0.571 5.571 16 C -0.263 4.263 17 H 0.054 0.946 18 C 0.038 3.962 19 N -0.871 5.871 20 Si 0.879 3.121 21 H -0.284 1.284 22 H -0.288 1.288 23 H -0.275 1.275 24 C 0.184 3.816 25 H 0.031 0.969 26 C -0.139 4.139 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.046 0.954 34 H 0.065 0.935 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.050 0.950 38 H 0.084 0.916 39 H 0.021 0.979 40 H 0.254 0.746 41 H 0.055 0.945 42 H 0.063 0.937 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.671 -8.900 -6.171 11.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.018 4.018 3 O -0.265 6.265 4 C 0.316 3.684 5 O -0.405 6.405 6 C -0.113 4.113 7 H 0.119 0.881 8 C -0.082 4.082 9 H 0.077 0.923 10 C -0.216 4.216 11 C -0.170 4.170 12 C 0.085 3.915 13 H 0.051 0.949 14 C -0.203 4.203 15 N -0.295 5.295 16 C -0.392 4.392 17 H 0.071 0.929 18 C -0.164 4.164 19 N -0.511 5.511 20 Si 0.707 3.293 21 H -0.211 1.211 22 H -0.214 1.214 23 H -0.200 1.200 24 C 0.077 3.923 25 H 0.049 0.951 26 C -0.196 4.196 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.103 0.897 39 H 0.040 0.960 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.082 0.918 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.481 -9.121 -5.955 11.172 hybrid contribution -0.057 0.756 -0.083 0.763 sum -2.538 -8.364 -6.038 10.624 Atomic orbital electron populations 1.21786 0.92967 1.02463 1.03625 1.22943 0.95227 0.81513 1.02070 1.86677 1.25087 1.30892 1.83868 1.24172 0.80044 0.93085 0.71069 1.90549 1.60195 1.43637 1.46112 1.21918 0.96302 0.88510 1.04611 0.88070 1.20811 0.91809 0.96922 0.98638 0.92301 1.22101 1.00277 1.01143 0.98084 1.22235 0.98718 0.94649 1.01368 1.20301 0.84528 0.94096 0.92526 0.94940 1.22035 0.96193 0.97600 1.04459 1.43972 1.00317 1.00049 1.85176 1.18653 1.15700 0.95989 1.08873 0.92851 1.25438 0.98267 0.99182 0.93516 1.70207 1.40681 1.32896 1.07287 0.86740 0.78223 0.86247 0.78132 1.21056 1.21390 1.19986 1.20364 0.92762 0.88369 0.90816 0.95133 1.21918 0.94855 1.00387 1.02475 0.91590 0.90751 0.91335 0.91797 0.91579 0.91585 0.93535 0.91649 0.92787 0.92410 0.93077 0.89707 0.96042 0.93626 0.92657 0.91808 0.93035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 10.29 37.16 0.38 -1.06 16 2 C 0.06 0.70 6.19 37.16 0.23 0.93 16 3 O -0.35 -5.49 7.41 -39.26 -0.29 -5.78 16 4 C 0.47 8.29 6.95 36.01 0.25 8.54 16 5 O -0.52 -9.69 13.50 -18.75 -0.25 -9.94 16 6 C -0.09 -1.70 2.06 -91.65 -0.19 -1.89 16 7 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 8 C -0.06 -1.14 2.35 -90.58 -0.21 -1.35 16 9 H 0.06 1.01 8.07 -51.93 -0.42 0.59 16 10 C -0.16 -2.89 8.13 37.16 0.30 -2.58 16 11 C -0.13 -2.43 4.91 -26.61 -0.13 -2.56 16 12 C 0.19 4.23 2.60 -67.60 -0.18 4.06 16 13 H 0.03 0.79 6.69 -51.93 -0.35 0.44 16 14 C -0.15 -3.23 7.86 37.15 0.29 -2.94 16 15 N -0.57 -13.45 2.78 -157.29 -0.44 -13.89 16 16 C -0.26 -6.71 6.69 -15.06 -0.10 -6.81 16 17 H 0.05 1.39 7.12 -52.49 -0.37 1.01 16 18 C 0.04 1.00 3.20 -17.43 -0.06 0.94 16 19 N -0.87 -23.98 11.80 55.49 0.65 -23.33 16 20 Si 0.88 20.48 29.61 -169.99 -5.03 15.44 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 24 C 0.18 3.86 2.48 -67.60 -0.17 3.69 16 25 H 0.03 0.70 6.69 -51.93 -0.35 0.36 16 26 C -0.14 -2.75 7.84 37.16 0.29 -2.46 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 31 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 32 H 0.07 1.22 5.64 -51.93 -0.29 0.93 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.06 1.31 4.98 -51.93 -0.26 1.05 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.05 1.15 7.56 -51.93 -0.39 0.76 16 38 H 0.08 2.10 4.99 -51.93 -0.26 1.85 16 39 H 0.02 0.41 8.13 -51.93 -0.42 -0.01 16 40 H 0.25 6.78 8.32 -40.82 -0.34 6.44 16 41 H 0.05 0.97 5.50 -51.93 -0.29 0.69 16 42 H 0.06 1.38 7.71 -51.93 -0.40 0.98 16 43 H 0.05 1.01 7.47 -51.93 -0.39 0.62 16 LS Contribution 320.08 15.07 4.82 4.82 Total: -1.00 -27.87 320.08 -6.95 -34.82 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -7.13 Total: 1.34 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: 0.72 Total: -3.48 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: 0.22 Total: -37.22 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -0.54 Total: -15.72 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.03 Total: 15.44 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.87 -6.95 -34.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934161542.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.379 kcal (2) G-P(sol) polarization free energy of solvation -27.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds