Wall clock time and date at job start Mon Mar 30 2020 01:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45200 * 109.46908 * 2 1 4 4 C 1.34231 * 116.99680 * 179.97438 * 3 2 1 5 5 O 1.20827 * 120.00288 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99957 * 179.97438 * 4 3 2 7 7 H 1.08996 * 109.49898 * 299.93467 * 6 4 3 8 8 C 1.53043 * 109.49767 * 179.83878 * 6 4 3 9 9 H 1.08997 * 109.45949 * 58.66365 * 8 6 4 10 10 C 1.53003 * 109.45865 * 298.70469 * 8 6 4 11 11 C 1.53039 * 109.53635 * 178.68255 * 8 6 4 12 12 C 1.53189 * 109.31496 * 61.36711 * 11 8 6 13 13 H 1.09003 * 109.58643 * 65.14809 * 12 11 8 14 14 C 1.52993 * 109.58908 * 185.43515 * 12 11 8 15 15 N 1.46929 * 108.77224 * 305.36486 * 12 11 8 16 16 C 1.36946 * 120.62879 * 233.62794 * 15 12 11 17 17 H 1.07998 * 119.99481 * 127.55823 * 16 15 12 18 18 C 1.38810 * 119.99611 * 307.56645 * 16 15 12 19 19 N 1.31615 * 120.00580 * 337.67852 * 18 16 15 20 20 Si 1.86802 * 119.99622 * 157.69136 * 18 16 15 21 21 H 1.48495 * 109.47484 * 89.99421 * 20 18 16 22 22 H 1.48500 * 109.47148 * 209.99766 * 20 18 16 23 23 H 1.48503 * 109.46946 * 329.99354 * 20 18 16 24 24 C 1.46920 * 118.74086 * 53.60659 * 15 12 11 25 25 H 1.09000 * 109.58759 * 66.18349 * 24 15 12 26 26 C 1.53007 * 109.58818 * 186.60462 * 24 15 12 27 27 H 1.08999 * 109.46572 * 60.00175 * 1 2 3 28 28 H 1.08997 * 109.46880 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46886 * 300.00498 * 1 2 3 30 30 H 1.08992 * 109.47418 * 239.99881 * 2 1 3 31 31 H 1.08998 * 109.47070 * 119.99660 * 2 1 3 32 32 H 1.08992 * 109.47372 * 60.00183 * 10 8 6 33 33 H 1.09001 * 109.46529 * 180.02562 * 10 8 6 34 34 H 1.08999 * 109.46856 * 299.99702 * 10 8 6 35 35 H 1.09006 * 109.49609 * 181.31355 * 11 8 6 36 36 H 1.08998 * 109.49979 * 301.37976 * 11 8 6 37 37 H 1.08998 * 109.47439 * 68.28895 * 14 12 11 38 38 H 1.09007 * 109.47233 * 188.29407 * 14 12 11 39 39 H 1.09000 * 109.47111 * 308.28976 * 14 12 11 40 40 H 0.97000 * 120.00295 * 175.08564 * 19 18 16 41 41 H 1.08995 * 109.46894 * 179.28872 * 26 24 15 42 42 H 1.09000 * 109.46661 * 299.29170 * 26 24 15 43 43 H 1.09002 * 109.46854 * 59.28915 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9208 2.9374 0.0000 7 1 3.5865 3.4690 -0.8909 8 6 5.4491 2.8580 0.0048 9 1 5.7867 2.3040 -0.8710 10 6 5.9183 2.1417 1.2728 11 6 6.0351 4.2714 -0.0289 12 6 5.5868 5.0357 1.2207 13 1 6.0152 4.5691 2.1078 14 6 6.0555 6.4892 1.1286 15 7 4.1203 4.9922 1.3008 16 6 3.3936 6.1467 1.4202 17 1 2.5830 6.3478 0.7354 18 6 3.6989 7.0585 2.4213 19 7 4.3483 6.6634 3.4958 20 14 3.1876 8.8464 2.2438 21 1 1.8353 9.0350 2.8275 22 1 4.1600 9.7126 2.9576 23 1 3.1613 9.2132 0.8050 24 6 3.4484 3.6866 1.2499 25 1 3.7024 3.1100 2.1393 26 6 1.9336 3.8916 1.1832 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 5.5020 1.1347 1.2964 33 1 7.0068 2.0855 1.2766 34 1 5.5803 2.6952 2.1489 35 1 7.1235 4.2136 -0.0490 36 1 5.6819 4.7905 -0.9198 37 1 5.5106 6.9970 0.3328 38 1 5.8667 6.9926 2.0769 39 1 7.1232 6.5135 0.9107 40 1 4.6243 7.3124 4.1618 41 1 1.4378 2.9222 1.1328 42 1 1.5997 4.4247 2.0733 43 1 1.6845 4.4738 0.2960 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934161542.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:15 Heat of formation + Delta-G solvation = -88.230758 kcal Electronic energy + Delta-G solvation = -22863.004654 eV Core-core repulsion = 19715.163523 eV Total energy + Delta-G solvation = -3147.841131 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.93166 -39.82059 -37.69811 -35.64193 -34.52857 -32.79168 -32.44425 -29.53492 -28.22061 -27.43829 -26.48047 -24.40740 -22.80896 -22.36341 -21.56394 -19.88903 -18.65105 -17.86578 -17.70849 -17.33592 -16.52033 -16.17193 -15.63969 -15.32109 -15.19214 -15.01077 -14.63536 -14.29853 -13.74440 -13.48260 -13.36332 -13.29484 -12.99324 -12.83987 -12.78685 -12.72577 -12.54535 -12.42013 -12.34932 -12.18686 -11.89735 -11.79901 -11.65580 -11.51910 -11.36091 -11.31111 -11.01841 -10.95778 -10.00780 -8.37136 -7.66793 -5.53228 1.20027 1.45768 1.51310 1.58589 1.76496 2.53613 3.27422 3.56498 3.74618 3.91741 3.93009 4.06434 4.14269 4.20628 4.34339 4.39993 4.47701 4.60982 4.73170 4.74663 4.84508 4.89722 4.90441 4.93298 4.97401 5.06611 5.10447 5.16998 5.23634 5.26080 5.28847 5.32966 5.44493 5.47381 5.61406 5.62384 5.78067 5.84347 5.94816 6.61146 6.81363 7.28714 7.84563 8.56879 9.17273 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.022292 B = 0.006779 C = 0.005573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.778480 B = 4129.464493 C = 5023.206873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.048 3.952 3 O -0.354 6.354 4 C 0.478 3.522 5 O -0.528 6.528 6 C -0.086 4.086 7 H 0.109 0.891 8 C -0.062 4.062 9 H 0.077 0.923 10 C -0.150 4.150 11 C -0.119 4.119 12 C 0.188 3.812 13 H 0.006 0.994 14 C -0.139 4.139 15 N -0.585 5.585 16 C -0.261 4.261 17 H 0.050 0.950 18 C 0.001 3.999 19 N -0.905 5.905 20 Si 0.931 3.069 21 H -0.286 1.286 22 H -0.292 1.292 23 H -0.267 1.267 24 C 0.183 3.817 25 H 0.007 0.993 26 C -0.127 4.127 27 H 0.069 0.931 28 H 0.101 0.899 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.037 0.963 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.044 0.956 38 H 0.057 0.943 39 H 0.047 0.953 40 H 0.250 0.750 41 H 0.076 0.924 42 H 0.036 0.964 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.961 -9.719 -7.955 12.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.025 4.025 3 O -0.271 6.271 4 C 0.322 3.678 5 O -0.418 6.418 6 C -0.107 4.107 7 H 0.127 0.873 8 C -0.080 4.080 9 H 0.096 0.904 10 C -0.207 4.207 11 C -0.158 4.158 12 C 0.083 3.917 13 H 0.024 0.976 14 C -0.197 4.197 15 N -0.309 5.309 16 C -0.391 4.391 17 H 0.067 0.933 18 C -0.198 4.198 19 N -0.546 5.546 20 Si 0.758 3.242 21 H -0.212 1.212 22 H -0.218 1.218 23 H -0.192 1.192 24 C 0.076 3.924 25 H 0.024 0.976 26 C -0.184 4.184 27 H 0.088 0.912 28 H 0.120 0.880 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.056 0.944 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.095 0.905 42 H 0.056 0.944 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.790 -9.949 -7.759 12.921 hybrid contribution -0.011 0.920 0.493 1.044 sum -2.802 -9.028 -7.266 11.923 Atomic orbital electron populations 1.21817 0.90578 1.04265 1.03587 1.23294 0.97081 0.79708 1.02403 1.86629 1.23894 1.33201 1.83338 1.23851 0.80678 0.92403 0.70878 1.90543 1.60665 1.43833 1.46786 1.21725 0.96830 0.89008 1.03128 0.87336 1.20828 0.91448 0.96658 0.99096 0.90435 1.21991 1.01229 1.00357 0.97107 1.22084 1.00034 0.94394 0.99293 1.20293 0.83754 0.94353 0.93290 0.97624 1.21928 0.97829 0.97340 1.02603 1.44190 1.01002 1.00414 1.85300 1.18797 1.15464 0.96693 1.08182 0.93253 1.25949 0.98659 1.01977 0.93238 1.70304 1.42537 1.33614 1.08164 0.85914 0.77453 0.82629 0.78181 1.21233 1.21800 1.19208 1.20343 0.93305 0.87385 0.91345 0.97587 1.21800 0.94265 1.01205 1.01132 0.91194 0.88035 0.91770 0.90992 0.91777 0.91981 0.91933 0.94363 0.90643 0.91850 0.93686 0.92461 0.93420 0.94100 0.90543 0.94442 0.92864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 10.29 71.98 0.74 -1.65 16 2 C 0.05 1.10 6.19 71.98 0.45 1.55 16 3 O -0.35 -10.53 7.41 -51.43 -0.38 -10.91 16 4 C 0.48 16.02 6.95 71.24 0.49 16.52 16 5 O -0.53 -18.91 13.50 21.96 0.30 -18.61 16 6 C -0.09 -3.05 2.06 -11.46 -0.02 -3.07 16 7 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 8 C -0.06 -2.10 2.35 -10.77 -0.03 -2.13 16 9 H 0.08 2.42 8.07 -2.39 -0.02 2.40 16 10 C -0.15 -5.30 8.13 71.98 0.59 -4.71 16 11 C -0.12 -4.20 4.91 30.67 0.15 -4.05 16 12 C 0.19 8.30 2.60 44.97 0.12 8.42 16 13 H 0.01 0.30 6.69 -2.39 -0.02 0.28 16 14 C -0.14 -6.14 7.86 71.98 0.57 -5.58 16 15 N -0.58 -27.69 2.78 -651.56 -1.81 -29.50 16 16 C -0.26 -13.42 6.69 84.03 0.56 -12.86 16 17 H 0.05 2.56 7.12 -2.91 -0.02 2.54 16 18 C 0.00 0.06 3.20 84.86 0.27 0.33 16 19 N -0.90 -51.06 11.80 21.65 0.26 -50.81 16 20 Si 0.93 42.42 29.61 68.60 2.03 44.45 16 21 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 22 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 24 C 0.18 7.68 2.48 44.98 0.11 7.79 16 25 H 0.01 0.30 6.69 -2.39 -0.02 0.29 16 26 C -0.13 -4.99 7.84 71.98 0.56 -4.42 16 27 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.07 1.54 8.13 -2.39 -0.02 1.52 16 31 H 0.06 1.49 8.13 -2.39 -0.02 1.47 16 32 H 0.06 2.24 5.64 -2.39 -0.01 2.22 16 33 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.04 1.55 4.98 -2.39 -0.01 1.54 16 35 H 0.08 2.34 8.14 -2.38 -0.02 2.33 16 36 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.04 1.99 7.56 -2.39 -0.02 1.97 16 38 H 0.06 2.87 4.99 -2.38 -0.01 2.85 16 39 H 0.05 1.79 8.13 -2.39 -0.02 1.77 16 40 H 0.25 13.73 8.32 -92.71 -0.77 12.96 16 41 H 0.08 2.63 5.50 -2.39 -0.01 2.62 16 42 H 0.04 1.64 7.71 -2.39 -0.02 1.62 16 43 H 0.05 2.05 7.47 -2.39 -0.02 2.03 16 Total: -1.00 -59.68 320.08 5.93 -53.75 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 0.98 Total: 15.48 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: 4.56 Total: -3.86 kcal Atomic # 7 Polarization: -78.75 SS G_CDS: -1.56 Total: -80.31 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: -0.08 Total: -29.52 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -59.68 5.93 -53.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934161542.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.476 kcal (2) G-P(sol) polarization free energy of solvation -59.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds