Wall clock time and date at job start Mon Mar 30 2020 01:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45207 * 109.46687 * 2 1 4 4 C 1.34234 * 116.99424 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00218 * 359.97438 * 4 3 2 6 6 C 1.50696 * 119.99489 * 179.97438 * 4 3 2 7 7 H 1.09000 * 109.49981 * 299.93409 * 6 4 3 8 8 C 1.53042 * 109.50090 * 179.83971 * 6 4 3 9 9 H 1.08999 * 109.46654 * 181.39475 * 8 6 4 10 10 C 1.53003 * 109.46039 * 61.42829 * 8 6 4 11 11 C 1.53050 * 109.53234 * 301.41218 * 8 6 4 12 12 C 1.53620 * 109.24241 * 298.50694 * 11 8 6 13 13 H 1.08997 * 109.73966 * 295.11825 * 12 11 8 14 14 C 1.53001 * 109.66358 * 174.54973 * 12 11 8 15 15 N 1.46928 * 108.54191 * 54.85897 * 12 11 8 16 16 C 1.36931 * 120.63156 * 126.37139 * 15 12 11 17 17 H 1.08004 * 120.00147 * 235.46673 * 16 15 12 18 18 C 1.38813 * 120.00481 * 55.46006 * 16 15 12 19 19 N 1.31614 * 120.00641 * 201.24587 * 18 16 15 20 20 Si 1.86803 * 119.99505 * 21.24801 * 18 16 15 21 21 H 1.48499 * 109.47186 * 265.92094 * 20 18 16 22 22 H 1.48501 * 109.47289 * 145.92033 * 20 18 16 23 23 H 1.48501 * 109.47277 * 25.91966 * 20 18 16 24 24 C 1.46930 * 118.73579 * 306.09227 * 15 12 11 25 25 H 1.08998 * 109.58812 * 293.92549 * 24 15 12 26 26 C 1.53009 * 109.58440 * 173.64979 * 24 15 12 27 27 H 1.08997 * 109.47120 * 300.00203 * 1 2 3 28 28 H 1.09000 * 109.46871 * 60.00440 * 1 2 3 29 29 H 1.09003 * 109.46904 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47544 * 240.00072 * 2 1 3 31 31 H 1.09000 * 109.46871 * 119.99560 * 2 1 3 32 32 H 1.08997 * 109.46658 * 60.00489 * 10 8 6 33 33 H 1.08993 * 109.47210 * 180.02562 * 10 8 6 34 34 H 1.09000 * 109.47318 * 300.00722 * 10 8 6 35 35 H 1.09004 * 109.49405 * 58.58457 * 11 8 6 36 36 H 1.08994 * 109.49336 * 178.64609 * 11 8 6 37 37 H 1.08998 * 109.47042 * 293.92437 * 14 12 11 38 38 H 1.08997 * 109.46872 * 53.93165 * 14 12 11 39 39 H 1.09003 * 109.47015 * 173.92733 * 14 12 11 40 40 H 0.96997 * 120.00553 * 180.02562 * 19 18 16 41 41 H 1.09001 * 109.47002 * 59.99654 * 26 24 15 42 42 H 1.08996 * 109.46985 * 180.02562 * 26 24 15 43 43 H 1.08996 * 109.46678 * 300.00211 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3691 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9206 2.9375 0.0000 7 1 3.5863 3.4691 -0.8909 8 6 5.4490 2.8583 0.0048 9 1 5.8648 3.8655 0.0294 10 6 5.9262 2.1408 -1.2595 11 6 5.9173 2.0831 1.2386 12 6 5.4681 2.8277 2.5050 13 1 5.9701 3.7935 2.5617 14 6 5.8117 1.9943 3.7413 15 7 4.0146 3.0312 2.4365 16 6 3.2039 2.6229 3.4617 17 1 2.3801 1.9529 3.2647 18 6 3.4410 3.0699 4.7544 19 7 2.9698 2.3947 5.7811 20 14 4.4288 4.6301 5.0365 21 1 5.8554 4.2802 5.2543 22 1 3.9048 5.3384 6.2319 23 1 4.3115 5.5121 3.8476 24 6 3.4482 3.6868 1.2498 25 1 3.7867 4.7220 1.2077 26 6 1.9204 3.6494 1.3234 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.5937 2.6934 -2.1382 33 1 7.0146 2.0839 -1.2560 34 1 5.5101 1.1337 -1.2847 35 1 5.4819 1.0838 1.2272 36 1 7.0045 2.0063 1.2288 37 1 5.2176 1.0805 3.7401 38 1 6.8712 1.7390 3.7243 39 1 5.5910 2.5700 4.6402 40 1 3.1351 2.7073 6.6843 41 1 1.5869 4.1721 2.2200 42 1 1.5022 4.1357 0.4421 43 1 1.5837 2.6134 1.3604 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934161543.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:18 Heat of formation + Delta-G solvation = -66.868758 kcal Electronic energy + Delta-G solvation = -23467.533050 eV Core-core repulsion = 20320.618245 eV Total energy + Delta-G solvation = -3146.914805 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.55197 -38.01329 -36.15823 -33.94211 -33.04338 -31.47007 -31.27024 -28.14636 -26.71208 -26.20433 -23.98119 -23.21275 -21.47670 -20.24378 -19.87365 -19.28449 -17.19409 -16.52822 -16.32016 -15.34839 -15.05016 -14.31149 -14.23677 -13.92172 -13.55563 -13.30154 -12.90703 -12.61541 -12.47527 -12.35481 -12.15655 -11.86519 -11.71766 -11.67859 -11.42692 -11.10659 -11.05071 -10.84265 -10.76494 -10.54022 -10.35002 -10.30304 -9.91617 -9.89972 -9.67197 -9.52517 -9.28119 -9.17321 -8.35602 -6.42933 -5.99062 -3.58367 2.85035 3.22613 3.35671 3.47703 3.55911 4.54412 4.93832 5.00503 5.18155 5.19858 5.25455 5.28482 5.41300 5.51493 5.56276 5.73671 5.90524 5.92928 5.97856 6.04044 6.13996 6.15524 6.19293 6.25539 6.33935 6.38117 6.44172 6.54982 6.60047 6.61978 6.68868 6.82162 6.86602 7.01543 7.11394 7.33251 7.40676 7.50920 8.14267 8.41293 8.57983 9.06689 9.71268 10.26917 11.13344 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.017796 B = 0.009452 C = 0.007476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.971974 B = 2961.598664 C = 3744.418395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.347 6.347 4 C 0.490 3.510 5 O -0.509 6.509 6 C -0.092 4.092 7 H 0.094 0.906 8 C -0.069 4.069 9 H 0.071 0.929 10 C -0.157 4.157 11 C -0.139 4.139 12 C 0.163 3.837 13 H 0.021 0.979 14 C -0.139 4.139 15 N -0.596 5.596 16 C -0.266 4.266 17 H 0.068 0.932 18 C 0.059 3.941 19 N -0.893 5.893 20 Si 0.872 3.128 21 H -0.281 1.281 22 H -0.302 1.302 23 H -0.269 1.269 24 C 0.171 3.829 25 H 0.041 0.959 26 C -0.144 4.144 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.042 0.958 33 H 0.049 0.951 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.048 0.952 37 H 0.068 0.932 38 H 0.031 0.969 39 H 0.063 0.937 40 H 0.263 0.737 41 H 0.063 0.937 42 H 0.037 0.963 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.072 -0.339 -12.443 12.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.264 6.264 4 C 0.335 3.665 5 O -0.397 6.397 6 C -0.113 4.113 7 H 0.112 0.888 8 C -0.087 4.087 9 H 0.090 0.910 10 C -0.214 4.214 11 C -0.177 4.177 12 C 0.058 3.942 13 H 0.039 0.961 14 C -0.196 4.196 15 N -0.322 5.322 16 C -0.395 4.395 17 H 0.086 0.914 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.700 3.300 21 H -0.208 1.208 22 H -0.230 1.230 23 H -0.194 1.194 24 C 0.065 3.935 25 H 0.058 0.942 26 C -0.201 4.201 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.111 0.889 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.050 0.950 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.056 0.944 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.218 -0.683 -12.234 12.255 hybrid contribution 0.687 0.834 0.317 1.126 sum 0.906 0.150 -11.917 11.952 Atomic orbital electron populations 1.21771 0.93190 1.02370 1.03367 1.22892 0.95014 0.81545 1.02013 1.86661 1.25082 1.30888 1.83778 1.23424 0.80021 0.92380 0.70713 1.90463 1.59798 1.43589 1.45841 1.21815 0.96256 0.90750 1.02464 0.88847 1.20886 0.92136 0.99606 0.96106 0.91043 1.22071 1.00759 1.02295 0.96290 1.22479 0.99121 1.01937 0.94196 1.20780 0.85215 0.94823 0.93407 0.96102 1.21998 0.97851 1.01643 0.98156 1.44490 1.01614 1.68163 1.17959 1.18324 1.12051 1.23953 0.85181 0.91424 1.25871 0.95869 0.96539 0.96046 1.69886 1.46971 1.37970 0.98424 0.87137 0.79798 0.85965 0.77074 1.20785 1.22993 1.19391 1.20584 0.94259 0.93307 0.85331 0.94160 1.22042 0.94001 1.03936 1.00078 0.91167 0.92001 0.90890 0.92223 0.91219 0.93883 0.93174 0.90618 0.88932 0.93337 0.91339 0.95005 0.91812 0.92750 0.91791 0.94378 0.90073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 10.29 37.16 0.38 -1.39 16 2 C 0.06 0.89 6.19 37.16 0.23 1.12 16 3 O -0.35 -6.02 6.96 -39.27 -0.27 -6.30 16 4 C 0.49 9.09 6.25 36.00 0.23 9.31 16 5 O -0.51 -10.20 11.11 -18.75 -0.21 -10.41 16 6 C -0.09 -1.58 2.27 -91.66 -0.21 -1.79 16 7 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 8 C -0.07 -1.14 2.42 -90.57 -0.22 -1.36 16 9 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 10 C -0.16 -2.29 8.91 37.16 0.33 -1.96 16 11 C -0.14 -2.64 4.38 -26.38 -0.12 -2.76 16 12 C 0.16 3.56 2.34 -67.37 -0.16 3.40 16 13 H 0.02 0.47 7.57 -51.93 -0.39 0.07 16 14 C -0.14 -3.19 7.83 37.16 0.29 -2.89 16 15 N -0.60 -13.79 1.87 -157.03 -0.29 -14.08 16 16 C -0.27 -7.09 7.01 -15.06 -0.11 -7.19 16 17 H 0.07 2.00 7.41 -52.48 -0.39 1.61 16 18 C 0.06 1.63 3.95 -17.43 -0.07 1.56 16 19 N -0.89 -26.23 13.97 55.49 0.78 -25.46 16 20 Si 0.87 21.94 24.86 -169.99 -4.23 17.72 16 21 H -0.28 -6.94 6.41 56.52 0.36 -6.58 16 22 H -0.30 -7.75 7.11 56.52 0.40 -7.34 16 23 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 24 C 0.17 3.39 3.20 -67.59 -0.22 3.18 16 25 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 26 C -0.14 -2.74 7.49 37.16 0.28 -2.46 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 31 H 0.07 1.16 8.13 -51.93 -0.42 0.73 16 32 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 1.24 5.64 -51.93 -0.29 0.94 16 35 H 0.09 1.98 5.38 -51.93 -0.28 1.70 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 1.70 7.65 -51.93 -0.40 1.30 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 1.58 3.30 -51.93 -0.17 1.41 16 40 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.06 1.33 7.68 -51.93 -0.40 0.93 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.08 1.65 4.66 -51.93 -0.24 1.40 16 LS Contribution 315.37 15.07 4.75 4.75 Total: -1.00 -29.47 315.37 -6.06 -35.53 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -7.23 Total: 1.47 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: 0.65 Total: -3.23 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: 0.48 Total: -39.54 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -0.48 Total: -16.70 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.23 Total: 17.72 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.47 -6.06 -35.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934161543.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.338 kcal (2) G-P(sol) polarization free energy of solvation -29.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds