Wall clock time and date at job start Mon Mar 30 2020 01:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45207 * 109.46687 * 2 1 4 4 C 1.34234 * 116.99424 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00218 * 359.97438 * 4 3 2 6 6 C 1.50696 * 119.99489 * 179.97438 * 4 3 2 7 7 H 1.09000 * 109.49981 * 299.93409 * 6 4 3 8 8 C 1.53042 * 109.50090 * 179.83971 * 6 4 3 9 9 H 1.08999 * 109.46654 * 181.39475 * 8 6 4 10 10 C 1.53003 * 109.46039 * 61.42829 * 8 6 4 11 11 C 1.53050 * 109.53234 * 301.41218 * 8 6 4 12 12 C 1.53620 * 109.24241 * 298.50694 * 11 8 6 13 13 H 1.08997 * 109.73966 * 295.11825 * 12 11 8 14 14 C 1.53001 * 109.66358 * 174.54973 * 12 11 8 15 15 N 1.46928 * 108.54191 * 54.85897 * 12 11 8 16 16 C 1.36931 * 120.63156 * 126.37139 * 15 12 11 17 17 H 1.08004 * 120.00147 * 235.46673 * 16 15 12 18 18 C 1.38813 * 120.00481 * 55.46006 * 16 15 12 19 19 N 1.31614 * 120.00641 * 201.24587 * 18 16 15 20 20 Si 1.86803 * 119.99505 * 21.24801 * 18 16 15 21 21 H 1.48499 * 109.47186 * 265.92094 * 20 18 16 22 22 H 1.48501 * 109.47289 * 145.92033 * 20 18 16 23 23 H 1.48501 * 109.47277 * 25.91966 * 20 18 16 24 24 C 1.46930 * 118.73579 * 306.09227 * 15 12 11 25 25 H 1.08998 * 109.58812 * 293.92549 * 24 15 12 26 26 C 1.53009 * 109.58440 * 173.64979 * 24 15 12 27 27 H 1.08997 * 109.47120 * 300.00203 * 1 2 3 28 28 H 1.09000 * 109.46871 * 60.00440 * 1 2 3 29 29 H 1.09003 * 109.46904 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47544 * 240.00072 * 2 1 3 31 31 H 1.09000 * 109.46871 * 119.99560 * 2 1 3 32 32 H 1.08997 * 109.46658 * 60.00489 * 10 8 6 33 33 H 1.08993 * 109.47210 * 180.02562 * 10 8 6 34 34 H 1.09000 * 109.47318 * 300.00722 * 10 8 6 35 35 H 1.09004 * 109.49405 * 58.58457 * 11 8 6 36 36 H 1.08994 * 109.49336 * 178.64609 * 11 8 6 37 37 H 1.08998 * 109.47042 * 293.92437 * 14 12 11 38 38 H 1.08997 * 109.46872 * 53.93165 * 14 12 11 39 39 H 1.09003 * 109.47015 * 173.92733 * 14 12 11 40 40 H 0.96997 * 120.00553 * 180.02562 * 19 18 16 41 41 H 1.09001 * 109.47002 * 59.99654 * 26 24 15 42 42 H 1.08996 * 109.46985 * 180.02562 * 26 24 15 43 43 H 1.08996 * 109.46678 * 300.00211 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3691 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9206 2.9375 0.0000 7 1 3.5863 3.4691 -0.8909 8 6 5.4490 2.8583 0.0048 9 1 5.8648 3.8655 0.0294 10 6 5.9262 2.1408 -1.2595 11 6 5.9173 2.0831 1.2386 12 6 5.4681 2.8277 2.5050 13 1 5.9701 3.7935 2.5617 14 6 5.8117 1.9943 3.7413 15 7 4.0146 3.0312 2.4365 16 6 3.2039 2.6229 3.4617 17 1 2.3801 1.9529 3.2647 18 6 3.4410 3.0699 4.7544 19 7 2.9698 2.3947 5.7811 20 14 4.4288 4.6301 5.0365 21 1 5.8554 4.2802 5.2543 22 1 3.9048 5.3384 6.2319 23 1 4.3115 5.5121 3.8476 24 6 3.4482 3.6868 1.2498 25 1 3.7867 4.7220 1.2077 26 6 1.9204 3.6494 1.3234 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.5937 2.6934 -2.1382 33 1 7.0146 2.0839 -1.2560 34 1 5.5101 1.1337 -1.2847 35 1 5.4819 1.0838 1.2272 36 1 7.0045 2.0063 1.2288 37 1 5.2176 1.0805 3.7401 38 1 6.8712 1.7390 3.7243 39 1 5.5910 2.5700 4.6402 40 1 3.1351 2.7073 6.6843 41 1 1.5869 4.1721 2.2200 42 1 1.5022 4.1357 0.4421 43 1 1.5837 2.6134 1.3604 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934161543.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:17 Heat of formation + Delta-G solvation = -83.661272 kcal Electronic energy + Delta-G solvation = -23468.261229 eV Core-core repulsion = 20320.618245 eV Total energy + Delta-G solvation = -3147.642983 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.98451 -39.53534 -37.63832 -35.59477 -34.58862 -33.42534 -32.44136 -29.82819 -28.16643 -27.83541 -25.75066 -24.52881 -22.83129 -21.84346 -21.56755 -20.72943 -18.85431 -18.16661 -17.77547 -16.90753 -16.87782 -15.94413 -15.63177 -15.48057 -15.01983 -14.83947 -14.49012 -14.36934 -14.02070 -13.65845 -13.51535 -13.35185 -13.16039 -13.15274 -12.74336 -12.70618 -12.51378 -12.46335 -12.23315 -12.16186 -12.02108 -11.82519 -11.79453 -11.58736 -11.18401 -11.04328 -11.00681 -10.63020 -10.45152 -8.34418 -8.11291 -5.70470 1.34651 1.42068 1.42908 1.53587 1.93933 2.46546 3.08541 3.34768 3.68081 3.91143 3.97208 4.05380 4.14069 4.23223 4.28925 4.38728 4.49169 4.53987 4.65647 4.76314 4.78654 4.83967 4.85962 4.90259 4.90901 4.96526 5.00970 5.15263 5.16989 5.21914 5.24164 5.26069 5.39268 5.48702 5.55324 5.61502 5.77484 5.92834 6.06155 6.39398 7.00782 7.16377 7.66119 8.24435 9.03099 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.017796 B = 0.009452 C = 0.007476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.971974 B = 2961.598664 C = 3744.418395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.054 3.946 3 O -0.352 6.352 4 C 0.481 3.519 5 O -0.529 6.529 6 C -0.088 4.088 7 H 0.133 0.867 8 C -0.068 4.068 9 H 0.093 0.907 10 C -0.148 4.148 11 C -0.131 4.131 12 C 0.156 3.844 13 H 0.032 0.968 14 C -0.134 4.134 15 N -0.608 5.608 16 C -0.242 4.242 17 H 0.024 0.976 18 C 0.014 3.986 19 N -0.941 5.941 20 Si 0.926 3.074 21 H -0.272 1.272 22 H -0.311 1.311 23 H -0.259 1.259 24 C 0.164 3.836 25 H 0.056 0.944 26 C -0.138 4.138 27 H 0.053 0.947 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.041 0.959 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.034 0.966 38 H 0.061 0.939 39 H 0.042 0.958 40 H 0.261 0.739 41 H 0.037 0.963 42 H 0.075 0.925 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.188 1.300 -15.195 15.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.019 4.019 3 O -0.269 6.269 4 C 0.327 3.673 5 O -0.419 6.419 6 C -0.108 4.108 7 H 0.150 0.850 8 C -0.086 4.086 9 H 0.111 0.889 10 C -0.206 4.206 11 C -0.170 4.170 12 C 0.052 3.948 13 H 0.049 0.951 14 C -0.192 4.192 15 N -0.335 5.335 16 C -0.372 4.372 17 H 0.041 0.959 18 C -0.184 4.184 19 N -0.583 5.583 20 Si 0.754 3.246 21 H -0.198 1.198 22 H -0.239 1.239 23 H -0.183 1.183 24 C 0.059 3.941 25 H 0.074 0.926 26 C -0.195 4.195 27 H 0.072 0.928 28 H 0.098 0.902 29 H 0.115 0.885 30 H 0.092 0.908 31 H 0.059 0.941 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.053 0.947 38 H 0.080 0.920 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.056 0.944 42 H 0.093 0.907 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.340 0.968 -15.026 15.116 hybrid contribution 0.296 0.209 1.127 1.184 sum 1.637 1.177 -13.898 14.044 Atomic orbital electron populations 1.21768 0.90643 1.04022 1.03383 1.23088 0.97033 0.80534 1.01280 1.86651 1.24712 1.32123 1.83437 1.23856 0.80242 0.92950 0.70253 1.90466 1.60271 1.44432 1.46754 1.21864 0.96848 0.89734 1.02400 0.84966 1.20945 0.91559 1.00488 0.95654 0.88893 1.21963 1.01476 1.01060 0.96055 1.22340 1.00165 1.00396 0.94110 1.20910 0.84437 0.95311 0.94173 0.95066 1.21923 0.99166 0.99967 0.98102 1.44604 1.01954 1.68745 1.18198 1.17976 1.10808 1.22141 0.86273 0.95866 1.26331 0.97423 0.98856 0.95771 1.70003 1.49829 1.39699 0.98779 0.86244 0.78926 0.82670 0.76798 1.19850 1.23897 1.18290 1.20783 0.94383 0.94057 0.84852 0.92602 1.21968 0.94057 1.02868 1.00558 0.92755 0.90237 0.88464 0.90793 0.94085 0.91392 0.91880 0.92790 0.91715 0.91317 0.94694 0.92042 0.93960 0.93007 0.94383 0.90653 0.91902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 10.29 71.98 0.74 -2.47 16 2 C 0.05 1.63 6.19 71.98 0.45 2.07 16 3 O -0.35 -12.04 6.96 -51.45 -0.36 -12.40 16 4 C 0.48 17.32 6.25 71.23 0.45 17.77 16 5 O -0.53 -21.10 11.11 21.98 0.24 -20.86 16 6 C -0.09 -2.75 2.27 -11.46 -0.03 -2.77 16 7 H 0.13 3.15 8.14 -2.39 -0.02 3.13 16 8 C -0.07 -2.00 2.42 -10.76 -0.03 -2.03 16 9 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 10 C -0.15 -3.74 8.91 71.98 0.64 -3.10 16 11 C -0.13 -4.73 4.38 30.82 0.13 -4.59 16 12 C 0.16 6.58 2.34 45.12 0.11 6.68 16 13 H 0.03 1.28 7.57 -2.39 -0.02 1.26 16 14 C -0.13 -6.13 7.83 71.98 0.56 -5.56 16 15 N -0.61 -27.78 1.87 -650.73 -1.22 -29.00 16 16 C -0.24 -13.27 7.01 84.03 0.59 -12.68 16 17 H 0.02 1.48 7.41 -2.91 -0.02 1.46 16 18 C 0.01 0.81 3.95 84.86 0.34 1.15 16 19 N -0.94 -57.59 13.97 21.65 0.30 -57.29 16 20 Si 0.93 45.48 24.86 68.60 1.71 47.19 16 21 H -0.27 -12.87 6.41 99.48 0.64 -12.23 16 22 H -0.31 -15.58 7.11 99.48 0.71 -14.87 16 23 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 24 C 0.16 6.14 3.20 44.98 0.14 6.28 16 25 H 0.06 1.97 8.14 -2.39 -0.02 1.96 16 26 C -0.14 -5.10 7.49 71.99 0.54 -4.56 16 27 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.08 1.53 8.14 -2.39 -0.02 1.52 16 29 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.07 1.98 8.13 -2.39 -0.02 1.96 16 31 H 0.04 1.44 8.13 -2.39 -0.02 1.42 16 32 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.05 1.63 5.64 -2.39 -0.01 1.61 16 35 H 0.06 2.74 5.38 -2.38 -0.01 2.72 16 36 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.03 1.77 7.65 -2.39 -0.02 1.76 16 38 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.04 2.09 3.30 -2.39 -0.01 2.08 16 40 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 41 H 0.04 1.57 7.68 -2.39 -0.02 1.55 16 42 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.06 2.57 4.66 -2.39 -0.01 2.56 16 Total: -1.00 -66.52 315.37 6.22 -60.30 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: 0.91 Total: 15.85 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: 4.63 Total: -3.80 kcal Atomic # 7 Polarization: -85.37 SS G_CDS: -0.92 Total: -86.28 kcal Atomic # 8 Polarization: -33.14 SS G_CDS: -0.11 Total: -33.25 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 1.71 Total: 47.19 kcal Total: -66.52 6.22 -60.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934161543.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.361 kcal (2) G-P(sol) polarization free energy of solvation -66.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds