Wall clock time and date at job start Mon Mar 30 2020 00:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 114.00164 * 2 1 4 4 C 1.53002 * 109.47050 * 179.97438 * 3 2 1 5 5 C 1.50705 * 110.01176 * 66.02967 * 4 3 2 6 6 O 1.21282 * 119.99670 * 251.85578 * 5 4 3 7 7 N 1.34773 * 120.00000 * 71.86947 * 5 4 3 8 8 C 1.46499 * 120.00193 * 5.39233 * 7 5 4 9 9 C 1.46499 * 119.99879 * 185.39938 * 7 5 4 10 10 H 1.09005 * 109.47250 * 359.97438 * 9 7 5 11 11 C 1.53003 * 109.47238 * 239.99741 * 9 7 5 12 12 C 1.50694 * 109.47435 * 119.99531 * 9 7 5 13 13 H 1.08010 * 119.99984 * 359.97438 * 12 9 7 14 14 C 1.37872 * 120.00488 * 180.02562 * 12 9 7 15 15 N 1.31515 * 120.00010 * 359.97438 * 14 12 9 16 16 Si 1.86807 * 120.00611 * 180.02562 * 14 12 9 17 17 H 1.48503 * 109.46877 * 89.99626 * 16 14 12 18 18 H 1.48490 * 109.47546 * 209.99952 * 16 14 12 19 19 H 1.48499 * 109.46538 * 330.00001 * 16 14 12 20 20 C 1.54261 * 110.03247 * 304.63826 * 4 3 2 21 21 C 1.54967 * 104.15783 * 217.13168 * 20 4 3 22 22 C 1.54897 * 102.77591 * 37.89327 * 21 20 4 23 23 C 1.53878 * 110.03243 * 187.41759 * 4 3 2 24 24 H 1.09000 * 109.46973 * 59.99557 * 1 2 3 25 25 H 1.08997 * 109.47287 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46450 * 300.00056 * 1 2 3 27 27 H 1.09007 * 109.46926 * 60.00083 * 3 2 1 28 28 H 1.09001 * 109.47544 * 300.00171 * 3 2 1 29 29 H 1.08999 * 109.46899 * 85.00195 * 8 7 5 30 30 H 1.09003 * 109.47113 * 205.00011 * 8 7 5 31 31 H 1.08998 * 109.47551 * 325.00172 * 8 7 5 32 32 H 1.09002 * 109.46994 * 179.97438 * 11 9 7 33 33 H 1.08998 * 109.46616 * 299.99770 * 11 9 7 34 34 H 1.09001 * 109.47008 * 59.99834 * 11 9 7 35 35 H 0.97001 * 120.00334 * 179.97438 * 15 14 12 36 36 H 1.09000 * 110.49098 * 335.77912 * 20 4 3 37 37 H 1.09001 * 110.48809 * 98.43317 * 20 4 3 38 38 H 1.08992 * 110.72308 * 279.57704 * 21 20 4 39 39 H 1.09009 * 110.76289 * 156.21971 * 21 20 4 40 40 H 1.08998 * 110.48375 * 203.40551 * 22 21 20 41 41 H 1.08994 * 110.48665 * 80.75896 * 22 21 20 42 42 H 1.09001 * 110.03337 * 238.57536 * 23 4 3 43 43 H 1.08999 * 110.03187 * 0.02562 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.0047 0.5701 -1.2930 6 8 4.4312 -0.5652 -1.3054 7 7 3.9506 1.2822 -2.4359 8 6 3.5479 2.6904 -2.4032 9 6 4.2944 0.6481 -3.7110 10 1 4.5670 -0.3929 -3.5373 11 6 5.4759 1.3851 -4.3450 12 6 3.1082 0.7091 -4.6384 13 1 2.1897 1.1735 -4.3106 14 6 3.1948 0.1713 -5.9049 15 7 4.3129 -0.3946 -6.3040 16 14 1.7245 0.2476 -7.0548 17 1 1.7838 1.4993 -7.8516 18 1 1.7495 -0.9226 -7.9686 19 1 0.4716 0.2268 -6.2580 20 6 3.9967 0.3218 1.1934 21 6 5.3093 0.9974 1.6647 22 6 5.0013 2.5051 1.4877 23 6 4.1742 2.5721 0.1873 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3632 0.5139 0.8900 27 1 1.6887 1.8463 0.8901 28 1 1.6887 1.8464 -0.8900 29 1 4.4156 3.3113 -2.1802 30 1 3.1380 2.9737 -3.3727 31 1 2.7907 2.8340 -1.6325 32 1 5.7319 0.9130 -5.2935 33 1 5.2036 2.4262 -4.5187 34 1 6.3339 1.3409 -3.6743 35 1 4.3737 -0.7733 -7.1949 36 1 3.2514 0.3405 1.9886 37 1 4.1880 -0.7021 0.8723 38 1 6.1457 0.6974 1.0336 39 1 5.5100 0.7644 2.7105 40 1 5.9254 3.0734 1.3817 41 1 4.4182 2.8768 2.3303 42 1 4.8242 2.8006 -0.6573 43 1 3.3975 3.3314 0.2779 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121280282.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:33 Heat of formation + Delta-G solvation = -80.417171 kcal Electronic energy + Delta-G solvation = -22664.822319 eV Core-core repulsion = 19517.320010 eV Total energy + Delta-G solvation = -3147.502308 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.29887 -37.49263 -36.56412 -35.27804 -32.90664 -30.83171 -29.24075 -28.28027 -26.50714 -26.11873 -25.18528 -24.25695 -22.29596 -20.49431 -19.78149 -17.99128 -16.73490 -16.36246 -15.81769 -15.76324 -15.34440 -15.18190 -14.58744 -14.30728 -14.08190 -13.41531 -13.12775 -12.91528 -12.47565 -12.35858 -12.07816 -11.74441 -11.60452 -11.38083 -11.18825 -11.07112 -10.86225 -10.80149 -10.79576 -10.72217 -10.45126 -10.43624 -10.37157 -10.19487 -10.11692 -9.50232 -9.11942 -8.66789 -8.37790 -7.48797 -6.03676 -4.11333 3.27129 3.34250 3.36704 3.51126 3.83018 4.07449 4.42167 4.66066 4.79278 4.93163 5.20082 5.26560 5.28093 5.38292 5.43524 5.53205 5.56887 5.60113 5.64683 5.76620 5.80845 5.86546 5.89975 5.98576 6.04112 6.09872 6.18830 6.29267 6.44410 6.49628 6.65693 6.80891 6.89453 7.12673 7.32014 7.52129 7.60586 7.77003 8.08127 8.25637 8.63375 8.88466 9.18937 9.55163 11.01630 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020736 B = 0.006588 C = 0.005692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.003700 B = 4249.236290 C = 4917.784901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.377 6.377 3 C 0.076 3.924 4 C -0.081 4.081 5 C 0.524 3.476 6 O -0.544 6.544 7 N -0.594 5.594 8 C 0.077 3.923 9 C 0.260 3.740 10 H 0.062 0.938 11 C -0.145 4.145 12 C -0.523 4.523 13 H 0.058 0.942 14 C 0.064 3.936 15 N -0.888 5.888 16 Si 0.897 3.103 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.275 1.275 20 C -0.099 4.099 21 C -0.126 4.126 22 C -0.123 4.123 23 C -0.123 4.123 24 H 0.041 0.959 25 H 0.084 0.916 26 H 0.036 0.964 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.045 0.955 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.092 0.908 33 H 0.028 0.972 34 H 0.010 0.990 35 H 0.263 0.737 36 H 0.066 0.934 37 H 0.089 0.911 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.085 0.915 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.256 8.029 13.859 16.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.295 6.295 3 C -0.001 4.001 4 C -0.084 4.084 5 C 0.310 3.690 6 O -0.422 6.422 7 N -0.325 5.325 8 C -0.067 4.067 9 C 0.159 3.841 10 H 0.080 0.920 11 C -0.204 4.204 12 C -0.562 4.562 13 H 0.076 0.924 14 C -0.138 4.138 15 N -0.526 5.526 16 Si 0.725 3.275 17 H -0.207 1.207 18 H -0.211 1.211 19 H -0.200 1.200 20 C -0.136 4.136 21 C -0.164 4.164 22 C -0.161 4.161 23 C -0.160 4.160 24 H 0.060 0.940 25 H 0.103 0.897 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.097 0.903 31 H 0.074 0.926 32 H 0.110 0.890 33 H 0.047 0.953 34 H 0.029 0.971 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.108 0.892 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.104 0.896 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.837 7.163 13.643 15.667 hybrid contribution -1.163 0.440 -0.813 1.485 sum -4.000 7.603 12.830 15.441 Atomic orbital electron populations 1.22711 0.81480 1.02698 0.99511 1.88013 1.19155 1.27093 1.95236 1.22680 0.91772 0.85394 1.00264 1.21425 0.94118 0.96925 0.95942 1.19980 0.78495 0.85968 0.84535 1.90597 1.47043 1.18685 1.85833 1.48118 1.65570 1.10565 1.08269 1.21946 0.98474 0.83342 1.02953 1.18895 0.93391 0.94083 0.77691 0.92032 1.22078 0.96654 0.99244 1.02416 1.21321 0.98208 1.38484 0.98156 0.92412 1.24888 0.96060 0.94948 0.97899 1.69884 1.25378 1.38111 1.19234 0.86516 0.82824 0.77569 0.80599 1.20658 1.21097 1.20016 1.22242 0.96000 1.00556 0.94830 1.22542 0.98413 0.94750 1.00687 1.22379 0.99522 0.97032 0.97121 1.22592 0.99630 0.94585 0.99205 0.94050 0.89726 0.94577 0.92968 0.92368 0.93643 0.90349 0.92608 0.88951 0.95285 0.97067 0.92735 0.91562 0.89247 0.91343 0.91724 0.91665 0.91789 0.89631 0.91093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.38 -6.50 10.03 -35.23 -0.35 -6.86 16 3 C 0.08 1.14 4.16 37.16 0.15 1.29 16 4 C -0.08 -1.31 0.44 -154.54 -0.07 -1.37 16 5 C 0.52 11.39 6.19 -10.98 -0.07 11.32 16 6 O -0.54 -14.14 14.75 5.56 0.08 -14.06 16 7 N -0.59 -13.02 2.72 -175.26 -0.48 -13.49 16 8 C 0.08 1.31 7.57 59.85 0.45 1.76 16 9 C 0.26 6.81 2.63 -69.08 -0.18 6.62 16 10 H 0.06 1.89 6.91 -51.93 -0.36 1.53 16 11 C -0.15 -3.56 8.97 37.16 0.33 -3.23 16 12 C -0.52 -14.36 7.95 -34.45 -0.27 -14.63 16 13 H 0.06 1.56 7.42 -52.48 -0.39 1.17 16 14 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 15 N -0.89 -25.53 11.32 55.43 0.63 -24.91 16 16 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 C -0.10 -1.52 5.37 -25.03 -0.13 -1.66 16 21 C -0.13 -1.65 6.91 -24.69 -0.17 -1.82 16 22 C -0.12 -1.38 6.83 -25.07 -0.17 -1.55 16 23 C -0.12 -1.58 4.30 -25.61 -0.11 -1.69 16 24 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 26 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.88 5.89 -51.93 -0.31 0.58 16 29 H 0.05 0.68 6.53 -51.93 -0.34 0.34 16 30 H 0.08 1.42 7.10 -51.93 -0.37 1.05 16 31 H 0.06 0.80 3.71 -51.93 -0.19 0.61 16 32 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 33 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 34 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 36 H 0.07 0.91 7.85 -51.93 -0.41 0.50 16 37 H 0.09 1.66 6.73 -51.93 -0.35 1.31 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.09 1.20 4.98 -51.93 -0.26 0.94 16 43 H 0.07 0.75 7.25 -51.93 -0.38 0.37 16 LS Contribution 327.01 15.07 4.93 4.93 Total: -1.00 -32.33 327.01 -6.43 -38.76 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -7.00 Total: 1.10 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: 0.78 Total: -1.73 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.15 Total: -38.40 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.27 Total: -20.91 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.33 -6.43 -38.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121280282.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.657 kcal (2) G-P(sol) polarization free energy of solvation -32.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds