Wall clock time and date at job start Mon Mar 30 2020 00:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 114.00164 * 2 1 4 4 C 1.53002 * 109.47050 * 179.97438 * 3 2 1 5 5 C 1.50705 * 110.01176 * 66.02967 * 4 3 2 6 6 O 1.21282 * 119.99670 * 251.85578 * 5 4 3 7 7 N 1.34773 * 120.00000 * 71.86947 * 5 4 3 8 8 C 1.46499 * 120.00193 * 5.39233 * 7 5 4 9 9 C 1.46499 * 119.99879 * 185.39938 * 7 5 4 10 10 H 1.09005 * 109.47250 * 359.97438 * 9 7 5 11 11 C 1.53003 * 109.47238 * 239.99741 * 9 7 5 12 12 C 1.50694 * 109.47435 * 119.99531 * 9 7 5 13 13 H 1.08010 * 119.99984 * 359.97438 * 12 9 7 14 14 C 1.37872 * 120.00488 * 180.02562 * 12 9 7 15 15 N 1.31515 * 120.00010 * 359.97438 * 14 12 9 16 16 Si 1.86807 * 120.00611 * 180.02562 * 14 12 9 17 17 H 1.48503 * 109.46877 * 89.99626 * 16 14 12 18 18 H 1.48490 * 109.47546 * 209.99952 * 16 14 12 19 19 H 1.48499 * 109.46538 * 330.00001 * 16 14 12 20 20 C 1.54261 * 110.03247 * 304.63826 * 4 3 2 21 21 C 1.54967 * 104.15783 * 217.13168 * 20 4 3 22 22 C 1.54897 * 102.77591 * 37.89327 * 21 20 4 23 23 C 1.53878 * 110.03243 * 187.41759 * 4 3 2 24 24 H 1.09000 * 109.46973 * 59.99557 * 1 2 3 25 25 H 1.08997 * 109.47287 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46450 * 300.00056 * 1 2 3 27 27 H 1.09007 * 109.46926 * 60.00083 * 3 2 1 28 28 H 1.09001 * 109.47544 * 300.00171 * 3 2 1 29 29 H 1.08999 * 109.46899 * 85.00195 * 8 7 5 30 30 H 1.09003 * 109.47113 * 205.00011 * 8 7 5 31 31 H 1.08998 * 109.47551 * 325.00172 * 8 7 5 32 32 H 1.09002 * 109.46994 * 179.97438 * 11 9 7 33 33 H 1.08998 * 109.46616 * 299.99770 * 11 9 7 34 34 H 1.09001 * 109.47008 * 59.99834 * 11 9 7 35 35 H 0.97001 * 120.00334 * 179.97438 * 15 14 12 36 36 H 1.09000 * 110.49098 * 335.77912 * 20 4 3 37 37 H 1.09001 * 110.48809 * 98.43317 * 20 4 3 38 38 H 1.08992 * 110.72308 * 279.57704 * 21 20 4 39 39 H 1.09009 * 110.76289 * 156.21971 * 21 20 4 40 40 H 1.08998 * 110.48375 * 203.40551 * 22 21 20 41 41 H 1.08994 * 110.48665 * 80.75896 * 22 21 20 42 42 H 1.09001 * 110.03337 * 238.57536 * 23 4 3 43 43 H 1.08999 * 110.03187 * 0.02562 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.0047 0.5701 -1.2930 6 8 4.4312 -0.5652 -1.3054 7 7 3.9506 1.2822 -2.4359 8 6 3.5479 2.6904 -2.4032 9 6 4.2944 0.6481 -3.7110 10 1 4.5670 -0.3929 -3.5373 11 6 5.4759 1.3851 -4.3450 12 6 3.1082 0.7091 -4.6384 13 1 2.1897 1.1735 -4.3106 14 6 3.1948 0.1713 -5.9049 15 7 4.3129 -0.3946 -6.3040 16 14 1.7245 0.2476 -7.0548 17 1 1.7838 1.4993 -7.8516 18 1 1.7495 -0.9226 -7.9686 19 1 0.4716 0.2268 -6.2580 20 6 3.9967 0.3218 1.1934 21 6 5.3093 0.9974 1.6647 22 6 5.0013 2.5051 1.4877 23 6 4.1742 2.5721 0.1873 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3632 0.5139 0.8900 27 1 1.6887 1.8463 0.8901 28 1 1.6887 1.8464 -0.8900 29 1 4.4156 3.3113 -2.1802 30 1 3.1380 2.9737 -3.3727 31 1 2.7907 2.8340 -1.6325 32 1 5.7319 0.9130 -5.2935 33 1 5.2036 2.4262 -4.5187 34 1 6.3339 1.3409 -3.6743 35 1 4.3737 -0.7733 -7.1949 36 1 3.2514 0.3405 1.9886 37 1 4.1880 -0.7021 0.8723 38 1 6.1457 0.6974 1.0336 39 1 5.5100 0.7644 2.7105 40 1 5.9254 3.0734 1.3817 41 1 4.4182 2.8768 2.3303 42 1 4.8242 2.8006 -0.6573 43 1 3.3975 3.3314 0.2779 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121280282.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:33 Heat of formation + Delta-G solvation = -101.999143 kcal Electronic energy + Delta-G solvation = -22665.758183 eV Core-core repulsion = 19517.320010 eV Total energy + Delta-G solvation = -3148.438173 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.72937 -38.89634 -37.79244 -37.11781 -34.85514 -32.29525 -30.79452 -29.53002 -27.62746 -27.56340 -27.31259 -25.41530 -23.94684 -21.54695 -21.41201 -19.53610 -18.40572 -18.01640 -17.36148 -17.02561 -16.87315 -16.42960 -16.21750 -15.60962 -15.56030 -14.88511 -14.51967 -14.31966 -14.12272 -13.71992 -13.58570 -13.28896 -13.07802 -12.91966 -12.76360 -12.68460 -12.49756 -12.34164 -12.20878 -12.14390 -11.94417 -11.78769 -11.70408 -11.59524 -11.36750 -11.20102 -10.69072 -10.56204 -10.24360 -9.28213 -8.15474 -6.32444 1.38639 1.40924 1.50646 1.87333 2.31816 2.49027 2.82038 3.11952 3.46658 3.70138 3.81606 4.07225 4.18876 4.27157 4.41547 4.47969 4.50579 4.54618 4.58562 4.63213 4.71387 4.75161 4.81138 4.84196 4.84953 4.88300 5.00556 5.05944 5.06855 5.12089 5.20656 5.28427 5.41823 5.46308 5.51995 5.62778 5.67831 6.06036 6.16083 6.25955 6.75783 6.88902 7.32961 7.54084 8.89109 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020736 B = 0.006588 C = 0.005692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.003700 B = 4249.236290 C = 4917.784901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.418 6.418 3 C 0.073 3.927 4 C -0.076 4.076 5 C 0.511 3.489 6 O -0.604 6.604 7 N -0.600 5.600 8 C 0.072 3.928 9 C 0.264 3.736 10 H 0.000 1.000 11 C -0.130 4.130 12 C -0.536 4.536 13 H 0.060 0.940 14 C 0.013 3.987 15 N -0.919 5.919 16 Si 0.966 3.034 17 H -0.265 1.265 18 H -0.286 1.286 19 H -0.271 1.271 20 C -0.099 4.099 21 C -0.126 4.126 22 C -0.112 4.112 23 C -0.121 4.121 24 H 0.038 0.962 25 H 0.085 0.915 26 H 0.069 0.931 27 H 0.097 0.903 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.048 0.952 34 H 0.016 0.984 35 H 0.264 0.736 36 H 0.089 0.911 37 H 0.043 0.957 38 H 0.038 0.962 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.095 0.905 42 H 0.071 0.929 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.036 11.184 15.563 19.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.338 6.338 3 C -0.003 4.003 4 C -0.079 4.079 5 C 0.300 3.700 6 O -0.486 6.486 7 N -0.330 5.330 8 C -0.069 4.069 9 C 0.161 3.839 10 H 0.018 0.982 11 C -0.188 4.188 12 C -0.574 4.574 13 H 0.078 0.922 14 C -0.186 4.186 15 N -0.558 5.558 16 Si 0.791 3.209 17 H -0.190 1.190 18 H -0.212 1.212 19 H -0.196 1.196 20 C -0.136 4.136 21 C -0.164 4.164 22 C -0.150 4.150 23 C -0.158 4.158 24 H 0.057 0.943 25 H 0.104 0.896 26 H 0.087 0.913 27 H 0.115 0.885 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.035 0.965 35 H 0.073 0.927 36 H 0.108 0.892 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.106 0.894 40 H 0.096 0.904 41 H 0.113 0.887 42 H 0.090 0.910 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.630 10.372 15.361 19.104 hybrid contribution -0.591 -0.623 -1.319 1.574 sum -5.220 9.749 14.042 17.874 Atomic orbital electron populations 1.22885 0.79600 1.03401 1.00944 1.87978 1.21431 1.28787 1.95555 1.22849 0.90377 0.84965 1.02143 1.21517 0.95514 0.98647 0.92250 1.21130 0.77270 0.85346 0.86287 1.90563 1.49578 1.21520 1.86964 1.48121 1.65450 1.12526 1.06938 1.22238 1.00567 0.80533 1.03589 1.18474 0.93886 0.91667 0.79840 0.98196 1.21853 0.96245 0.99733 1.01000 1.21558 0.98558 1.38688 0.98633 0.92189 1.25776 0.98879 0.94402 0.99580 1.70038 1.27420 1.38710 1.19661 0.85435 0.79133 0.77986 0.78337 1.18953 1.21177 1.19566 1.22223 0.98018 0.98189 0.95221 1.22541 0.96053 0.96450 1.01339 1.22378 1.00308 0.95141 0.97143 1.22650 1.00519 0.92931 0.99742 0.94310 0.89622 0.91268 0.88476 0.92697 0.90893 0.91474 0.89321 0.91522 0.93270 0.96485 0.92658 0.89209 0.93831 0.94263 0.89372 0.90413 0.88674 0.91012 0.87351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 11.01 113.37 1.25 1.92 16 2 O -0.42 -14.05 10.03 -148.98 -1.49 -15.55 16 3 C 0.07 1.98 4.16 71.98 0.30 2.28 16 4 C -0.08 -2.35 0.44 -52.20 -0.02 -2.38 16 5 C 0.51 22.90 6.19 87.66 0.54 23.44 16 6 O -0.60 -33.88 14.75 -3.04 -0.04 -33.92 16 7 N -0.60 -26.74 2.72 -826.80 -2.25 -28.99 16 8 C 0.07 2.34 7.57 127.77 0.97 3.31 16 9 C 0.26 14.44 2.63 44.24 0.12 14.56 16 10 H 0.00 0.00 6.91 -2.38 -0.02 -0.01 16 11 C -0.13 -6.54 8.97 71.98 0.65 -5.90 16 12 C -0.54 -30.11 7.95 25.60 0.20 -29.90 16 13 H 0.06 3.26 7.42 -2.91 -0.02 3.24 16 14 C 0.01 0.73 5.30 84.65 0.45 1.18 16 15 N -0.92 -54.66 11.32 21.45 0.24 -54.42 16 16 Si 0.97 43.90 29.54 68.60 2.03 45.93 16 17 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 18 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 19 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 20 C -0.10 -2.98 5.37 31.69 0.17 -2.81 16 21 C -0.13 -3.09 6.91 31.92 0.22 -2.87 16 22 C -0.11 -2.04 6.83 31.67 0.22 -1.82 16 23 C -0.12 -2.66 4.30 31.32 0.13 -2.52 16 24 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.10 1.79 8.14 -2.38 -0.02 1.78 16 28 H 0.06 1.50 5.89 -2.39 -0.01 1.49 16 29 H 0.07 1.97 6.53 -2.39 -0.02 1.95 16 30 H 0.07 2.33 7.10 -2.39 -0.02 2.31 16 31 H 0.09 2.26 3.71 -2.39 -0.01 2.25 16 32 H 0.07 3.71 6.07 -2.39 -0.01 3.70 16 33 H 0.05 2.22 7.67 -2.39 -0.02 2.20 16 34 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 36 H 0.09 2.25 7.85 -2.39 -0.02 2.23 16 37 H 0.04 1.71 6.73 -2.39 -0.02 1.70 16 38 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 40 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.07 1.80 4.98 -2.39 -0.01 1.78 16 43 H 0.11 1.61 7.25 -2.39 -0.02 1.59 16 Total: -1.00 -76.88 327.01 4.66 -72.22 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 0.99 Total: 16.24 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: 5.19 Total: -1.52 kcal Atomic # 7 Polarization: -81.40 SS G_CDS: -2.00 Total: -83.40 kcal Atomic # 8 Polarization: -47.93 SS G_CDS: -1.54 Total: -49.47 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -76.88 4.66 -72.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121280282.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.776 kcal (2) G-P(sol) polarization free energy of solvation -76.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds