Wall clock time and date at job start Mon Mar 30 2020 00:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 114.00075 * 2 1 4 4 C 1.53003 * 109.46985 * 180.02562 * 3 2 1 5 5 C 1.50696 * 110.43440 * 307.09586 * 4 3 2 6 6 O 1.21287 * 119.99678 * 103.58444 * 5 4 3 7 7 N 1.34779 * 120.00559 * 283.58801 * 5 4 3 8 8 C 1.46500 * 119.99622 * 5.35487 * 7 5 4 9 9 C 1.46497 * 120.00270 * 185.35377 * 7 5 4 10 10 H 1.09008 * 109.46931 * 359.97438 * 9 7 5 11 11 C 1.52999 * 109.47294 * 119.99685 * 9 7 5 12 12 C 1.50700 * 109.47030 * 240.00107 * 9 7 5 13 13 H 1.07996 * 120.00229 * 335.13085 * 12 9 7 14 14 C 1.37879 * 119.99766 * 155.13558 * 12 9 7 15 15 N 1.31510 * 120.00235 * 355.09064 * 14 12 9 16 16 Si 1.86803 * 119.99908 * 175.09688 * 14 12 9 17 17 H 1.48497 * 109.46832 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47335 * 119.99580 * 16 14 12 19 19 H 1.48495 * 109.47145 * 239.99931 * 16 14 12 20 20 C 1.54887 * 110.48740 * 69.64202 * 4 3 2 21 21 C 1.55238 * 102.58758 * 156.67335 * 20 4 3 22 22 C 1.54268 * 104.22985 * 322.08480 * 21 20 4 23 23 C 1.53868 * 106.60145 * 23.61104 * 22 21 20 24 24 H 1.08992 * 109.47328 * 59.99505 * 1 2 3 25 25 H 1.08997 * 109.46765 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46675 * 299.99430 * 1 2 3 27 27 H 1.08999 * 109.46658 * 60.00821 * 3 2 1 28 28 H 1.08998 * 109.47162 * 300.00655 * 3 2 1 29 29 H 1.09007 * 109.46734 * 267.11326 * 8 7 5 30 30 H 1.09000 * 109.47120 * 27.10838 * 8 7 5 31 31 H 1.08996 * 109.47134 * 147.11267 * 8 7 5 32 32 H 1.08996 * 109.46997 * 295.07449 * 11 9 7 33 33 H 1.08999 * 109.46616 * 55.07173 * 11 9 7 34 34 H 1.09001 * 109.47104 * 175.06626 * 11 9 7 35 35 H 0.97001 * 119.99935 * 5.10938 * 15 14 12 36 36 H 1.08994 * 110.75599 * 275.06425 * 20 4 3 37 37 H 1.08999 * 110.75598 * 38.43565 * 20 4 3 38 38 H 1.08997 * 110.47002 * 203.39784 * 21 20 4 39 39 H 1.08998 * 110.46696 * 80.77518 * 21 20 4 40 40 H 1.08993 * 110.03478 * 264.32190 * 22 21 20 41 41 H 1.09005 * 110.03183 * 142.89705 * 22 21 20 42 42 H 1.09003 * 110.03434 * 240.71356 * 23 22 21 43 43 H 1.09005 * 110.03781 * 119.28276 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 3.9932 0.2938 1.1254 6 8 4.3473 -0.8429 0.8937 7 7 4.0089 0.7600 2.3898 8 6 3.4719 2.0903 2.6867 9 6 4.5631 -0.0634 3.4673 10 1 4.9107 -1.0119 3.0577 11 6 5.7360 0.6716 4.1192 12 6 3.4968 -0.3235 4.5000 13 1 2.6697 0.3627 4.6068 14 6 3.5772 -1.4374 5.3085 15 7 4.5299 -2.3230 5.1150 16 14 2.3327 -1.6887 6.6788 17 1 1.3705 -0.5577 6.6871 18 1 1.5999 -2.9608 6.4548 19 1 3.0385 -1.7472 7.9839 20 6 4.0355 0.6389 -1.3612 21 6 5.5018 1.1462 -1.4110 22 6 5.4376 2.5536 -0.7825 23 6 4.1875 2.5780 0.1142 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5137 0.8900 27 1 1.6887 1.8463 0.8901 28 1 1.6885 1.8464 -0.8899 29 1 4.2769 2.8242 2.6475 30 1 2.7100 2.3471 1.9507 31 1 3.0292 2.0894 3.6828 32 1 6.5431 0.7822 3.3951 33 1 5.4081 1.6567 4.4511 34 1 6.0922 0.0995 4.9760 35 1 5.2193 -2.1570 4.4531 36 1 4.0002 -0.4504 -1.3770 37 1 3.4537 1.0572 -2.1826 38 1 5.8501 1.2045 -2.4422 39 1 6.1503 0.4956 -0.8244 40 1 5.3511 3.3081 -1.5643 41 1 6.3301 2.7363 -0.1840 42 1 3.4942 3.3444 -0.2324 43 1 4.4732 2.7725 1.1480 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121280284.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:35 Heat of formation + Delta-G solvation = -77.726817 kcal Electronic energy + Delta-G solvation = -22803.825106 eV Core-core repulsion = 19656.439460 eV Total energy + Delta-G solvation = -3147.385646 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.33613 -37.49315 -36.60765 -35.37780 -33.02598 -30.84015 -29.32997 -28.32482 -26.53570 -26.25978 -24.78576 -24.19812 -22.54698 -20.33274 -20.11355 -18.18011 -16.78152 -16.63936 -15.85819 -15.76217 -15.48488 -15.24852 -14.52362 -14.13772 -13.75985 -13.48885 -13.24788 -13.10658 -12.73107 -12.43899 -12.18843 -11.76296 -11.53345 -11.35426 -11.29316 -11.20930 -11.09717 -10.97249 -10.80021 -10.71256 -10.56514 -10.46949 -10.22416 -10.13957 -10.02512 -9.47943 -8.82944 -8.66782 -8.32778 -7.44370 -6.34781 -4.07968 3.42219 3.46943 3.50434 3.59256 3.79075 4.04016 4.53505 4.61795 4.75250 4.90243 5.12793 5.19987 5.28998 5.40790 5.43082 5.48883 5.53306 5.57280 5.62831 5.74223 5.78008 5.81700 5.84948 5.96135 6.02494 6.04846 6.13566 6.23371 6.40344 6.43873 6.45330 6.55069 6.60017 6.76309 7.12806 7.28313 7.35936 7.70161 8.04806 8.39133 8.57404 8.84289 9.18248 9.64634 11.02770 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.019749 B = 0.006948 C = 0.005969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.483486 B = 4028.875282 C = 4689.461739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.374 6.374 3 C 0.075 3.925 4 C -0.082 4.082 5 C 0.531 3.469 6 O -0.541 6.541 7 N -0.591 5.591 8 C 0.076 3.924 9 C 0.241 3.759 10 H 0.065 0.935 11 C -0.144 4.144 12 C -0.602 4.602 13 H 0.053 0.947 14 C 0.024 3.976 15 N -0.906 5.906 16 Si 1.075 2.925 17 H -0.290 1.290 18 H -0.287 1.287 19 H -0.287 1.287 20 C -0.097 4.097 21 C -0.126 4.126 22 C -0.121 4.121 23 C -0.137 4.137 24 H 0.036 0.964 25 H 0.085 0.915 26 H 0.040 0.960 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.020 0.980 33 H 0.039 0.961 34 H 0.057 0.943 35 H 0.273 0.727 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.790 12.448 -10.878 16.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.292 6.292 3 C -0.002 4.002 4 C -0.085 4.085 5 C 0.317 3.683 6 O -0.418 6.418 7 N -0.322 5.322 8 C -0.067 4.067 9 C 0.140 3.860 10 H 0.082 0.918 11 C -0.203 4.203 12 C -0.641 4.641 13 H 0.071 0.929 14 C -0.181 4.181 15 N -0.541 5.541 16 Si 0.903 3.097 17 H -0.216 1.216 18 H -0.213 1.213 19 H -0.213 1.213 20 C -0.134 4.134 21 C -0.164 4.164 22 C -0.158 4.158 23 C -0.174 4.174 24 H 0.054 0.946 25 H 0.104 0.896 26 H 0.059 0.941 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.039 0.961 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.104 0.896 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.948 10.607 -9.786 14.962 hybrid contribution 0.106 1.504 -1.095 1.863 sum -3.841 12.111 -10.881 16.728 Atomic orbital electron populations 1.22714 0.81445 1.02825 0.99387 1.88071 1.19194 1.26773 1.95186 1.22656 0.91743 0.85600 1.00159 1.21631 0.93974 0.96290 0.96644 1.19838 0.78093 0.87200 0.83184 1.90614 1.48993 1.18831 1.83389 1.48075 1.59628 1.16933 1.07566 1.21966 0.97401 0.84934 1.02437 1.19025 0.91911 0.90536 0.84528 0.91758 1.22171 0.97960 1.00302 0.99822 1.22091 1.10118 1.12337 1.19553 0.92913 1.25784 1.00439 0.91851 1.00066 1.70695 1.14078 1.34641 1.34713 0.83475 0.75015 0.75691 0.75499 1.21646 1.21304 1.21324 1.22422 0.95012 1.02445 0.93569 1.22430 0.97439 0.96136 1.00350 1.22098 0.97758 0.97462 0.98522 1.22767 0.97176 0.94558 1.02883 0.94561 0.89635 0.94132 0.92493 0.92905 0.93535 0.92120 0.90703 0.96119 0.94183 0.92404 0.91570 0.89590 0.91551 0.91809 0.91259 0.91945 0.91888 0.91220 0.88733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.37 -6.69 10.07 -35.23 -0.35 -7.04 16 3 C 0.08 1.12 4.57 37.16 0.17 1.29 16 4 C -0.08 -1.34 0.36 -154.00 -0.05 -1.39 16 5 C 0.53 11.66 5.76 -10.99 -0.06 11.60 16 6 O -0.54 -14.36 15.07 5.55 0.08 -14.28 16 7 N -0.59 -13.03 2.70 -175.26 -0.47 -13.50 16 8 C 0.08 1.31 7.63 59.85 0.46 1.76 16 9 C 0.24 6.24 2.36 -69.08 -0.16 6.08 16 10 H 0.06 1.94 5.44 -51.92 -0.28 1.66 16 11 C -0.14 -3.30 9.25 37.16 0.34 -2.96 16 12 C -0.60 -16.80 8.16 -34.44 -0.28 -17.08 16 13 H 0.05 1.45 6.61 -52.49 -0.35 1.10 16 14 C 0.02 0.70 5.45 -17.82 -0.10 0.60 16 15 N -0.91 -27.86 13.63 55.43 0.76 -27.11 16 16 Si 1.07 25.46 29.91 -169.99 -5.08 20.38 16 17 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 20 C -0.10 -1.48 5.56 -24.55 -0.14 -1.62 16 21 C -0.13 -1.75 6.62 -24.88 -0.16 -1.91 16 22 C -0.12 -1.47 6.80 -25.62 -0.17 -1.64 16 23 C -0.14 -1.77 4.84 -25.61 -0.12 -1.90 16 24 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.81 5.61 -51.93 -0.29 0.52 16 28 H 0.05 0.63 8.03 -51.93 -0.42 0.21 16 29 H 0.05 0.69 6.48 -51.93 -0.34 0.35 16 30 H 0.06 0.89 3.69 -51.93 -0.19 0.70 16 31 H 0.07 1.37 6.60 -51.93 -0.34 1.03 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.04 0.83 7.51 -51.93 -0.39 0.44 16 34 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.27 8.50 6.65 -40.82 -0.27 8.22 16 36 H 0.09 1.57 7.23 -51.93 -0.38 1.20 16 37 H 0.07 0.85 7.98 -51.93 -0.41 0.44 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.07 0.72 7.84 -51.93 -0.41 0.31 16 43 H 0.09 1.30 3.83 -51.93 -0.20 1.10 16 LS Contribution 327.85 15.07 4.94 4.94 Total: -1.00 -34.17 327.85 -6.17 -40.34 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -6.87 Total: 1.88 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: 0.82 Total: -5.62 kcal Atomic # 7 Polarization: -40.89 SS G_CDS: 0.28 Total: -40.60 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.27 Total: -21.32 kcal Atomic # 14 Polarization: 25.46 SS G_CDS: -5.08 Total: 20.38 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.17 -6.17 -40.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121280284.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.384 kcal (2) G-P(sol) polarization free energy of solvation -34.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds