Wall clock time and date at job start Mon Mar 30 2020 00:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 114.00075 * 2 1 4 4 C 1.53003 * 109.46985 * 180.02562 * 3 2 1 5 5 C 1.50696 * 110.43440 * 307.09586 * 4 3 2 6 6 O 1.21287 * 119.99678 * 103.58444 * 5 4 3 7 7 N 1.34779 * 120.00559 * 283.58801 * 5 4 3 8 8 C 1.46500 * 119.99622 * 5.35487 * 7 5 4 9 9 C 1.46497 * 120.00270 * 185.35377 * 7 5 4 10 10 H 1.09008 * 109.46931 * 359.97438 * 9 7 5 11 11 C 1.52999 * 109.47294 * 119.99685 * 9 7 5 12 12 C 1.50700 * 109.47030 * 240.00107 * 9 7 5 13 13 H 1.07996 * 120.00229 * 335.13085 * 12 9 7 14 14 C 1.37879 * 119.99766 * 155.13558 * 12 9 7 15 15 N 1.31510 * 120.00235 * 355.09064 * 14 12 9 16 16 Si 1.86803 * 119.99908 * 175.09688 * 14 12 9 17 17 H 1.48497 * 109.46832 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47335 * 119.99580 * 16 14 12 19 19 H 1.48495 * 109.47145 * 239.99931 * 16 14 12 20 20 C 1.54887 * 110.48740 * 69.64202 * 4 3 2 21 21 C 1.55238 * 102.58758 * 156.67335 * 20 4 3 22 22 C 1.54268 * 104.22985 * 322.08480 * 21 20 4 23 23 C 1.53868 * 106.60145 * 23.61104 * 22 21 20 24 24 H 1.08992 * 109.47328 * 59.99505 * 1 2 3 25 25 H 1.08997 * 109.46765 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46675 * 299.99430 * 1 2 3 27 27 H 1.08999 * 109.46658 * 60.00821 * 3 2 1 28 28 H 1.08998 * 109.47162 * 300.00655 * 3 2 1 29 29 H 1.09007 * 109.46734 * 267.11326 * 8 7 5 30 30 H 1.09000 * 109.47120 * 27.10838 * 8 7 5 31 31 H 1.08996 * 109.47134 * 147.11267 * 8 7 5 32 32 H 1.08996 * 109.46997 * 295.07449 * 11 9 7 33 33 H 1.08999 * 109.46616 * 55.07173 * 11 9 7 34 34 H 1.09001 * 109.47104 * 175.06626 * 11 9 7 35 35 H 0.97001 * 119.99935 * 5.10938 * 15 14 12 36 36 H 1.08994 * 110.75599 * 275.06425 * 20 4 3 37 37 H 1.08999 * 110.75598 * 38.43565 * 20 4 3 38 38 H 1.08997 * 110.47002 * 203.39784 * 21 20 4 39 39 H 1.08998 * 110.46696 * 80.77518 * 21 20 4 40 40 H 1.08993 * 110.03478 * 264.32190 * 22 21 20 41 41 H 1.09005 * 110.03183 * 142.89705 * 22 21 20 42 42 H 1.09003 * 110.03434 * 240.71356 * 23 22 21 43 43 H 1.09005 * 110.03781 * 119.28276 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 3.9932 0.2938 1.1254 6 8 4.3473 -0.8429 0.8937 7 7 4.0089 0.7600 2.3898 8 6 3.4719 2.0903 2.6867 9 6 4.5631 -0.0634 3.4673 10 1 4.9107 -1.0119 3.0577 11 6 5.7360 0.6716 4.1192 12 6 3.4968 -0.3235 4.5000 13 1 2.6697 0.3627 4.6068 14 6 3.5772 -1.4374 5.3085 15 7 4.5299 -2.3230 5.1150 16 14 2.3327 -1.6887 6.6788 17 1 1.3705 -0.5577 6.6871 18 1 1.5999 -2.9608 6.4548 19 1 3.0385 -1.7472 7.9839 20 6 4.0355 0.6389 -1.3612 21 6 5.5018 1.1462 -1.4110 22 6 5.4376 2.5536 -0.7825 23 6 4.1875 2.5780 0.1142 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5137 0.8900 27 1 1.6887 1.8463 0.8901 28 1 1.6885 1.8464 -0.8899 29 1 4.2769 2.8242 2.6475 30 1 2.7100 2.3471 1.9507 31 1 3.0292 2.0894 3.6828 32 1 6.5431 0.7822 3.3951 33 1 5.4081 1.6567 4.4511 34 1 6.0922 0.0995 4.9760 35 1 5.2193 -2.1570 4.4531 36 1 4.0002 -0.4504 -1.3770 37 1 3.4537 1.0572 -2.1826 38 1 5.8501 1.2045 -2.4422 39 1 6.1503 0.4956 -0.8244 40 1 5.3511 3.3081 -1.5643 41 1 6.3301 2.7363 -0.1840 42 1 3.4942 3.3444 -0.2324 43 1 4.4732 2.7725 1.1480 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121280284.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:34 Heat of formation + Delta-G solvation = -101.375553 kcal Electronic energy + Delta-G solvation = -22804.850592 eV Core-core repulsion = 19656.439460 eV Total energy + Delta-G solvation = -3148.411132 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.77992 -38.90466 -37.88697 -37.22735 -34.99310 -32.29257 -30.91256 -29.57015 -27.75847 -27.60622 -26.92170 -25.37009 -24.21189 -21.86125 -21.37315 -19.73842 -18.78189 -17.99486 -17.31219 -16.97194 -16.96619 -16.43102 -15.95988 -15.61589 -15.57374 -15.02405 -14.80046 -14.51454 -14.22444 -13.81274 -13.53022 -13.43515 -13.26153 -13.03622 -12.87080 -12.61796 -12.43783 -12.40268 -12.13355 -12.06223 -11.93504 -11.92755 -11.76366 -11.63206 -11.25273 -10.90667 -10.67232 -10.54016 -10.29969 -9.27098 -8.63944 -6.38217 1.49505 1.59769 1.74410 1.86275 2.31668 2.56489 2.79612 3.18726 3.42852 3.63432 3.76322 3.95828 4.06646 4.22062 4.38173 4.43727 4.46921 4.49532 4.51834 4.55875 4.57795 4.61097 4.66154 4.73196 4.76988 4.79338 4.81258 4.93586 5.02153 5.05811 5.07588 5.18958 5.25353 5.29137 5.37563 5.49391 5.78962 5.91186 6.21296 6.25835 6.50730 6.83291 7.40493 7.51947 8.71825 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.019749 B = 0.006948 C = 0.005969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.483486 B = 4028.875282 C = 4689.461739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.422 6.422 3 C 0.071 3.929 4 C -0.080 4.080 5 C 0.518 3.482 6 O -0.605 6.605 7 N -0.598 5.598 8 C 0.071 3.929 9 C 0.239 3.761 10 H 0.008 0.992 11 C -0.128 4.128 12 C -0.604 4.604 13 H 0.059 0.941 14 C -0.033 4.033 15 N -0.937 5.937 16 Si 1.122 2.878 17 H -0.264 1.264 18 H -0.289 1.289 19 H -0.275 1.275 20 C -0.096 4.096 21 C -0.127 4.127 22 C -0.116 4.116 23 C -0.132 4.132 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.045 0.955 27 H 0.065 0.935 28 H 0.097 0.903 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.062 0.938 32 H 0.031 0.969 33 H 0.066 0.934 34 H 0.035 0.965 35 H 0.254 0.746 36 H 0.041 0.959 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.027 0.973 40 H 0.099 0.901 41 H 0.058 0.942 42 H 0.113 0.887 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.579 16.414 -11.825 20.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.342 6.342 3 C -0.005 4.005 4 C -0.083 4.083 5 C 0.308 3.692 6 O -0.487 6.487 7 N -0.328 5.328 8 C -0.070 4.070 9 C 0.137 3.863 10 H 0.026 0.974 11 C -0.186 4.186 12 C -0.643 4.643 13 H 0.077 0.923 14 C -0.231 4.231 15 N -0.574 5.574 16 Si 0.944 3.056 17 H -0.188 1.188 18 H -0.215 1.215 19 H -0.201 1.201 20 C -0.134 4.134 21 C -0.165 4.165 22 C -0.153 4.153 23 C -0.169 4.169 24 H 0.087 0.913 25 H 0.098 0.902 26 H 0.063 0.937 27 H 0.083 0.917 28 H 0.114 0.886 29 H 0.097 0.903 30 H 0.110 0.890 31 H 0.081 0.919 32 H 0.050 0.950 33 H 0.085 0.915 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.121 0.879 38 H 0.107 0.893 39 H 0.046 0.954 40 H 0.117 0.883 41 H 0.077 0.923 42 H 0.132 0.868 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.749 14.644 -10.741 19.049 hybrid contribution 0.668 0.251 -0.884 1.136 sum -5.081 14.895 -11.625 19.565 Atomic orbital electron populations 1.22881 0.79506 1.03232 1.01180 1.88031 1.21593 1.28957 1.95572 1.22869 0.90160 0.84940 1.02508 1.21725 0.95562 0.96974 0.94021 1.21008 0.76716 0.87204 0.84311 1.90580 1.51656 1.22049 1.84411 1.48085 1.59544 1.18296 1.06919 1.22278 0.99238 0.82844 1.02687 1.18728 0.92675 0.89744 0.85202 0.97387 1.21931 0.97077 1.00687 0.98934 1.22426 1.10375 1.12105 1.19352 0.92320 1.27353 1.01494 0.91858 1.02394 1.70832 1.15152 1.36018 1.35403 0.82893 0.73326 0.76342 0.73061 1.18826 1.21518 1.20066 1.22434 0.96585 0.99943 0.94425 1.22426 0.95826 0.96795 1.01426 1.22118 0.97307 0.96653 0.99249 1.22823 0.98114 0.93008 1.02943 0.91259 0.90165 0.93660 0.91744 0.88559 0.90329 0.89050 0.91913 0.95040 0.91499 0.94572 0.93571 0.94039 0.87932 0.89268 0.95413 0.88270 0.92324 0.86826 0.89477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 11.01 113.37 1.25 1.94 16 2 O -0.42 -14.70 10.07 -148.98 -1.50 -16.20 16 3 C 0.07 1.89 4.57 71.98 0.33 2.22 16 4 C -0.08 -2.45 0.36 -51.85 -0.02 -2.46 16 5 C 0.52 23.36 5.76 87.66 0.51 23.86 16 6 O -0.61 -34.62 15.07 -3.05 -0.05 -34.66 16 7 N -0.60 -26.54 2.70 -826.78 -2.23 -28.77 16 8 C 0.07 2.26 7.63 127.77 0.98 3.23 16 9 C 0.24 12.88 2.36 44.25 0.10 12.99 16 10 H 0.01 0.53 5.44 -2.38 -0.01 0.52 16 11 C -0.13 -5.96 9.25 71.98 0.67 -5.29 16 12 C -0.60 -34.37 8.16 25.60 0.21 -34.17 16 13 H 0.06 3.20 6.61 -2.91 -0.02 3.18 16 14 C -0.03 -1.94 5.45 84.66 0.46 -1.47 16 15 N -0.94 -60.47 13.63 21.45 0.29 -60.18 16 16 Si 1.12 51.46 29.91 68.60 2.05 53.51 16 17 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 18 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 19 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 20 C -0.10 -2.84 5.56 32.01 0.18 -2.67 16 21 C -0.13 -3.38 6.62 31.79 0.21 -3.17 16 22 C -0.12 -2.38 6.80 31.32 0.21 -2.16 16 23 C -0.13 -2.84 4.84 31.32 0.15 -2.69 16 24 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.06 1.58 5.61 -2.39 -0.01 1.56 16 28 H 0.10 1.74 8.03 -2.39 -0.02 1.72 16 29 H 0.08 2.03 6.48 -2.38 -0.02 2.01 16 30 H 0.09 2.33 3.69 -2.39 -0.01 2.32 16 31 H 0.06 2.16 6.60 -2.39 -0.02 2.14 16 32 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.07 2.71 7.51 -2.39 -0.02 2.69 16 34 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.25 17.02 6.65 -92.71 -0.62 16.40 16 36 H 0.04 1.59 7.23 -2.39 -0.02 1.57 16 37 H 0.10 2.26 7.98 -2.39 -0.02 2.24 16 38 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 42 H 0.11 1.53 7.84 -2.39 -0.02 1.51 16 43 H 0.09 2.03 3.83 -2.38 -0.01 2.02 16 Total: -1.00 -82.48 327.85 4.94 -77.54 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 1.14 Total: 18.60 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: 5.23 Total: -9.83 kcal Atomic # 7 Polarization: -87.01 SS G_CDS: -1.94 Total: -88.95 kcal Atomic # 8 Polarization: -49.32 SS G_CDS: -1.55 Total: -50.86 kcal Atomic # 14 Polarization: 51.46 SS G_CDS: 2.05 Total: 53.51 kcal Total: -82.48 4.94 -77.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121280284.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.836 kcal (2) G-P(sol) polarization free energy of solvation -82.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds