Wall clock time and date at job start Mon Mar 30 2020 01:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47408 * 2 1 4 4 C 1.36935 * 120.00701 * 269.63383 * 3 2 1 5 5 H 1.08001 * 119.99882 * 325.93431 * 4 3 2 6 6 C 1.38814 * 120.00029 * 145.92698 * 4 3 2 7 7 N 1.31613 * 120.00227 * 336.95771 * 6 4 3 8 8 Si 1.86797 * 119.99579 * 156.96243 * 6 4 3 9 9 H 1.48491 * 109.47781 * 90.00026 * 8 6 4 10 10 H 1.48508 * 109.46946 * 210.00053 * 8 6 4 11 11 H 1.48501 * 109.47140 * 329.99543 * 8 6 4 12 12 C 1.46502 * 119.99665 * 89.63753 * 3 2 1 13 13 C 1.52997 * 109.47347 * 89.99742 * 12 3 2 14 14 H 1.08995 * 110.78110 * 308.23821 * 13 12 3 15 15 C 1.54482 * 110.72182 * 184.99829 * 13 12 3 16 16 O 1.43963 * 105.16969 * 219.94924 * 15 13 12 17 17 C 1.43453 * 107.00883 * 358.56104 * 16 15 13 18 18 C 1.52665 * 110.08342 * 265.56995 * 17 16 15 19 19 C 1.53063 * 109.48362 * 297.41757 * 18 17 16 20 20 C 1.52998 * 109.44452 * 300.59767 * 19 18 17 21 21 C 1.52999 * 109.54789 * 60.29106 * 20 19 18 22 22 C 1.52657 * 110.07592 * 143.68694 * 17 16 15 23 23 O 1.44028 * 106.63277 * 24.62201 * 17 16 15 24 24 H 1.08993 * 109.47299 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46504 * 299.99638 * 1 2 3 26 26 H 1.09002 * 109.46927 * 59.99297 * 1 2 3 27 27 H 1.09001 * 109.46504 * 240.00362 * 2 1 3 28 28 H 1.08996 * 109.47277 * 120.00461 * 2 1 3 29 29 H 0.96997 * 120.00014 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.46957 * 329.99861 * 12 3 2 31 31 H 1.09001 * 109.47061 * 209.99851 * 12 3 2 32 32 H 1.08996 * 110.31958 * 100.99686 * 15 13 12 33 33 H 1.08999 * 110.31888 * 338.89827 * 15 13 12 34 34 H 1.08999 * 109.46924 * 57.41948 * 18 17 16 35 35 H 1.08994 * 109.46799 * 177.41497 * 18 17 16 36 36 H 1.08999 * 109.47664 * 180.60873 * 19 18 17 37 37 H 1.08997 * 109.47993 * 60.58902 * 19 18 17 38 38 H 1.09006 * 109.45589 * 300.27265 * 20 19 18 39 39 H 1.08995 * 109.44934 * 180.31072 * 20 19 18 40 40 H 1.08995 * 109.48287 * 179.71728 * 21 20 19 41 41 H 1.09003 * 109.47853 * 59.68841 * 21 20 19 42 42 H 1.09000 * 109.46871 * 182.58219 * 22 17 16 43 43 H 1.08998 * 109.46529 * 302.57003 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2539 2.0243 -1.1858 5 1 2.6193 1.4698 -2.0375 6 6 2.0227 3.3888 -1.2931 7 7 1.1843 3.9811 -0.4695 8 14 2.9016 4.3844 -2.6068 9 1 2.0838 4.4002 -3.8461 10 1 3.0975 5.7755 -2.1253 11 1 4.2225 3.7691 -2.8932 12 6 2.2550 2.0744 1.2688 13 6 3.6973 1.8348 1.7196 14 1 3.9305 0.7701 1.7201 15 6 3.9426 2.4486 3.1159 16 8 5.2587 3.0280 3.0467 17 6 5.7703 2.7521 1.7352 18 6 6.6148 1.4805 1.7587 19 6 7.8219 1.6862 2.6771 20 6 8.6586 2.8597 2.1634 21 6 7.8078 4.1313 2.1577 22 6 6.6008 3.9324 1.2377 23 8 4.6280 2.5633 0.8785 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5140 -0.8899 27 1 1.8932 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.0230 4.9346 -0.5443 30 1 1.5696 1.6918 2.0251 31 1 2.0889 3.1433 1.1352 32 1 3.9101 1.6733 3.8812 33 1 3.2006 3.2189 3.3264 34 1 6.0127 0.6513 2.1303 35 1 6.9602 1.2551 0.7498 36 1 8.4306 0.7821 2.6853 37 1 7.4767 1.9013 3.6883 38 1 8.9995 2.6464 1.1502 39 1 9.5211 3.0027 2.8141 40 1 8.4063 4.9675 1.7964 41 1 7.4624 4.3420 3.1699 42 1 6.9461 3.7317 0.2235 43 1 5.9887 4.8343 1.2412 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167268209.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:14 Heat of formation + Delta-G solvation = -102.967168 kcal Electronic energy + Delta-G solvation = -22709.131420 eV Core-core repulsion = 19560.651270 eV Total energy + Delta-G solvation = -3148.480150 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.78473 -38.28355 -37.32934 -35.68927 -33.73415 -32.57215 -31.81551 -30.39163 -29.33998 -26.95996 -25.21281 -23.89398 -22.97619 -22.93641 -21.61108 -20.48663 -18.82073 -17.60311 -17.54255 -16.90391 -16.40311 -16.15541 -15.77331 -15.58953 -15.34306 -14.77793 -14.55054 -14.40327 -14.06341 -13.85793 -13.60275 -13.26586 -13.15089 -13.12688 -12.94359 -12.89015 -12.62983 -12.39766 -12.27364 -12.15054 -11.88679 -11.79341 -11.63209 -11.50748 -11.46852 -11.29671 -10.96456 -10.48685 -10.29242 -8.58146 -7.79948 -5.34272 1.40684 1.45194 1.54419 2.53154 2.66258 3.08432 3.28615 3.52905 3.69089 3.73057 3.99009 4.03445 4.11613 4.20697 4.28465 4.35823 4.44629 4.46948 4.52848 4.57276 4.62758 4.74546 4.79002 4.81757 4.88598 4.93740 5.00232 5.02105 5.07865 5.19697 5.19871 5.24097 5.26154 5.30175 5.42209 5.51775 5.56714 5.68056 5.81293 6.28486 6.50678 7.20190 7.91288 8.38912 9.17479 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.018713 B = 0.007341 C = 0.006025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.940199 B = 3813.388163 C = 4646.484011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.135 3.865 3 N -0.594 5.594 4 C -0.245 4.245 5 H 0.048 0.952 6 C -0.026 4.026 7 N -0.915 5.915 8 Si 0.942 3.058 9 H -0.285 1.285 10 H -0.295 1.295 11 H -0.279 1.279 12 C 0.148 3.852 13 C 0.040 3.960 14 H 0.070 0.930 15 C 0.028 3.972 16 O -0.386 6.386 17 C 0.240 3.760 18 C -0.141 4.141 19 C -0.107 4.107 20 C -0.117 4.117 21 C -0.106 4.106 22 C -0.112 4.112 23 O -0.372 6.372 24 H 0.068 0.932 25 H 0.035 0.965 26 H 0.024 0.976 27 H 0.042 0.958 28 H 0.058 0.942 29 H 0.247 0.753 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.104 0.896 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.063 0.937 42 H 0.074 0.926 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.596 -5.038 8.484 15.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.010 3.990 3 N -0.315 5.315 4 C -0.375 4.375 5 H 0.066 0.934 6 C -0.223 4.223 7 N -0.560 5.560 8 Si 0.771 3.229 9 H -0.212 1.212 10 H -0.221 1.221 11 H -0.204 1.204 12 C 0.021 3.979 13 C -0.019 4.019 14 H 0.088 0.912 15 C -0.049 4.049 16 O -0.308 6.308 17 C 0.163 3.837 18 C -0.180 4.180 19 C -0.144 4.144 20 C -0.155 4.155 21 C -0.143 4.143 22 C -0.150 4.150 23 O -0.293 6.293 24 H 0.087 0.913 25 H 0.054 0.946 26 H 0.044 0.956 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.122 0.878 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.104 0.896 40 H 0.099 0.901 41 H 0.082 0.918 42 H 0.092 0.908 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.617 -4.718 8.400 15.093 hybrid contribution -0.238 0.677 -0.906 1.156 sum 11.380 -4.041 7.494 14.212 Atomic orbital electron populations 1.22132 0.98700 1.00177 1.00019 1.21057 0.92723 0.85836 0.99397 1.43968 1.74758 1.10999 1.01776 1.19008 1.35853 0.91570 0.91103 0.93441 1.25434 0.97858 0.99169 0.99810 1.70045 1.34709 1.09790 1.41494 0.85681 0.79348 0.78189 0.79675 1.21164 1.22136 1.20418 1.20933 0.89312 1.01058 0.86623 1.24620 0.93992 0.95433 0.87905 0.91202 1.24016 0.84645 0.98574 0.97672 1.88737 1.30465 1.78737 1.32858 1.23580 0.87663 0.95494 0.76941 1.22179 0.98047 0.96142 1.01583 1.21431 0.94984 0.99378 0.98610 1.21573 0.98097 0.93769 1.02037 1.21447 0.94640 0.99074 0.99181 1.21568 0.97130 0.96004 1.00312 1.89690 1.27188 1.76037 1.36382 0.91334 0.94576 0.95628 0.93964 0.92365 0.94341 0.92704 0.90762 0.87831 0.90825 0.91837 0.90981 0.89955 0.91723 0.91626 0.89594 0.90080 0.91776 0.90756 0.92962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.77 10.24 71.98 0.74 -5.04 16 2 C 0.13 5.49 6.39 86.38 0.55 6.04 16 3 N -0.59 -29.37 2.45 -702.01 -1.72 -31.09 16 4 C -0.24 -13.71 9.35 84.03 0.79 -12.92 16 5 H 0.05 2.71 7.93 -2.91 -0.02 2.68 16 6 C -0.03 -1.49 4.95 84.86 0.42 -1.07 16 7 N -0.92 -54.36 11.33 21.65 0.25 -54.12 16 8 Si 0.94 47.27 29.61 68.60 2.03 49.30 16 9 H -0.28 -13.89 7.11 99.48 0.71 -13.18 16 10 H -0.29 -14.89 7.11 99.48 0.71 -14.18 16 11 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16 12 C 0.15 6.83 4.93 86.38 0.43 7.26 16 13 C 0.04 1.60 3.20 31.10 0.10 1.70 16 14 H 0.07 2.62 7.41 -2.39 -0.02 2.60 16 15 C 0.03 0.94 7.63 72.49 0.55 1.50 16 16 O -0.39 -13.58 9.88 -125.99 -1.24 -14.82 16 17 C 0.24 8.53 1.05 30.37 0.03 8.56 16 18 C -0.14 -4.12 5.10 30.50 0.16 -3.96 16 19 C -0.11 -2.37 5.81 30.61 0.18 -2.19 16 20 C -0.12 -2.38 5.91 30.59 0.18 -2.20 16 21 C -0.11 -2.58 5.81 30.62 0.18 -2.40 16 22 C -0.11 -3.69 5.35 30.50 0.16 -3.52 16 23 O -0.37 -16.80 10.80 -125.99 -1.36 -18.16 16 24 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 25 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.04 1.70 8.04 -2.39 -0.02 1.68 16 28 H 0.06 2.03 8.07 -2.39 -0.02 2.01 16 29 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 30 H 0.05 2.30 8.07 -2.39 -0.02 2.28 16 31 H 0.07 4.09 5.32 -2.39 -0.01 4.08 16 32 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 33 H 0.07 2.56 7.84 -2.39 -0.02 2.54 16 34 H 0.06 1.84 7.09 -2.39 -0.02 1.83 16 35 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.06 1.50 7.79 -2.39 -0.02 1.49 16 38 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 39 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.06 1.64 7.79 -2.39 -0.02 1.62 16 42 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 43 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -65.20 334.33 3.36 -61.84 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 0.95 Total: 15.30 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: 4.46 Total: -8.25 kcal Atomic # 7 Polarization: -83.73 SS G_CDS: -1.48 Total: -85.21 kcal Atomic # 8 Polarization: -30.37 SS G_CDS: -2.61 Total: -32.98 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.30 kcal Total: -65.20 3.36 -61.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167268209.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.131 kcal (2) G-P(sol) polarization free energy of solvation -65.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds