Wall clock time and date at job start Mon Mar 30 2020 01:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46508 * 109.47091 * 2 1 4 4 C 1.36930 * 120.00148 * 275.30032 * 3 2 1 5 5 H 1.07997 * 120.00126 * 37.62548 * 4 3 2 6 6 C 1.38814 * 119.99877 * 217.62654 * 4 3 2 7 7 N 1.31611 * 119.99998 * 21.43440 * 6 4 3 8 8 Si 1.86798 * 119.99780 * 201.42955 * 6 4 3 9 9 H 1.48501 * 109.47453 * 60.00388 * 8 6 4 10 10 H 1.48504 * 109.46811 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47657 * 300.00034 * 8 6 4 12 12 C 1.46502 * 119.99796 * 95.29426 * 3 2 1 13 13 C 1.52999 * 109.47297 * 270.00504 * 12 3 2 14 14 H 1.08996 * 110.63933 * 56.86125 * 13 12 3 15 15 C 1.54483 * 110.71581 * 179.97438 * 13 12 3 16 16 O 1.43967 * 105.07249 * 140.28673 * 15 13 12 17 17 C 1.43449 * 107.01807 * 1.37632 * 16 15 13 18 18 C 1.52653 * 110.08574 * 216.33781 * 17 16 15 19 19 C 1.53069 * 109.48669 * 297.40270 * 18 17 16 20 20 C 1.52997 * 109.43532 * 300.58753 * 19 18 17 21 21 C 1.53003 * 109.54403 * 60.30148 * 20 19 18 22 22 C 1.52659 * 110.08416 * 94.44472 * 17 16 15 23 23 O 1.44035 * 106.62749 * 335.39186 * 17 16 15 24 24 H 1.08993 * 109.46682 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46859 * 299.99891 * 1 2 3 26 26 H 1.09001 * 109.46816 * 59.99520 * 1 2 3 27 27 H 1.08995 * 109.47106 * 240.00589 * 2 1 3 28 28 H 1.08996 * 109.47105 * 120.00076 * 2 1 3 29 29 H 0.97005 * 120.00084 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.46743 * 149.99726 * 12 3 2 31 31 H 1.09003 * 109.46647 * 30.00421 * 12 3 2 32 32 H 1.09000 * 110.32058 * 21.38896 * 15 13 12 33 33 H 1.08996 * 110.40575 * 259.23244 * 15 13 12 34 34 H 1.08999 * 109.46788 * 57.40328 * 18 17 16 35 35 H 1.08997 * 109.47456 * 177.39514 * 18 17 16 36 36 H 1.09002 * 109.47663 * 180.59537 * 19 18 17 37 37 H 1.09003 * 109.48306 * 60.58372 * 19 18 17 38 38 H 1.08991 * 109.45798 * 300.27535 * 20 19 18 39 39 H 1.09001 * 109.45688 * 180.31927 * 20 19 18 40 40 H 1.09000 * 109.47541 * 179.71129 * 21 20 19 41 41 H 1.08992 * 109.48267 * 59.69475 * 21 20 19 42 42 H 1.08997 * 109.46722 * 182.59928 * 22 17 16 43 43 H 1.08998 * 109.46710 * 302.59405 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1434 2.0633 -1.1808 5 1 1.4105 1.9284 -1.9625 6 6 3.2120 2.9282 -1.3730 7 7 4.3036 2.7964 -0.6496 8 14 3.1008 4.2789 -2.6585 9 1 1.9650 5.1789 -2.3340 10 1 4.3643 5.0592 -2.6671 11 1 2.8850 3.6724 -3.9967 12 6 2.3730 2.0328 1.2634 13 6 1.1422 2.7383 1.8364 14 1 0.3220 2.0328 1.9692 15 6 1.4843 3.4358 3.1716 16 8 0.7759 4.6885 3.1320 17 6 0.0469 4.7196 1.8969 18 6 0.0309 6.1382 1.3332 19 6 -0.6982 7.0666 2.3077 20 6 -2.1306 6.5687 2.5100 21 6 -2.1034 5.1527 3.0888 22 6 -1.3784 4.2190 2.1166 23 8 0.7380 3.8414 0.9882 24 1 -0.3632 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 5.0502 3.4010 -0.7837 30 1 3.1615 2.7642 1.0861 31 1 2.7251 1.2834 1.9723 32 1 2.5579 3.6102 3.2434 33 1 1.1421 2.8339 4.0134 34 1 1.0547 6.4865 1.1968 35 1 -0.4850 6.1419 0.3731 36 1 -0.7188 8.0774 1.9002 37 1 -0.1764 7.0713 3.2647 38 1 -2.6505 6.5596 1.5521 39 1 -2.6519 7.2329 3.1995 40 1 -3.1244 4.8011 3.2373 41 1 -1.5792 5.1606 4.0444 42 1 -1.9086 4.2032 1.1644 43 1 -1.3496 3.2121 2.5331 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167268210.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:17 Heat of formation + Delta-G solvation = -86.632525 kcal Electronic energy + Delta-G solvation = -22884.888322 eV Core-core repulsion = 19737.116496 eV Total energy + Delta-G solvation = -3147.771826 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.37296 -36.89656 -35.70509 -34.13473 -31.77868 -31.07051 -30.60515 -28.83093 -27.86178 -25.16985 -23.53333 -22.69011 -21.79237 -21.05737 -20.09460 -19.26004 -16.92410 -16.27125 -15.90633 -15.39807 -14.85421 -14.58755 -14.33561 -13.83126 -13.62442 -13.46817 -13.24503 -12.84160 -12.53027 -12.36336 -12.15999 -12.09399 -11.84557 -11.65680 -11.19619 -11.05831 -11.00100 -10.94077 -10.63073 -10.52342 -10.48584 -10.39541 -10.23590 -10.06276 -9.88788 -9.60365 -9.39500 -8.89576 -8.36365 -6.50897 -5.70381 -3.26998 3.45464 3.50384 3.56769 4.07604 4.46849 4.58742 4.84667 4.88100 5.06736 5.13445 5.33279 5.44329 5.48668 5.53575 5.56265 5.63125 5.67271 5.75188 5.83208 5.86440 6.01851 6.02433 6.10181 6.17911 6.18363 6.29726 6.30229 6.35532 6.38557 6.41298 6.54003 6.57697 6.60689 6.66989 6.86410 6.91927 7.15985 7.58706 7.78584 7.91948 8.60688 9.25952 9.89887 10.45878 11.31300 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.017667 B = 0.007768 C = 0.006475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.451931 B = 3603.885991 C = 4323.601330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.139 3.861 3 N -0.577 5.577 4 C -0.244 4.244 5 H 0.056 0.944 6 C 0.019 3.981 7 N -0.893 5.893 8 Si 0.895 3.105 9 H -0.280 1.280 10 H -0.292 1.292 11 H -0.284 1.284 12 C 0.151 3.849 13 C 0.032 3.968 14 H 0.061 0.939 15 C 0.022 3.978 16 O -0.382 6.382 17 C 0.248 3.752 18 C -0.107 4.107 19 C -0.113 4.113 20 C -0.120 4.120 21 C -0.112 4.112 22 C -0.146 4.146 23 O -0.327 6.327 24 H 0.035 0.965 25 H 0.040 0.960 26 H 0.050 0.950 27 H 0.045 0.955 28 H 0.033 0.967 29 H 0.253 0.747 30 H 0.105 0.895 31 H 0.041 0.959 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.887 3.350 8.180 13.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.013 3.987 3 N -0.297 5.297 4 C -0.374 4.374 5 H 0.073 0.927 6 C -0.180 4.180 7 N -0.536 5.536 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.219 1.219 11 H -0.210 1.210 12 C 0.023 3.977 13 C -0.028 4.028 14 H 0.079 0.921 15 C -0.055 4.055 16 O -0.303 6.303 17 C 0.170 3.830 18 C -0.144 4.144 19 C -0.150 4.150 20 C -0.157 4.157 21 C -0.149 4.149 22 C -0.184 4.184 23 O -0.246 6.246 24 H 0.054 0.946 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.122 0.878 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.662 3.606 8.056 13.087 hybrid contribution -0.218 0.520 -0.527 0.772 sum -9.880 4.126 7.529 13.090 Atomic orbital electron populations 1.22370 1.00173 0.98773 1.01150 1.20880 0.91684 0.87329 0.98806 1.43630 1.75699 1.07974 1.02358 1.18787 1.04135 1.20895 0.93581 0.92675 1.25042 0.94144 1.00825 0.98012 1.69955 1.03252 1.37519 1.42876 0.86500 0.76910 0.82819 0.81310 1.20594 1.21855 1.21048 1.21036 0.93535 0.96546 0.86563 1.24862 1.00687 0.89722 0.87569 0.92099 1.24027 0.97963 0.84998 0.98532 1.88756 1.63921 1.38041 1.39632 1.23240 0.89232 0.92139 0.78368 1.21470 1.02121 0.92063 0.98792 1.21466 0.95457 0.98089 1.00033 1.21556 0.96937 0.96415 1.00824 1.21429 0.99629 0.94719 0.99146 1.22211 0.96060 0.99497 1.00599 1.89726 1.73286 1.31697 1.29881 0.94610 0.94116 0.93122 0.93633 0.94881 0.93676 0.87752 0.94124 0.90154 0.91338 0.90655 0.90437 0.91901 0.91223 0.92111 0.92174 0.92262 0.91391 0.90596 0.91711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 10.21 37.16 0.38 -2.66 16 2 C 0.14 2.93 6.44 -4.03 -0.03 2.91 16 3 N -0.58 -14.27 2.43 -173.23 -0.42 -14.69 16 4 C -0.24 -6.75 9.11 -15.06 -0.14 -6.89 16 5 H 0.06 1.55 7.92 -52.49 -0.42 1.14 16 6 C 0.02 0.54 4.95 -17.43 -0.09 0.46 16 7 N -0.89 -25.90 11.48 55.49 0.64 -25.26 16 8 Si 0.89 22.46 29.60 -169.99 -5.03 17.42 16 9 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 10 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 11 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 12 C 0.15 3.47 4.99 -4.04 -0.02 3.45 16 13 C 0.03 0.64 3.18 -25.95 -0.08 0.56 16 14 H 0.06 1.18 5.84 -51.93 -0.30 0.88 16 15 C 0.02 0.39 7.64 37.94 0.29 0.68 16 16 O -0.38 -6.95 9.88 -59.27 -0.59 -7.53 16 17 C 0.25 4.49 1.05 -27.08 -0.03 4.46 16 18 C -0.11 -1.78 5.35 -26.87 -0.14 -1.92 16 19 C -0.11 -1.50 5.81 -26.70 -0.16 -1.65 16 20 C -0.12 -1.41 5.91 -26.73 -0.16 -1.57 16 21 C -0.11 -1.42 5.81 -26.70 -0.16 -1.58 16 22 C -0.15 -2.25 5.10 -26.87 -0.14 -2.39 16 23 O -0.33 -7.30 10.59 -59.27 -0.63 -7.92 16 24 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.04 0.73 6.58 -51.93 -0.34 0.39 16 26 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 28 H 0.03 0.64 7.83 -51.93 -0.41 0.23 16 29 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.10 2.78 5.52 -51.93 -0.29 2.49 16 31 H 0.04 0.86 7.86 -51.93 -0.41 0.45 16 32 H 0.08 1.42 7.85 -51.93 -0.41 1.01 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.96 7.80 -51.93 -0.40 0.56 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.90 7.79 -51.93 -0.40 0.50 16 42 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.06 1.01 7.08 -51.93 -0.37 0.64 16 LS Contribution 330.72 15.07 4.98 4.98 Total: -1.00 -29.83 330.72 -9.03 -38.86 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -7.53 Total: 0.28 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: -0.46 Total: -6.14 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 0.22 Total: -39.96 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -1.21 Total: -15.46 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.03 Total: 17.42 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.83 -9.03 -38.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167268210.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.771 kcal (2) G-P(sol) polarization free energy of solvation -29.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds