Wall clock time and date at job start Mon Mar 30 2020 01:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46508 * 109.47091 * 2 1 4 4 C 1.36930 * 120.00148 * 275.30032 * 3 2 1 5 5 H 1.07997 * 120.00126 * 37.62548 * 4 3 2 6 6 C 1.38814 * 119.99877 * 217.62654 * 4 3 2 7 7 N 1.31611 * 119.99998 * 21.43440 * 6 4 3 8 8 Si 1.86798 * 119.99780 * 201.42955 * 6 4 3 9 9 H 1.48501 * 109.47453 * 60.00388 * 8 6 4 10 10 H 1.48504 * 109.46811 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47657 * 300.00034 * 8 6 4 12 12 C 1.46502 * 119.99796 * 95.29426 * 3 2 1 13 13 C 1.52999 * 109.47297 * 270.00504 * 12 3 2 14 14 H 1.08996 * 110.63933 * 56.86125 * 13 12 3 15 15 C 1.54483 * 110.71581 * 179.97438 * 13 12 3 16 16 O 1.43967 * 105.07249 * 140.28673 * 15 13 12 17 17 C 1.43449 * 107.01807 * 1.37632 * 16 15 13 18 18 C 1.52653 * 110.08574 * 216.33781 * 17 16 15 19 19 C 1.53069 * 109.48669 * 297.40270 * 18 17 16 20 20 C 1.52997 * 109.43532 * 300.58753 * 19 18 17 21 21 C 1.53003 * 109.54403 * 60.30148 * 20 19 18 22 22 C 1.52659 * 110.08416 * 94.44472 * 17 16 15 23 23 O 1.44035 * 106.62749 * 335.39186 * 17 16 15 24 24 H 1.08993 * 109.46682 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46859 * 299.99891 * 1 2 3 26 26 H 1.09001 * 109.46816 * 59.99520 * 1 2 3 27 27 H 1.08995 * 109.47106 * 240.00589 * 2 1 3 28 28 H 1.08996 * 109.47105 * 120.00076 * 2 1 3 29 29 H 0.97005 * 120.00084 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.46743 * 149.99726 * 12 3 2 31 31 H 1.09003 * 109.46647 * 30.00421 * 12 3 2 32 32 H 1.09000 * 110.32058 * 21.38896 * 15 13 12 33 33 H 1.08996 * 110.40575 * 259.23244 * 15 13 12 34 34 H 1.08999 * 109.46788 * 57.40328 * 18 17 16 35 35 H 1.08997 * 109.47456 * 177.39514 * 18 17 16 36 36 H 1.09002 * 109.47663 * 180.59537 * 19 18 17 37 37 H 1.09003 * 109.48306 * 60.58372 * 19 18 17 38 38 H 1.08991 * 109.45798 * 300.27535 * 20 19 18 39 39 H 1.09001 * 109.45688 * 180.31927 * 20 19 18 40 40 H 1.09000 * 109.47541 * 179.71129 * 21 20 19 41 41 H 1.08992 * 109.48267 * 59.69475 * 21 20 19 42 42 H 1.08997 * 109.46722 * 182.59928 * 22 17 16 43 43 H 1.08998 * 109.46710 * 302.59405 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1434 2.0633 -1.1808 5 1 1.4105 1.9284 -1.9625 6 6 3.2120 2.9282 -1.3730 7 7 4.3036 2.7964 -0.6496 8 14 3.1008 4.2789 -2.6585 9 1 1.9650 5.1789 -2.3340 10 1 4.3643 5.0592 -2.6671 11 1 2.8850 3.6724 -3.9967 12 6 2.3730 2.0328 1.2634 13 6 1.1422 2.7383 1.8364 14 1 0.3220 2.0328 1.9692 15 6 1.4843 3.4358 3.1716 16 8 0.7759 4.6885 3.1320 17 6 0.0469 4.7196 1.8969 18 6 0.0309 6.1382 1.3332 19 6 -0.6982 7.0666 2.3077 20 6 -2.1306 6.5687 2.5100 21 6 -2.1034 5.1527 3.0888 22 6 -1.3784 4.2190 2.1166 23 8 0.7380 3.8414 0.9882 24 1 -0.3632 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 5.0502 3.4010 -0.7837 30 1 3.1615 2.7642 1.0861 31 1 2.7251 1.2834 1.9723 32 1 2.5579 3.6102 3.2434 33 1 1.1421 2.8339 4.0134 34 1 1.0547 6.4865 1.1968 35 1 -0.4850 6.1419 0.3731 36 1 -0.7188 8.0774 1.9002 37 1 -0.1764 7.0713 3.2647 38 1 -2.6505 6.5596 1.5521 39 1 -2.6519 7.2329 3.1995 40 1 -3.1244 4.8011 3.2373 41 1 -1.5792 5.1606 4.0444 42 1 -1.9086 4.2032 1.1644 43 1 -1.3496 3.2121 2.5331 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167268210.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:16 Heat of formation + Delta-G solvation = -103.304461 kcal Electronic energy + Delta-G solvation = -22885.611272 eV Core-core repulsion = 19737.116496 eV Total energy + Delta-G solvation = -3148.494776 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.79853 -38.30074 -37.31775 -35.68024 -33.78624 -32.52310 -31.82312 -30.41409 -29.36123 -26.98159 -25.27928 -23.87398 -22.98278 -22.62504 -21.90260 -20.49083 -18.80217 -17.63818 -17.56249 -16.99651 -16.42018 -16.14738 -15.61452 -15.59178 -15.28984 -14.76807 -14.52604 -14.41382 -14.10153 -13.86398 -13.55487 -13.42864 -13.19086 -13.10264 -12.99899 -12.85578 -12.61276 -12.46615 -12.30347 -12.15501 -11.95876 -11.83134 -11.65265 -11.50197 -11.44067 -11.25003 -10.91659 -10.46744 -10.28216 -8.53117 -7.79749 -5.40054 1.40969 1.45861 1.52347 2.52084 2.66232 3.08416 3.26837 3.55777 3.68763 3.72392 3.97461 4.02195 4.09271 4.20044 4.28441 4.35311 4.43243 4.46355 4.52292 4.57086 4.62953 4.73905 4.75956 4.82257 4.87688 4.92210 4.99858 5.02035 5.08824 5.18834 5.19149 5.23613 5.25585 5.29593 5.41706 5.51295 5.57196 5.67268 5.74810 6.29038 6.51508 7.21110 7.90190 8.40341 9.16314 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.017667 B = 0.007768 C = 0.006475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.451931 B = 3603.885991 C = 4323.601330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.134 3.866 3 N -0.593 5.593 4 C -0.244 4.244 5 H 0.043 0.957 6 C -0.025 4.025 7 N -0.918 5.918 8 Si 0.942 3.058 9 H -0.286 1.286 10 H -0.293 1.293 11 H -0.276 1.276 12 C 0.151 3.849 13 C 0.039 3.961 14 H 0.072 0.928 15 C 0.026 3.974 16 O -0.387 6.387 17 C 0.240 3.760 18 C -0.111 4.111 19 C -0.106 4.106 20 C -0.117 4.117 21 C -0.107 4.107 22 C -0.141 4.141 23 O -0.369 6.369 24 H 0.069 0.931 25 H 0.044 0.956 26 H 0.030 0.970 27 H 0.033 0.967 28 H 0.053 0.947 29 H 0.249 0.751 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.104 0.896 34 H 0.050 0.950 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.007 3.421 9.456 15.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.008 3.992 3 N -0.314 5.314 4 C -0.374 4.374 5 H 0.061 0.939 6 C -0.222 4.222 7 N -0.563 5.563 8 Si 0.771 3.229 9 H -0.212 1.212 10 H -0.219 1.219 11 H -0.201 1.201 12 C 0.024 3.976 13 C -0.021 4.021 14 H 0.090 0.910 15 C -0.051 4.051 16 O -0.308 6.308 17 C 0.163 3.837 18 C -0.149 4.149 19 C -0.144 4.144 20 C -0.155 4.155 21 C -0.144 4.144 22 C -0.179 4.179 23 O -0.289 6.289 24 H 0.088 0.912 25 H 0.063 0.937 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.122 0.878 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.104 0.896 40 H 0.101 0.899 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.800 3.663 9.340 15.489 hybrid contribution 0.443 0.443 -0.917 1.110 sum -11.357 4.106 8.423 14.724 Atomic orbital electron populations 1.22174 0.97772 1.00696 1.00312 1.21034 0.93439 0.85505 0.99179 1.43836 1.76102 1.09432 1.02041 1.18868 1.03256 1.20987 0.94313 0.93888 1.25571 0.94149 1.02584 0.99910 1.70061 1.03656 1.38154 1.44380 0.85737 0.76352 0.80740 0.80030 1.21237 1.21913 1.20125 1.20925 0.93917 0.96244 0.86485 1.24637 0.99467 0.89677 0.88273 0.90979 1.24046 0.97780 0.84971 0.98289 1.88734 1.64191 1.38416 1.39494 1.23578 0.90236 0.92193 0.77695 1.21554 1.01232 0.92378 0.99768 1.21450 0.96078 0.98152 0.98676 1.21572 0.95851 0.96280 1.01762 1.21432 1.00389 0.94610 0.97979 1.22170 0.94312 1.00115 1.01266 1.89681 1.74318 1.32877 1.32056 0.91246 0.93712 0.95116 0.94880 0.92862 0.94217 0.91513 0.92528 0.90936 0.87824 0.93108 0.90855 0.90112 0.91777 0.91627 0.89573 0.89925 0.91727 0.90997 0.91847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.25 10.21 71.98 0.73 -4.51 16 2 C 0.13 5.50 6.44 86.38 0.56 6.06 16 3 N -0.59 -29.50 2.43 -701.98 -1.70 -31.20 16 4 C -0.24 -13.71 9.11 84.04 0.77 -12.94 16 5 H 0.04 2.48 7.92 -2.91 -0.02 2.46 16 6 C -0.03 -1.45 4.95 84.86 0.42 -1.03 16 7 N -0.92 -54.68 11.48 21.65 0.25 -54.43 16 8 Si 0.94 47.19 29.60 68.60 2.03 49.22 16 9 H -0.29 -14.43 7.11 99.48 0.71 -13.73 16 10 H -0.29 -14.56 7.11 99.48 0.71 -13.86 16 11 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 12 C 0.15 7.00 4.99 86.38 0.43 7.44 16 13 C 0.04 1.56 3.18 31.10 0.10 1.66 16 14 H 0.07 2.68 5.84 -2.39 -0.01 2.67 16 15 C 0.03 0.89 7.64 72.49 0.55 1.45 16 16 O -0.39 -13.70 9.88 -125.99 -1.25 -14.94 16 17 C 0.24 8.57 1.05 30.37 0.03 8.60 16 18 C -0.11 -3.71 5.35 30.50 0.16 -3.54 16 19 C -0.11 -2.62 5.81 30.62 0.18 -2.44 16 20 C -0.12 -2.39 5.91 30.59 0.18 -2.21 16 21 C -0.11 -2.38 5.81 30.62 0.18 -2.21 16 22 C -0.14 -4.10 5.10 30.50 0.16 -3.94 16 23 O -0.37 -16.66 10.59 -125.99 -1.33 -17.99 16 24 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.04 1.51 6.58 -2.39 -0.02 1.50 16 26 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.03 1.42 8.08 -2.39 -0.02 1.40 16 28 H 0.05 1.96 7.83 -2.39 -0.02 1.94 16 29 H 0.25 14.48 8.31 -92.70 -0.77 13.71 16 30 H 0.07 3.66 5.52 -2.39 -0.01 3.65 16 31 H 0.06 2.36 7.86 -2.39 -0.02 2.34 16 32 H 0.07 2.55 7.85 -2.39 -0.02 2.53 16 33 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 34 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.06 1.66 7.80 -2.39 -0.02 1.64 16 38 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.08 1.49 8.14 -2.39 -0.02 1.48 16 41 H 0.06 1.51 7.79 -2.39 -0.02 1.49 16 42 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.06 1.84 7.08 -2.39 -0.02 1.82 16 Total: -1.00 -65.35 330.72 3.40 -61.95 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: 0.96 Total: 15.03 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: 4.45 Total: -7.63 kcal Atomic # 7 Polarization: -84.18 SS G_CDS: -1.46 Total: -85.63 kcal Atomic # 8 Polarization: -30.36 SS G_CDS: -2.58 Total: -32.94 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -65.35 3.40 -61.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167268210.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.358 kcal (2) G-P(sol) polarization free energy of solvation -65.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds