Wall clock time and date at job start Mon Mar 30 2020 01:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 111.00283 * 2 1 4 4 C 1.50702 * 109.46796 * 66.04964 * 3 2 1 5 5 H 1.08003 * 119.99822 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99809 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00257 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99969 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.47271 * 0.02562 * 8 6 4 10 10 H 1.48511 * 109.47155 * 119.99875 * 8 6 4 11 11 H 1.48499 * 109.47180 * 239.99883 * 8 6 4 12 12 C 1.46906 * 110.99573 * 236.04859 * 2 1 3 13 13 C 1.53000 * 109.47072 * 293.95488 * 12 2 1 14 14 H 1.09000 * 110.64152 * 308.13683 * 13 12 2 15 15 C 1.54474 * 110.72006 * 185.00369 * 13 12 2 16 16 O 1.43960 * 105.07777 * 219.89052 * 15 13 12 17 17 C 1.43451 * 107.01400 * 358.61605 * 16 15 13 18 18 C 1.52659 * 110.08905 * 265.55651 * 17 16 15 19 19 C 1.53069 * 109.48864 * 297.39691 * 18 17 16 20 20 C 1.52993 * 109.44210 * 300.59858 * 19 18 17 21 21 C 1.53000 * 109.54259 * 60.30008 * 20 19 18 22 22 C 1.52660 * 110.07503 * 143.66371 * 17 16 15 23 23 O 1.44030 * 106.63059 * 24.61247 * 17 16 15 24 24 H 1.09004 * 109.47457 * 183.95363 * 1 2 3 25 25 H 1.09001 * 109.46615 * 303.95014 * 1 2 3 26 26 H 1.08990 * 109.47358 * 63.94680 * 1 2 3 27 27 H 1.08999 * 109.46988 * 186.04548 * 3 2 1 28 28 H 1.08996 * 109.46945 * 306.05035 * 3 2 1 29 29 H 0.97001 * 120.00059 * 180.02562 * 7 6 4 30 30 H 1.08993 * 109.47164 * 53.95342 * 12 2 1 31 31 H 1.08996 * 109.46920 * 173.95376 * 12 2 1 32 32 H 1.09005 * 110.31802 * 338.78293 * 15 13 12 33 33 H 1.08994 * 110.32425 * 100.88211 * 15 13 12 34 34 H 1.08997 * 109.46766 * 57.40222 * 18 17 16 35 35 H 1.09002 * 109.46467 * 177.39556 * 18 17 16 36 36 H 1.09003 * 109.47042 * 180.61136 * 19 18 17 37 37 H 1.09000 * 109.47635 * 60.59379 * 19 18 17 38 38 H 1.09000 * 109.46065 * 300.27485 * 20 19 18 39 39 H 1.08999 * 109.44732 * 180.30795 * 20 19 18 40 40 H 1.08995 * 109.48129 * 179.70770 * 21 20 19 41 41 H 1.08998 * 109.48225 * 59.67627 * 21 20 19 42 42 H 1.09002 * 109.46646 * 182.59871 * 22 17 16 43 43 H 1.08995 * 109.46969 * 302.59524 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0470 1.2985 5 1 1.0741 1.5113 2.0485 6 6 2.0270 3.3493 1.5286 7 7 2.7121 4.0018 0.6151 8 14 1.5820 4.1870 3.1378 9 1 0.8150 3.2443 3.9912 10 1 2.8236 4.5946 3.8436 11 1 0.7545 5.3880 2.8585 12 6 1.9954 -0.7660 -1.1377 13 6 1.6313 -2.2426 -0.9705 14 1 1.9320 -2.6035 0.0131 15 6 2.2769 -3.0944 -2.0858 16 8 1.2718 -4.0587 -2.4498 17 6 0.1392 -3.8251 -1.6010 18 6 0.2018 -4.7389 -0.3798 19 6 0.1302 -6.1999 -0.8309 20 6 -1.1760 -6.4343 -1.5923 21 6 -1.2219 -5.5250 -2.8219 22 6 -1.1544 -4.0621 -2.3764 23 8 0.2131 -2.4484 -1.1845 24 1 -0.3634 -1.0252 0.0709 25 1 -0.3632 0.5739 0.8525 26 1 -0.3633 0.4513 -0.9231 27 1 3.0798 1.3443 -0.1082 28 1 1.5611 1.9273 -0.8308 29 1 2.9867 4.9179 0.7771 30 1 1.5610 -0.3872 -2.0628 31 1 3.0796 -0.6611 -1.1758 32 1 2.5286 -2.4686 -2.9422 33 1 3.1679 -3.5973 -1.7103 34 1 1.1370 -4.5689 0.1536 35 1 -0.6377 -4.5210 0.2804 36 1 0.1640 -6.8518 0.0421 37 1 0.9755 -6.4209 -1.4826 38 1 -2.0210 -6.2084 -0.9419 39 1 -1.2296 -7.4759 -1.9088 40 1 -2.1504 -5.6965 -3.3664 41 1 -0.3740 -5.7469 -3.4700 42 1 -2.0077 -3.8376 -1.7365 43 1 -1.1767 -3.4141 -3.2525 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167572806.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:02 Heat of formation + Delta-G solvation = -101.967606 kcal Electronic energy + Delta-G solvation = -21844.358193 eV Core-core repulsion = 18695.921387 eV Total energy + Delta-G solvation = -3148.436805 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.92237 -37.39763 -36.19564 -34.71271 -32.62390 -31.25773 -30.79312 -28.68431 -27.16537 -25.95517 -23.91698 -23.02478 -22.16651 -21.44299 -20.18073 -19.63096 -16.76860 -16.75100 -16.39005 -15.69660 -15.26524 -14.87362 -14.64109 -14.22087 -13.92298 -13.83499 -13.62643 -13.29090 -12.91077 -12.59522 -12.40916 -12.31215 -12.01351 -11.85011 -11.58570 -11.37406 -11.31691 -11.01002 -10.86114 -10.75603 -10.70451 -10.64780 -10.49501 -10.22712 -9.97399 -9.78357 -9.40684 -9.17194 -8.43301 -7.24506 -6.02164 -4.03105 3.31613 3.38815 3.44144 3.56828 3.94343 4.37859 4.49487 4.56968 4.61454 4.78851 4.96314 5.05467 5.09544 5.19004 5.28181 5.32260 5.34734 5.38056 5.45224 5.53262 5.58359 5.72150 5.78825 5.84781 5.87608 5.99205 6.01432 6.04352 6.07608 6.23185 6.25497 6.30526 6.45048 6.54036 6.96974 7.18777 7.28856 7.36016 7.81070 8.08261 8.21688 8.55256 9.04937 9.61048 11.08935 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.039307 B = 0.003826 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.171733 B = 7317.519436 C = 7566.021957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.539 5.539 3 C 0.191 3.809 4 C -0.505 4.505 5 H 0.064 0.936 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.061 3.939 13 C 0.054 3.946 14 H 0.090 0.910 15 C 0.025 3.975 16 O -0.376 6.376 17 C 0.251 3.749 18 C -0.148 4.148 19 C -0.113 4.113 20 C -0.121 4.121 21 C -0.114 4.114 22 C -0.107 4.107 23 O -0.355 6.355 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.008 0.992 27 H 0.029 0.971 28 H -0.009 1.009 29 H 0.260 0.740 30 H 0.034 0.966 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.074 -19.710 -5.968 21.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.263 5.263 3 C 0.066 3.934 4 C -0.543 4.543 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.211 1.211 12 C -0.068 4.068 13 C -0.003 4.003 14 H 0.107 0.893 15 C -0.053 4.053 16 O -0.298 6.298 17 C 0.175 3.825 18 C -0.186 4.186 19 C -0.150 4.150 20 C -0.159 4.159 21 C -0.151 4.151 22 C -0.145 4.145 23 O -0.275 6.275 24 H 0.084 0.916 25 H 0.087 0.913 26 H 0.026 0.974 27 H 0.047 0.953 28 H 0.009 0.991 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.098 0.902 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.004 -19.753 -5.695 21.158 hybrid contribution -0.203 1.110 0.241 1.154 sum -5.206 -18.643 -5.453 20.110 Atomic orbital electron populations 1.22348 0.88176 1.00819 0.99867 1.62136 1.07761 1.17743 1.38680 1.19748 0.95271 0.81593 0.96772 1.21199 1.34591 0.96900 1.01647 0.91778 1.24996 0.95341 0.97343 0.97032 1.69972 1.38550 1.11396 1.34036 0.86439 0.78142 0.79312 0.83518 1.19645 1.21015 1.21117 1.22081 1.00255 0.90294 0.94149 1.23942 0.80328 0.97669 0.98402 0.89252 1.23983 0.92000 0.90853 0.98436 1.88818 1.25695 1.55387 1.59851 1.23306 0.88196 0.82645 0.88380 1.22234 1.03399 0.95552 0.97423 1.21437 0.98309 0.95270 1.00023 1.21570 0.97871 0.99350 0.97095 1.21469 1.02247 0.93596 0.97819 1.21507 0.94955 0.97549 1.00458 1.89563 1.24163 1.26712 1.87097 0.91617 0.91344 0.97360 0.95305 0.99107 0.93002 0.94815 0.89830 0.89999 0.90060 0.91217 0.90248 0.91866 0.91258 0.91970 0.91925 0.91640 0.91119 0.90178 0.90662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 8.83 60.07 0.53 1.29 16 2 N -0.54 -11.93 4.75 -244.37 -1.16 -13.09 16 3 C 0.19 5.06 4.72 -4.98 -0.02 5.04 16 4 C -0.50 -14.38 8.46 -34.44 -0.29 -14.68 16 5 H 0.06 1.82 7.12 -52.48 -0.37 1.44 16 6 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 7 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 8 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 9 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 C 0.06 1.11 4.71 -3.82 -0.02 1.09 16 13 C 0.05 0.82 2.94 -25.96 -0.08 0.75 16 14 H 0.09 1.36 7.41 -51.93 -0.38 0.98 16 15 C 0.02 0.31 7.64 37.93 0.29 0.60 16 16 O -0.38 -5.11 9.88 -59.27 -0.59 -5.70 16 17 C 0.25 3.30 1.05 -27.08 -0.03 3.27 16 18 C -0.15 -1.70 5.10 -26.87 -0.14 -1.84 16 19 C -0.11 -1.08 5.81 -26.70 -0.16 -1.23 16 20 C -0.12 -1.04 5.91 -26.73 -0.16 -1.20 16 21 C -0.11 -1.07 5.81 -26.70 -0.16 -1.23 16 22 C -0.11 -1.23 5.35 -26.87 -0.14 -1.37 16 23 O -0.35 -5.62 8.07 -59.27 -0.48 -6.10 16 24 H 0.07 1.26 5.47 -51.93 -0.28 0.98 16 25 H 0.07 1.52 6.76 -51.93 -0.35 1.17 16 26 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 27 H 0.03 0.80 7.93 -51.93 -0.41 0.39 16 28 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 29 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.03 0.63 8.12 -51.93 -0.42 0.21 16 31 H 0.08 1.42 7.93 -51.93 -0.41 1.01 16 32 H 0.08 1.01 7.85 -51.93 -0.41 0.60 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.83 7.08 -51.93 -0.37 0.46 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.71 7.80 -51.93 -0.40 0.30 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.72 7.79 -51.93 -0.40 0.32 16 42 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 329.60 15.07 4.97 4.97 Total: -1.00 -30.63 329.60 -9.59 -40.22 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -7.59 Total: -2.82 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -0.46 Total: -8.06 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: -0.43 Total: -39.31 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: -1.06 Total: -11.80 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.63 -9.59 -40.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167572806.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.745 kcal (2) G-P(sol) polarization free energy of solvation -30.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds