Wall clock time and date at job start Mon Mar 30 2020 01:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 111.00283 * 2 1 4 4 C 1.50702 * 109.46796 * 66.04964 * 3 2 1 5 5 H 1.08003 * 119.99822 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99809 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00257 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99969 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.47271 * 0.02562 * 8 6 4 10 10 H 1.48511 * 109.47155 * 119.99875 * 8 6 4 11 11 H 1.48499 * 109.47180 * 239.99883 * 8 6 4 12 12 C 1.46906 * 110.99573 * 236.04859 * 2 1 3 13 13 C 1.53000 * 109.47072 * 293.95488 * 12 2 1 14 14 H 1.09000 * 110.64152 * 308.13683 * 13 12 2 15 15 C 1.54474 * 110.72006 * 185.00369 * 13 12 2 16 16 O 1.43960 * 105.07777 * 219.89052 * 15 13 12 17 17 C 1.43451 * 107.01400 * 358.61605 * 16 15 13 18 18 C 1.52659 * 110.08905 * 265.55651 * 17 16 15 19 19 C 1.53069 * 109.48864 * 297.39691 * 18 17 16 20 20 C 1.52993 * 109.44210 * 300.59858 * 19 18 17 21 21 C 1.53000 * 109.54259 * 60.30008 * 20 19 18 22 22 C 1.52660 * 110.07503 * 143.66371 * 17 16 15 23 23 O 1.44030 * 106.63059 * 24.61247 * 17 16 15 24 24 H 1.09004 * 109.47457 * 183.95363 * 1 2 3 25 25 H 1.09001 * 109.46615 * 303.95014 * 1 2 3 26 26 H 1.08990 * 109.47358 * 63.94680 * 1 2 3 27 27 H 1.08999 * 109.46988 * 186.04548 * 3 2 1 28 28 H 1.08996 * 109.46945 * 306.05035 * 3 2 1 29 29 H 0.97001 * 120.00059 * 180.02562 * 7 6 4 30 30 H 1.08993 * 109.47164 * 53.95342 * 12 2 1 31 31 H 1.08996 * 109.46920 * 173.95376 * 12 2 1 32 32 H 1.09005 * 110.31802 * 338.78293 * 15 13 12 33 33 H 1.08994 * 110.32425 * 100.88211 * 15 13 12 34 34 H 1.08997 * 109.46766 * 57.40222 * 18 17 16 35 35 H 1.09002 * 109.46467 * 177.39556 * 18 17 16 36 36 H 1.09003 * 109.47042 * 180.61136 * 19 18 17 37 37 H 1.09000 * 109.47635 * 60.59379 * 19 18 17 38 38 H 1.09000 * 109.46065 * 300.27485 * 20 19 18 39 39 H 1.08999 * 109.44732 * 180.30795 * 20 19 18 40 40 H 1.08995 * 109.48129 * 179.70770 * 21 20 19 41 41 H 1.08998 * 109.48225 * 59.67627 * 21 20 19 42 42 H 1.09002 * 109.46646 * 182.59871 * 22 17 16 43 43 H 1.08995 * 109.46969 * 302.59524 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0470 1.2985 5 1 1.0741 1.5113 2.0485 6 6 2.0270 3.3493 1.5286 7 7 2.7121 4.0018 0.6151 8 14 1.5820 4.1870 3.1378 9 1 0.8150 3.2443 3.9912 10 1 2.8236 4.5946 3.8436 11 1 0.7545 5.3880 2.8585 12 6 1.9954 -0.7660 -1.1377 13 6 1.6313 -2.2426 -0.9705 14 1 1.9320 -2.6035 0.0131 15 6 2.2769 -3.0944 -2.0858 16 8 1.2718 -4.0587 -2.4498 17 6 0.1392 -3.8251 -1.6010 18 6 0.2018 -4.7389 -0.3798 19 6 0.1302 -6.1999 -0.8309 20 6 -1.1760 -6.4343 -1.5923 21 6 -1.2219 -5.5250 -2.8219 22 6 -1.1544 -4.0621 -2.3764 23 8 0.2131 -2.4484 -1.1845 24 1 -0.3634 -1.0252 0.0709 25 1 -0.3632 0.5739 0.8525 26 1 -0.3633 0.4513 -0.9231 27 1 3.0798 1.3443 -0.1082 28 1 1.5611 1.9273 -0.8308 29 1 2.9867 4.9179 0.7771 30 1 1.5610 -0.3872 -2.0628 31 1 3.0796 -0.6611 -1.1758 32 1 2.5286 -2.4686 -2.9422 33 1 3.1679 -3.5973 -1.7103 34 1 1.1370 -4.5689 0.1536 35 1 -0.6377 -4.5210 0.2804 36 1 0.1640 -6.8518 0.0421 37 1 0.9755 -6.4209 -1.4826 38 1 -2.0210 -6.2084 -0.9419 39 1 -1.2296 -7.4759 -1.9088 40 1 -2.1504 -5.6965 -3.3664 41 1 -0.3740 -5.7469 -3.4700 42 1 -2.0077 -3.8376 -1.7365 43 1 -1.1767 -3.4141 -3.2525 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167572806.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:02 Heat of formation + Delta-G solvation = -121.234472 kcal Electronic energy + Delta-G solvation = -21845.193667 eV Core-core repulsion = 18695.921387 eV Total energy + Delta-G solvation = -3149.272279 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.99354 -38.67185 -37.51832 -35.90629 -34.70024 -32.42107 -31.75766 -29.77102 -29.13788 -27.44534 -25.66625 -23.89975 -23.05225 -22.94899 -21.82285 -20.53431 -18.54124 -17.92963 -17.76162 -16.88716 -16.77141 -16.24669 -15.82263 -15.75396 -15.33024 -15.13197 -14.67057 -14.56982 -14.07920 -13.90625 -13.69322 -13.41939 -13.34977 -13.27306 -13.06339 -12.90787 -12.74116 -12.55721 -12.35793 -12.13624 -12.10870 -11.84827 -11.65595 -11.47183 -11.39180 -11.17218 -11.07876 -10.63533 -10.38338 -9.10625 -8.22060 -6.32067 1.40871 1.41122 1.55221 2.39560 2.49494 2.90440 3.08244 3.12136 3.62318 3.70770 3.80420 3.86290 4.02574 4.04780 4.19529 4.27136 4.41218 4.47016 4.50561 4.52532 4.56020 4.61624 4.65600 4.76397 4.80913 4.89978 4.97696 4.99637 5.09141 5.16156 5.17939 5.21887 5.23576 5.29113 5.31519 5.37723 5.53070 5.63849 6.01699 6.10490 6.26962 6.56758 6.83612 7.37634 8.89497 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.039307 B = 0.003826 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.171733 B = 7317.519436 C = 7566.021957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.543 5.543 3 C 0.205 3.795 4 C -0.524 4.524 5 H 0.062 0.938 6 C 0.001 3.999 7 N -0.935 5.935 8 Si 0.971 3.029 9 H -0.264 1.264 10 H -0.276 1.276 11 H -0.279 1.279 12 C 0.061 3.939 13 C 0.061 3.939 14 H 0.091 0.909 15 C 0.029 3.971 16 O -0.382 6.382 17 C 0.245 3.755 18 C -0.147 4.147 19 C -0.109 4.109 20 C -0.120 4.120 21 C -0.109 4.109 22 C -0.109 4.109 23 O -0.378 6.378 24 H 0.087 0.913 25 H 0.052 0.948 26 H 0.000 1.000 27 H 0.010 0.990 28 H -0.040 1.040 29 H 0.265 0.735 30 H 0.026 0.974 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.106 0.894 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.062 0.938 42 H 0.084 0.916 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.655 -21.348 -5.207 22.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 N -0.267 5.267 3 C 0.079 3.921 4 C -0.562 4.562 5 H 0.080 0.920 6 C -0.197 4.197 7 N -0.575 5.575 8 Si 0.795 3.205 9 H -0.188 1.188 10 H -0.202 1.202 11 H -0.204 1.204 12 C -0.067 4.067 13 C 0.003 3.997 14 H 0.109 0.891 15 C -0.048 4.048 16 O -0.304 6.304 17 C 0.169 3.831 18 C -0.185 4.185 19 C -0.147 4.147 20 C -0.157 4.157 21 C -0.146 4.146 22 C -0.147 4.147 23 O -0.299 6.299 24 H 0.106 0.894 25 H 0.070 0.930 26 H 0.018 0.982 27 H 0.028 0.972 28 H -0.023 1.023 29 H 0.074 0.926 30 H 0.044 0.956 31 H 0.110 0.890 32 H 0.104 0.896 33 H 0.124 0.876 34 H 0.082 0.918 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.080 0.920 42 H 0.102 0.898 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.590 -21.420 -4.945 22.683 hybrid contribution -0.025 1.590 -0.063 1.592 sum -5.614 -19.830 -5.008 21.209 Atomic orbital electron populations 1.22264 0.87476 1.01769 0.98651 1.62063 1.08384 1.15387 1.40910 1.19426 0.93926 0.83646 0.95089 1.21482 1.34858 0.97594 1.02269 0.91964 1.25925 0.94971 0.97983 1.00802 1.70090 1.39366 1.11912 1.36151 0.85310 0.78140 0.78137 0.78877 1.18776 1.20165 1.20434 1.22157 1.00604 0.91742 0.92237 1.23779 0.80727 0.95625 0.99539 0.89078 1.24016 0.92384 0.90680 0.97724 1.88810 1.25946 1.55413 1.60214 1.23604 0.88715 0.81559 0.89219 1.22235 1.03131 0.96550 0.96574 1.21433 0.98669 0.93974 1.00606 1.21581 0.97462 1.00070 0.96579 1.21454 1.02741 0.92175 0.98267 1.21577 0.94298 0.98938 0.99901 1.89506 1.24331 1.28726 1.87359 0.89441 0.92955 0.98185 0.97170 1.02252 0.92626 0.95604 0.89016 0.89632 0.87607 0.91761 0.90206 0.90413 0.91893 0.91367 0.90239 0.89995 0.91970 0.89769 0.91791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.98 8.83 127.69 1.13 3.10 16 2 N -0.54 -24.44 4.75 -927.06 -4.41 -28.85 16 3 C 0.21 11.23 4.72 85.56 0.40 11.63 16 4 C -0.52 -30.32 8.46 25.60 0.22 -30.10 16 5 H 0.06 3.55 7.12 -2.91 -0.02 3.53 16 6 C 0.00 0.06 5.46 84.65 0.46 0.53 16 7 N -0.93 -56.77 13.29 21.45 0.28 -56.48 16 8 Si 0.97 44.74 29.54 68.60 2.03 46.76 16 9 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 10 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 12 C 0.06 2.22 4.71 86.30 0.41 2.63 16 13 C 0.06 1.80 2.94 31.10 0.09 1.89 16 14 H 0.09 2.67 7.41 -2.39 -0.02 2.66 16 15 C 0.03 0.70 7.64 72.48 0.55 1.25 16 16 O -0.38 -9.86 9.88 -125.99 -1.24 -11.10 16 17 C 0.25 6.14 1.05 30.37 0.03 6.17 16 18 C -0.15 -3.13 5.10 30.50 0.16 -2.98 16 19 C -0.11 -1.83 5.81 30.61 0.18 -1.66 16 20 C -0.12 -1.73 5.91 30.59 0.18 -1.55 16 21 C -0.11 -1.83 5.81 30.62 0.18 -1.65 16 22 C -0.11 -2.38 5.35 30.50 0.16 -2.22 16 23 O -0.38 -11.72 8.07 -125.99 -1.02 -12.74 16 24 H 0.09 3.33 5.47 -2.38 -0.01 3.32 16 25 H 0.05 2.36 6.76 -2.39 -0.02 2.34 16 26 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 27 H 0.01 0.59 7.93 -2.39 -0.02 0.57 16 28 H -0.04 -2.41 8.12 -2.39 -0.02 -2.42 16 29 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 30 H 0.03 0.98 8.12 -2.39 -0.02 0.96 16 31 H 0.09 3.14 7.93 -2.39 -0.02 3.12 16 32 H 0.09 2.00 7.85 -2.38 -0.02 1.98 16 33 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.06 1.42 7.08 -2.39 -0.02 1.41 16 35 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.06 1.15 7.80 -2.39 -0.02 1.13 16 38 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.06 1.16 7.79 -2.39 -0.02 1.14 16 42 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -65.68 329.60 0.75 -64.93 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: 0.96 Total: 10.44 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: 4.15 Total: -12.95 kcal Atomic # 7 Polarization: -81.21 SS G_CDS: -4.12 Total: -85.33 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -2.26 Total: -23.84 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -65.68 0.75 -64.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167572806.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.307 kcal (2) G-P(sol) polarization free energy of solvation -65.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds