Wall clock time and date at job start Mon Mar 30 2020 01:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46895 * 111.00331 * 2 1 4 4 C 1.50703 * 109.47018 * 293.95846 * 3 2 1 5 5 H 1.08001 * 120.00143 * 359.97438 * 4 3 2 6 6 C 1.37884 * 119.99839 * 180.02562 * 4 3 2 7 7 N 1.31510 * 119.99987 * 179.97438 * 6 4 3 8 8 Si 1.86800 * 119.99714 * 359.97438 * 6 4 3 9 9 H 1.48497 * 109.47058 * 90.00826 * 8 6 4 10 10 H 1.48505 * 109.46801 * 210.00626 * 8 6 4 11 11 H 1.48494 * 109.47353 * 330.00208 * 8 6 4 12 12 C 1.46898 * 110.99996 * 123.95977 * 2 1 3 13 13 C 1.52994 * 109.47358 * 163.70568 * 12 2 1 14 14 H 1.09005 * 110.86344 * 56.54606 * 13 12 2 15 15 C 1.54920 * 110.98162 * 180.35692 * 13 12 2 16 16 O 1.44210 * 103.08203 * 153.67757 * 15 13 12 17 17 C 1.43318 * 107.26155 * 338.58781 * 16 15 13 18 18 C 1.52946 * 109.64084 * 239.61981 * 17 16 15 19 19 C 1.53010 * 109.45951 * 299.10478 * 18 17 16 20 20 C 1.52997 * 109.47360 * 300.23391 * 19 18 17 21 21 C 1.52999 * 109.49547 * 60.16161 * 20 19 18 22 22 C 1.52964 * 109.62449 * 118.97905 * 17 16 15 23 23 O 1.43694 * 108.85289 * 359.31971 * 17 16 15 24 24 H 1.09006 * 109.46378 * 301.42755 * 1 2 3 25 25 H 1.08996 * 109.47380 * 61.41900 * 1 2 3 26 26 H 1.08993 * 109.47514 * 181.42895 * 1 2 3 27 27 H 1.08993 * 109.47088 * 53.95658 * 3 2 1 28 28 H 1.09003 * 109.47165 * 173.95998 * 3 2 1 29 29 H 0.97000 * 120.00400 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.47421 * 43.70243 * 12 2 1 31 31 H 1.09002 * 109.46872 * 283.70773 * 12 2 1 32 32 H 1.08998 * 110.69712 * 272.07947 * 15 13 12 33 33 H 1.09000 * 110.69133 * 35.10759 * 15 13 12 34 34 H 1.09003 * 109.47413 * 59.10663 * 18 17 16 35 35 H 1.09006 * 109.47080 * 179.11180 * 18 17 16 36 36 H 1.09005 * 109.47251 * 180.23255 * 19 18 17 37 37 H 1.09002 * 109.47198 * 60.23187 * 19 18 17 38 38 H 1.09011 * 109.46435 * 300.15569 * 20 19 18 39 39 H 1.09001 * 109.46497 * 180.17207 * 20 19 18 40 40 H 1.08997 * 109.46734 * 179.82959 * 21 20 19 41 41 H 1.09001 * 109.46655 * 59.82980 * 21 20 19 42 42 H 1.09000 * 109.47017 * 180.88797 * 22 17 16 43 43 H 1.08994 * 109.47373 * 300.89261 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0746 1.5112 -2.0488 6 6 2.0278 3.3491 -1.5289 7 7 1.7153 3.9387 -2.6621 8 14 3.0011 4.2756 -0.2313 9 1 4.4534 4.0622 -0.4558 10 1 2.6938 5.7256 -0.3236 11 1 2.6298 3.7758 1.1168 12 6 1.9955 -0.7661 1.1375 13 6 3.4708 -1.0906 0.8948 14 1 4.0457 -0.1802 0.7254 15 6 4.0599 -1.9075 2.0719 16 8 5.1374 -2.6401 1.4538 17 6 4.8650 -2.6915 0.0477 18 6 4.7518 -4.1492 -0.4011 19 6 6.0747 -4.8696 -0.1320 20 6 7.1986 -4.1782 -0.9064 21 6 7.3128 -2.7225 -0.4498 22 6 5.9922 -1.9984 -0.7197 23 8 3.6244 -2.0138 -0.2100 24 1 -0.3632 0.5359 0.8770 25 1 -0.3634 0.4916 -0.9024 26 1 -0.3634 -1.0273 0.0256 27 1 1.5613 1.9272 0.8309 28 1 3.0799 1.3443 0.1081 29 1 1.9899 4.8548 -2.8242 30 1 1.4321 -1.6932 1.2431 31 1 1.8983 -0.1762 2.0489 32 1 4.4408 -1.2444 2.8486 33 1 3.3128 -2.5879 2.4806 34 1 3.9517 -4.6392 0.1538 35 1 4.5290 -4.1849 -1.4676 36 1 5.9956 -5.9075 -0.4556 37 1 6.2954 -4.8374 0.9349 38 1 6.9764 -4.2080 -1.9732 39 1 8.1403 -4.6934 -0.7170 40 1 8.1156 -2.2312 -0.9995 41 1 7.5321 -2.6927 0.6175 42 1 5.7748 -2.0250 -1.7874 43 1 6.0720 -0.9623 -0.3909 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167572807.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:04 Heat of formation + Delta-G solvation = -96.370257 kcal Electronic energy + Delta-G solvation = -22055.390580 eV Core-core repulsion = 18907.196494 eV Total energy + Delta-G solvation = -3148.194086 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.72656 -37.39410 -36.33373 -34.65343 -32.53189 -31.12945 -30.83944 -28.56515 -27.94292 -26.00773 -23.53673 -22.88754 -22.05655 -21.72692 -19.94486 -19.51166 -17.22600 -16.66121 -16.57680 -15.39885 -15.13872 -14.81462 -14.48608 -14.31739 -14.04475 -13.59785 -13.50820 -13.36001 -12.93675 -12.62715 -12.44803 -12.24964 -12.20070 -12.08754 -11.70597 -11.58529 -11.20114 -11.14938 -10.82715 -10.72041 -10.62209 -10.53293 -10.40457 -10.35827 -9.87214 -9.85954 -9.30349 -9.17818 -8.57026 -7.38054 -6.05227 -4.02164 3.26098 3.33767 3.34172 3.54530 4.07091 4.39914 4.42235 4.70093 4.71469 4.89782 5.01666 5.08606 5.15340 5.20949 5.27038 5.36079 5.43417 5.49083 5.51114 5.56038 5.59592 5.68739 5.81626 5.92011 5.95933 6.00911 6.04658 6.10571 6.15766 6.19909 6.23131 6.26465 6.30313 6.42108 6.65047 6.82122 6.94504 7.36120 7.57599 7.87850 8.00989 8.65568 9.04401 9.56214 11.08036 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021969 B = 0.005238 C = 0.004804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.232049 B = 5344.655639 C = 5827.482201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.525 5.525 3 C 0.160 3.840 4 C -0.506 4.506 5 H 0.081 0.919 6 C 0.069 3.931 7 N -0.900 5.900 8 Si 0.872 3.128 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.269 1.269 12 C 0.061 3.939 13 C 0.057 3.943 14 H 0.086 0.914 15 C 0.024 3.976 16 O -0.378 6.378 17 C 0.254 3.746 18 C -0.117 4.117 19 C -0.112 4.112 20 C -0.121 4.121 21 C -0.113 4.113 22 C -0.137 4.137 23 O -0.344 6.344 24 H 0.012 0.988 25 H 0.080 0.920 26 H 0.048 0.952 27 H -0.012 1.012 28 H 0.022 0.978 29 H 0.263 0.737 30 H 0.074 0.926 31 H 0.042 0.958 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.081 0.919 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.938 -15.290 8.783 19.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.248 5.248 3 C 0.034 3.966 4 C -0.545 4.545 5 H 0.099 0.901 6 C -0.133 4.133 7 N -0.539 5.539 8 Si 0.699 3.301 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.193 1.193 12 C -0.068 4.068 13 C -0.001 4.001 14 H 0.103 0.897 15 C -0.054 4.054 16 O -0.299 6.299 17 C 0.177 3.823 18 C -0.155 4.155 19 C -0.150 4.150 20 C -0.159 4.159 21 C -0.151 4.151 22 C -0.175 4.175 23 O -0.264 6.264 24 H 0.030 0.970 25 H 0.099 0.901 26 H 0.067 0.933 27 H 0.006 0.994 28 H 0.040 0.960 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.060 0.940 32 H 0.113 0.887 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.100 0.900 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.137 -15.464 8.153 19.283 hybrid contribution 0.232 1.272 1.387 1.896 sum 8.369 -14.192 9.540 19.038 Atomic orbital electron populations 1.22217 0.87724 0.99490 1.01361 1.61867 1.07464 1.16327 1.39163 1.20258 0.94818 0.84131 0.97429 1.21020 1.35531 0.97111 1.00813 0.90051 1.24892 0.95813 0.97349 0.95233 1.69888 1.46927 1.13269 1.23794 0.86914 0.80973 0.79439 0.82755 1.20145 1.21112 1.19348 1.22013 0.92661 0.98758 0.93390 1.23986 0.98399 0.93505 0.84203 0.89653 1.24189 0.89926 0.94710 0.96540 1.88822 1.45303 1.76136 1.19608 1.23272 0.85009 0.92835 0.81177 1.21767 0.98367 0.93079 1.02308 1.21441 0.93969 0.98460 1.01121 1.21571 0.98401 0.95844 1.00045 1.21440 0.96604 0.95165 1.01884 1.22114 0.94379 0.99904 1.01120 1.89411 1.38487 1.53323 1.45182 0.96953 0.90128 0.93333 0.99434 0.96017 0.92673 0.90769 0.93978 0.88709 0.90896 0.91166 0.90275 0.91850 0.91257 0.91939 0.92049 0.91895 0.91338 0.90040 0.91190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 9.32 60.07 0.56 1.34 16 2 N -0.52 -11.16 4.70 -244.38 -1.15 -12.31 16 3 C 0.16 3.89 3.64 -4.98 -0.02 3.87 16 4 C -0.51 -14.52 9.09 -34.44 -0.31 -14.83 16 5 H 0.08 2.55 7.34 -52.49 -0.39 2.17 16 6 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 7 N -0.90 -27.69 13.96 55.43 0.77 -26.91 16 8 Si 0.87 21.48 27.47 -169.99 -4.67 16.81 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 11 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 12 C 0.06 1.03 4.75 -3.83 -0.02 1.01 16 13 C 0.06 0.94 3.48 -25.72 -0.09 0.85 16 14 H 0.09 1.54 6.61 -51.93 -0.34 1.20 16 15 C 0.02 0.31 7.54 38.17 0.29 0.60 16 16 O -0.38 -5.42 9.62 -59.04 -0.57 -5.99 16 17 C 0.25 3.75 1.02 -26.78 -0.03 3.73 16 18 C -0.12 -1.48 5.33 -26.75 -0.14 -1.62 16 19 C -0.11 -1.18 5.79 -26.73 -0.15 -1.33 16 20 C -0.12 -1.22 5.92 -26.73 -0.16 -1.38 16 21 C -0.11 -1.30 5.79 -26.73 -0.15 -1.46 16 22 C -0.14 -1.94 5.28 -26.75 -0.14 -2.08 16 23 O -0.34 -6.15 10.71 -59.04 -0.63 -6.78 16 24 H 0.01 0.22 8.13 -51.93 -0.42 -0.20 16 25 H 0.08 1.72 6.90 -51.93 -0.36 1.36 16 26 H 0.05 0.80 7.97 -51.93 -0.41 0.38 16 27 H -0.01 -0.29 7.17 -51.93 -0.37 -0.66 16 28 H 0.02 0.53 5.84 -51.93 -0.30 0.23 16 29 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.07 1.13 7.87 -51.93 -0.41 0.72 16 31 H 0.04 0.66 8.05 -51.93 -0.42 0.24 16 32 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.07 0.85 8.03 -51.93 -0.42 0.44 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.76 7.72 -51.93 -0.40 0.36 16 38 H 0.06 0.62 8.14 -51.92 -0.42 0.19 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.82 7.72 -51.93 -0.40 0.41 16 42 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 330.55 15.07 4.98 4.98 Total: -1.00 -31.45 330.55 -9.35 -40.80 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -7.62 Total: -1.19 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -0.47 Total: -9.42 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: -0.38 Total: -39.22 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: -1.20 Total: -12.77 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.45 -9.35 -40.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167572807.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.573 kcal (2) G-P(sol) polarization free energy of solvation -31.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds