Wall clock time and date at job start Mon Mar 30 2020 01:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46895 * 111.00331 * 2 1 4 4 C 1.50703 * 109.47018 * 293.95846 * 3 2 1 5 5 H 1.08001 * 120.00143 * 359.97438 * 4 3 2 6 6 C 1.37884 * 119.99839 * 180.02562 * 4 3 2 7 7 N 1.31510 * 119.99987 * 179.97438 * 6 4 3 8 8 Si 1.86800 * 119.99714 * 359.97438 * 6 4 3 9 9 H 1.48497 * 109.47058 * 90.00826 * 8 6 4 10 10 H 1.48505 * 109.46801 * 210.00626 * 8 6 4 11 11 H 1.48494 * 109.47353 * 330.00208 * 8 6 4 12 12 C 1.46898 * 110.99996 * 123.95977 * 2 1 3 13 13 C 1.52994 * 109.47358 * 163.70568 * 12 2 1 14 14 H 1.09005 * 110.86344 * 56.54606 * 13 12 2 15 15 C 1.54920 * 110.98162 * 180.35692 * 13 12 2 16 16 O 1.44210 * 103.08203 * 153.67757 * 15 13 12 17 17 C 1.43318 * 107.26155 * 338.58781 * 16 15 13 18 18 C 1.52946 * 109.64084 * 239.61981 * 17 16 15 19 19 C 1.53010 * 109.45951 * 299.10478 * 18 17 16 20 20 C 1.52997 * 109.47360 * 300.23391 * 19 18 17 21 21 C 1.52999 * 109.49547 * 60.16161 * 20 19 18 22 22 C 1.52964 * 109.62449 * 118.97905 * 17 16 15 23 23 O 1.43694 * 108.85289 * 359.31971 * 17 16 15 24 24 H 1.09006 * 109.46378 * 301.42755 * 1 2 3 25 25 H 1.08996 * 109.47380 * 61.41900 * 1 2 3 26 26 H 1.08993 * 109.47514 * 181.42895 * 1 2 3 27 27 H 1.08993 * 109.47088 * 53.95658 * 3 2 1 28 28 H 1.09003 * 109.47165 * 173.95998 * 3 2 1 29 29 H 0.97000 * 120.00400 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.47421 * 43.70243 * 12 2 1 31 31 H 1.09002 * 109.46872 * 283.70773 * 12 2 1 32 32 H 1.08998 * 110.69712 * 272.07947 * 15 13 12 33 33 H 1.09000 * 110.69133 * 35.10759 * 15 13 12 34 34 H 1.09003 * 109.47413 * 59.10663 * 18 17 16 35 35 H 1.09006 * 109.47080 * 179.11180 * 18 17 16 36 36 H 1.09005 * 109.47251 * 180.23255 * 19 18 17 37 37 H 1.09002 * 109.47198 * 60.23187 * 19 18 17 38 38 H 1.09011 * 109.46435 * 300.15569 * 20 19 18 39 39 H 1.09001 * 109.46497 * 180.17207 * 20 19 18 40 40 H 1.08997 * 109.46734 * 179.82959 * 21 20 19 41 41 H 1.09001 * 109.46655 * 59.82980 * 21 20 19 42 42 H 1.09000 * 109.47017 * 180.88797 * 22 17 16 43 43 H 1.08994 * 109.47373 * 300.89261 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0746 1.5112 -2.0488 6 6 2.0278 3.3491 -1.5289 7 7 1.7153 3.9387 -2.6621 8 14 3.0011 4.2756 -0.2313 9 1 4.4534 4.0622 -0.4558 10 1 2.6938 5.7256 -0.3236 11 1 2.6298 3.7758 1.1168 12 6 1.9955 -0.7661 1.1375 13 6 3.4708 -1.0906 0.8948 14 1 4.0457 -0.1802 0.7254 15 6 4.0599 -1.9075 2.0719 16 8 5.1374 -2.6401 1.4538 17 6 4.8650 -2.6915 0.0477 18 6 4.7518 -4.1492 -0.4011 19 6 6.0747 -4.8696 -0.1320 20 6 7.1986 -4.1782 -0.9064 21 6 7.3128 -2.7225 -0.4498 22 6 5.9922 -1.9984 -0.7197 23 8 3.6244 -2.0138 -0.2100 24 1 -0.3632 0.5359 0.8770 25 1 -0.3634 0.4916 -0.9024 26 1 -0.3634 -1.0273 0.0256 27 1 1.5613 1.9272 0.8309 28 1 3.0799 1.3443 0.1081 29 1 1.9899 4.8548 -2.8242 30 1 1.4321 -1.6932 1.2431 31 1 1.8983 -0.1762 2.0489 32 1 4.4408 -1.2444 2.8486 33 1 3.3128 -2.5879 2.4806 34 1 3.9517 -4.6392 0.1538 35 1 4.5290 -4.1849 -1.4676 36 1 5.9956 -5.9075 -0.4556 37 1 6.2954 -4.8374 0.9349 38 1 6.9764 -4.2080 -1.9732 39 1 8.1403 -4.6934 -0.7170 40 1 8.1156 -2.2312 -0.9995 41 1 7.5321 -2.6927 0.6175 42 1 5.7748 -2.0250 -1.7874 43 1 6.0720 -0.9623 -0.3909 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167572807.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:03 Heat of formation + Delta-G solvation = -117.621073 kcal Electronic energy + Delta-G solvation = -22056.312085 eV Core-core repulsion = 18907.196494 eV Total energy + Delta-G solvation = -3149.115591 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.86292 -38.72198 -37.59824 -35.86518 -34.67419 -32.38037 -31.81671 -30.13342 -29.46556 -27.32339 -25.26912 -23.91133 -23.14885 -23.02287 -21.57215 -20.51358 -19.10662 -18.14084 -17.68258 -16.81203 -16.35401 -16.30951 -15.97894 -15.42291 -15.37972 -15.18479 -14.64283 -14.59950 -14.39503 -14.18317 -13.76943 -13.53256 -13.37447 -13.18602 -13.14215 -13.02914 -12.78687 -12.44835 -12.15970 -12.13011 -12.09107 -11.86292 -11.65508 -11.51564 -11.47466 -11.28985 -11.03765 -10.78585 -10.30952 -9.01578 -8.29803 -6.33082 1.31409 1.32896 1.43203 2.31804 2.42892 2.94885 3.02715 3.08427 3.66219 3.72027 3.77855 3.85394 4.02318 4.04733 4.23795 4.29951 4.35328 4.46944 4.48353 4.50412 4.53927 4.54303 4.64859 4.67104 4.75588 4.86248 4.89467 4.97053 5.00568 5.04683 5.08024 5.18145 5.21838 5.22721 5.27651 5.33762 5.52043 5.52823 5.95698 6.22551 6.33136 6.63703 6.73052 7.30033 8.87130 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021969 B = 0.005238 C = 0.004804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.232049 B = 5344.655639 C = 5827.482201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.549 5.549 3 C 0.173 3.827 4 C -0.516 4.516 5 H 0.035 0.965 6 C 0.008 3.992 7 N -0.948 5.948 8 Si 0.944 3.056 9 H -0.267 1.267 10 H -0.279 1.279 11 H -0.247 1.247 12 C 0.063 3.937 13 C 0.051 3.949 14 H 0.062 0.938 15 C 0.031 3.969 16 O -0.381 6.381 17 C 0.249 3.751 18 C -0.117 4.117 19 C -0.107 4.107 20 C -0.120 4.120 21 C -0.108 4.108 22 C -0.141 4.141 23 O -0.374 6.374 24 H 0.025 0.975 25 H 0.045 0.955 26 H 0.079 0.921 27 H -0.008 1.008 28 H 0.024 0.976 29 H 0.267 0.733 30 H 0.095 0.905 31 H 0.063 0.937 32 H 0.117 0.883 33 H 0.094 0.906 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.241 -16.647 11.390 22.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 N -0.273 5.273 3 C 0.046 3.954 4 C -0.555 4.555 5 H 0.053 0.947 6 C -0.189 4.189 7 N -0.589 5.589 8 Si 0.767 3.233 9 H -0.192 1.192 10 H -0.205 1.205 11 H -0.171 1.171 12 C -0.065 4.065 13 C -0.007 4.007 14 H 0.080 0.920 15 C -0.046 4.046 16 O -0.303 6.303 17 C 0.172 3.828 18 C -0.154 4.154 19 C -0.144 4.144 20 C -0.157 4.157 21 C -0.146 4.146 22 C -0.179 4.179 23 O -0.295 6.295 24 H 0.043 0.957 25 H 0.064 0.936 26 H 0.097 0.903 27 H 0.010 0.990 28 H 0.042 0.958 29 H 0.076 0.924 30 H 0.113 0.887 31 H 0.081 0.919 32 H 0.135 0.865 33 H 0.112 0.888 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.100 0.900 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.435 -16.850 10.776 22.115 hybrid contribution -0.242 1.635 0.488 1.723 sum 9.193 -15.216 11.264 21.046 Atomic orbital electron populations 1.22162 0.86842 1.01188 1.00169 1.61721 1.08532 1.14797 1.42291 1.19972 0.94888 0.85761 0.94798 1.21264 1.34873 0.97475 1.01859 0.94698 1.25854 0.96991 0.98403 0.97701 1.70051 1.48629 1.13911 1.26303 0.85759 0.79314 0.77845 0.80342 1.19247 1.20485 1.17061 1.22116 0.92941 0.99089 0.92383 1.23997 0.98023 0.93148 0.85532 0.92027 1.24289 0.90031 0.94853 0.95423 1.88803 1.45869 1.76308 1.19278 1.23467 0.84012 0.93775 0.81536 1.21796 0.99859 0.91860 1.01919 1.21433 0.92660 0.99271 1.01059 1.21585 0.99335 0.94767 1.00015 1.21421 0.95128 0.96095 1.01921 1.22140 0.96087 0.99285 1.00362 1.89384 1.40019 1.53789 1.46337 0.95698 0.93588 0.90274 0.99035 0.95845 0.92427 0.88669 0.91907 0.86464 0.88806 0.91032 0.90776 0.89808 0.91486 0.91817 0.89953 0.90978 0.91545 0.91130 0.93146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.69 9.32 127.69 1.19 2.88 16 2 N -0.55 -23.14 4.70 -927.07 -4.36 -27.50 16 3 C 0.17 8.38 3.64 85.56 0.31 8.69 16 4 C -0.52 -30.62 9.09 25.60 0.23 -30.38 16 5 H 0.03 2.33 7.34 -2.91 -0.02 2.30 16 6 C 0.01 0.45 5.47 84.66 0.46 0.92 16 7 N -0.95 -60.26 13.96 21.45 0.30 -59.96 16 8 Si 0.94 44.30 27.47 68.60 1.88 46.18 16 9 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 10 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 11 H -0.25 -10.65 6.54 99.48 0.65 -10.00 16 12 C 0.06 1.99 4.75 86.30 0.41 2.40 16 13 C 0.05 1.61 3.48 31.25 0.11 1.72 16 14 H 0.06 2.22 6.61 -2.38 -0.02 2.20 16 15 C 0.03 0.72 7.54 72.64 0.55 1.27 16 16 O -0.38 -10.21 9.62 -126.22 -1.21 -11.43 16 17 C 0.25 7.15 1.02 30.56 0.03 7.18 16 18 C -0.12 -2.78 5.33 30.58 0.16 -2.61 16 19 C -0.11 -1.97 5.79 30.60 0.18 -1.80 16 20 C -0.12 -2.13 5.92 30.59 0.18 -1.95 16 21 C -0.11 -2.34 5.79 30.60 0.18 -2.16 16 22 C -0.14 -3.98 5.28 30.58 0.16 -3.82 16 23 O -0.37 -13.28 10.71 -126.22 -1.35 -14.63 16 24 H 0.02 0.87 8.13 -2.38 -0.02 0.85 16 25 H 0.05 2.04 6.90 -2.39 -0.02 2.02 16 26 H 0.08 2.48 7.97 -2.39 -0.02 2.46 16 27 H -0.01 -0.37 7.17 -2.39 -0.02 -0.39 16 28 H 0.02 1.13 5.84 -2.39 -0.01 1.12 16 29 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 30 H 0.10 2.61 7.87 -2.39 -0.02 2.59 16 31 H 0.06 1.75 8.05 -2.39 -0.02 1.73 16 32 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.09 1.84 8.03 -2.39 -0.02 1.82 16 34 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 36 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 37 H 0.07 1.29 7.72 -2.39 -0.02 1.27 16 38 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 39 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.07 1.47 7.72 -2.39 -0.02 1.45 16 42 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -70.25 330.55 0.31 -69.94 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: 0.90 Total: 15.07 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: 4.15 Total: -17.67 kcal Atomic # 7 Polarization: -83.40 SS G_CDS: -4.06 Total: -87.46 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -2.57 Total: -26.06 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.88 Total: 46.18 kcal Total: -70.25 0.31 -69.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167572807.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.684 kcal (2) G-P(sol) polarization free energy of solvation -70.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds