Wall clock time and date at job start Mon Mar 30 2020 00:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34232 * 117.00025 * 2 1 4 4 O 1.20815 * 120.00273 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99583 * 180.02562 * 3 2 1 6 6 C 1.52996 * 109.47330 * 60.00010 * 5 3 2 7 7 C 1.53004 * 109.46967 * 180.02562 * 5 3 2 8 8 C 1.52998 * 109.47086 * 180.02562 * 7 5 3 9 9 C 1.53000 * 109.47083 * 299.99575 * 8 7 5 10 10 N 1.46899 * 109.47294 * 180.02562 * 9 8 7 11 11 C 1.46901 * 111.00393 * 150.89489 * 10 9 8 12 12 H 1.09007 * 109.46842 * 343.96792 * 11 10 9 13 13 C 1.53004 * 109.47092 * 103.96480 * 11 10 9 14 14 C 1.50698 * 109.47544 * 223.96999 * 11 10 9 15 15 H 1.08002 * 119.99891 * 355.14532 * 14 11 10 16 16 C 1.37879 * 120.00152 * 175.14323 * 14 11 10 17 17 N 1.31515 * 119.99582 * 159.20323 * 16 14 11 18 18 Si 1.86799 * 120.00007 * 339.48398 * 16 14 11 19 19 H 1.48498 * 109.47247 * 179.72357 * 18 16 14 20 20 H 1.48503 * 109.47023 * 299.71868 * 18 16 14 21 21 H 1.48498 * 109.47281 * 59.72102 * 18 16 14 22 22 C 1.52995 * 109.47308 * 60.00027 * 9 8 7 23 23 C 1.53002 * 109.47499 * 300.00220 * 22 9 8 24 24 H 1.09000 * 109.47271 * 59.99595 * 1 2 3 25 25 H 1.09001 * 109.47250 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46676 * 299.99863 * 1 2 3 27 27 H 1.09013 * 109.47123 * 180.02562 * 6 5 3 28 28 H 1.09004 * 109.46862 * 299.99487 * 6 5 3 29 29 H 1.08992 * 109.47242 * 60.00259 * 6 5 3 30 30 H 1.08994 * 109.47289 * 59.99982 * 7 5 3 31 31 H 1.09003 * 109.46683 * 299.99591 * 7 5 3 32 32 H 1.09000 * 109.46984 * 179.97438 * 8 7 5 33 33 H 1.09002 * 109.47244 * 59.99572 * 8 7 5 34 34 H 1.09002 * 109.47078 * 300.00099 * 9 8 7 35 35 H 1.00895 * 110.99805 * 274.85224 * 10 9 8 36 36 H 1.08997 * 109.46483 * 175.64551 * 13 11 10 37 37 H 1.08995 * 109.46995 * 295.64567 * 13 11 10 38 38 H 1.09004 * 109.46453 * 55.65026 * 13 11 10 39 39 H 0.96997 * 120.00269 * 355.21825 * 17 16 14 40 40 H 1.09002 * 109.46992 * 60.00019 * 22 9 8 41 41 H 1.09005 * 109.47445 * 179.97438 * 22 9 8 42 42 H 1.08997 * 109.46997 * 300.00348 * 23 22 9 43 43 H 1.09000 * 109.47457 * 179.97438 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.1129 0.5814 -1.2501 7 6 4.0002 2.7420 0.0002 8 6 5.5281 2.8220 -0.0011 9 6 6.0762 2.1275 1.2472 10 7 7.5431 2.2048 1.2464 11 6 8.0709 2.2099 2.6173 12 1 7.2661 2.4403 3.3156 13 6 8.6521 0.8331 2.9452 14 6 9.1523 3.2529 2.7355 15 1 9.4753 3.7974 1.8605 16 6 9.7292 3.5120 3.9607 17 7 10.9096 4.0885 4.0228 18 14 8.8378 3.0371 5.5320 19 1 9.6668 3.4146 6.7049 20 1 7.5358 3.7484 5.5968 21 1 8.6020 1.5710 5.5437 22 6 5.6423 0.6604 1.2466 23 6 4.1144 0.5802 1.2478 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 5.2015 0.6380 -1.2503 28 1 3.8038 -0.4639 -1.2501 29 1 3.7229 1.0757 -2.1398 30 1 3.6109 3.2355 0.8906 31 1 3.6102 3.2366 -0.8894 32 1 5.8372 3.8672 -0.0010 33 1 5.9171 2.3285 -0.8917 34 1 5.6872 2.6210 2.1379 35 1 7.9445 1.4524 0.7072 36 1 9.1125 0.8591 3.9328 37 1 7.8545 0.0904 2.9355 38 1 9.4035 0.5694 2.2008 39 1 11.4050 4.2684 3.2085 40 1 6.0313 0.1668 0.3559 41 1 6.0332 0.1654 2.1357 42 1 3.7254 1.0738 2.1384 43 1 3.8053 -0.4650 1.2469 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168761376.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:55 Heat of formation + Delta-G solvation = -103.605416 kcal Electronic energy + Delta-G solvation = -21764.415893 eV Core-core repulsion = 18615.908067 eV Total energy + Delta-G solvation = -3148.507826 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.07733 -38.93710 -36.66766 -35.72557 -32.83089 -31.13715 -30.66744 -28.40214 -27.81042 -26.17417 -24.65240 -22.99915 -22.55705 -20.65823 -20.07582 -18.70375 -17.48136 -17.31637 -17.01460 -16.50384 -15.17094 -14.71295 -14.62255 -14.14697 -13.89171 -13.62654 -13.36809 -13.08318 -12.92270 -12.51618 -12.42977 -12.20709 -12.10072 -11.91433 -11.78731 -11.72802 -11.18097 -11.05298 -11.00174 -10.97487 -10.84015 -10.56484 -10.23054 -10.07493 -10.04700 -9.92662 -9.55896 -8.93073 -8.17268 -7.39314 -6.34397 -3.93207 2.06533 2.53604 3.39196 3.45563 3.62343 4.37861 4.54656 4.55434 4.59380 4.84616 4.91927 4.92786 5.07283 5.13209 5.24918 5.28970 5.31001 5.38538 5.55346 5.57063 5.61676 5.73076 5.85217 5.91533 5.96396 6.05253 6.09877 6.19964 6.22084 6.26497 6.35081 6.47057 6.60288 6.63777 6.67414 6.88352 7.20669 7.59810 7.90992 8.35365 8.40238 8.53442 9.11833 9.72003 11.01176 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.032858 B = 0.004249 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.952006 B = 6587.868547 C = 6752.469595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.357 6.357 3 C 0.470 3.530 4 O -0.507 6.507 5 C -0.047 4.047 6 C -0.144 4.144 7 C -0.098 4.098 8 C -0.105 4.105 9 C 0.085 3.915 10 N -0.669 5.669 11 C 0.189 3.811 12 H 0.018 0.982 13 C -0.175 4.175 14 C -0.581 4.581 15 H 0.064 0.936 16 C 0.029 3.971 17 N -0.908 5.908 18 Si 1.036 2.964 19 H -0.286 1.286 20 H -0.285 1.285 21 H -0.278 1.278 22 C -0.149 4.149 23 C -0.102 4.102 24 H 0.061 0.939 25 H 0.100 0.900 26 H 0.061 0.939 27 H 0.082 0.918 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.326 0.674 36 H 0.057 0.943 37 H 0.021 0.979 38 H 0.046 0.954 39 H 0.268 0.732 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.057 -10.694 -8.826 22.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.274 6.274 3 C 0.312 3.688 4 O -0.394 6.394 5 C -0.048 4.048 6 C -0.201 4.201 7 C -0.136 4.136 8 C -0.143 4.143 9 C -0.026 4.026 10 N -0.297 5.297 11 C 0.080 3.920 12 H 0.036 0.964 13 C -0.234 4.234 14 C -0.620 4.620 15 H 0.082 0.918 16 C -0.176 4.176 17 N -0.542 5.542 18 Si 0.865 3.135 19 H -0.212 1.212 20 H -0.212 1.212 21 H -0.205 1.205 22 C -0.188 4.188 23 C -0.141 4.141 24 H 0.080 0.920 25 H 0.118 0.882 26 H 0.080 0.920 27 H 0.101 0.899 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.143 0.857 36 H 0.076 0.924 37 H 0.039 0.961 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -18.148 -9.601 -7.218 21.763 hybrid contribution -0.582 -1.013 -1.351 1.786 sum -18.729 -10.614 -8.569 23.171 Atomic orbital electron populations 1.23251 0.76789 1.03537 1.02458 1.86527 1.23041 1.33734 1.84057 1.23999 0.92059 0.81109 0.71585 1.90647 1.67170 1.36428 1.45139 1.20618 0.85613 0.99483 0.99102 1.21963 1.02888 1.00340 0.94892 1.21511 0.96960 0.91914 1.03220 1.21573 0.92226 1.02141 0.98373 1.21746 0.90142 0.92720 0.98035 1.60740 1.02443 1.50504 1.15995 1.19592 0.94701 0.92905 0.84784 0.96421 1.22862 0.99483 0.98837 1.02258 1.22024 1.20671 1.22459 0.96800 0.91827 1.25637 0.95407 0.95041 1.01480 1.70829 1.10273 1.41249 1.31873 0.84191 0.76061 0.76562 0.76726 1.21170 1.21170 1.20475 1.22468 0.94236 0.99589 1.02496 1.21543 0.96860 1.00334 0.95336 0.92038 0.88201 0.91979 0.89880 0.91566 0.92326 0.91105 0.91264 0.90601 0.91797 0.90929 0.85701 0.92443 0.96050 0.93468 0.92197 0.91394 0.91281 0.91503 0.90974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 101.05 1.07 1.34 16 2 O -0.36 -3.92 10.37 -39.26 -0.41 -4.33 16 3 C 0.47 5.94 6.55 36.00 0.24 6.17 16 4 O -0.51 -7.67 15.73 -18.74 -0.29 -7.97 16 5 C -0.05 -0.55 0.71 -155.66 -0.11 -0.66 16 6 C -0.14 -1.41 7.71 37.16 0.29 -1.13 16 7 C -0.10 -1.26 4.02 -26.73 -0.11 -1.36 16 8 C -0.11 -1.48 5.25 -26.73 -0.14 -1.62 16 9 C 0.08 1.36 2.46 -67.72 -0.17 1.19 16 10 N -0.67 -13.16 6.11 -100.95 -0.62 -13.78 16 11 C 0.19 4.37 2.29 -68.86 -0.16 4.22 16 12 H 0.02 0.43 5.77 -51.92 -0.30 0.13 16 13 C -0.18 -3.71 8.81 37.16 0.33 -3.39 16 14 C -0.58 -16.38 9.09 -34.44 -0.31 -16.69 16 15 H 0.06 1.98 8.06 -52.49 -0.42 1.55 16 16 C 0.03 0.84 5.26 -17.82 -0.09 0.75 16 17 N -0.91 -28.05 13.70 55.43 0.76 -27.29 16 18 Si 1.04 25.16 26.38 -169.99 -4.48 20.68 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.21 5.84 56.52 0.33 -5.88 16 22 C -0.15 -1.96 4.92 -26.73 -0.13 -2.09 16 23 C -0.10 -1.20 4.66 -26.73 -0.12 -1.32 16 24 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 25 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 27 H 0.08 0.81 4.81 -51.92 -0.25 0.56 16 28 H 0.07 0.59 8.11 -51.93 -0.42 0.17 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 31 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 32 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.06 0.82 6.43 -51.93 -0.33 0.49 16 34 H 0.07 1.30 7.25 -51.93 -0.38 0.92 16 35 H 0.33 5.92 7.83 -39.29 -0.31 5.61 16 36 H 0.06 1.30 5.04 -51.93 -0.26 1.03 16 37 H 0.02 0.38 6.60 -51.93 -0.34 0.04 16 38 H 0.05 0.98 8.06 -51.93 -0.42 0.56 16 39 H 0.27 8.27 8.73 -40.82 -0.36 7.91 16 40 H 0.07 0.81 6.41 -51.93 -0.33 0.48 16 41 H 0.07 0.97 6.60 -51.93 -0.34 0.63 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.07 0.76 8.11 -51.93 -0.42 0.34 16 LS Contribution 327.47 15.07 4.93 4.93 Total: -1.00 -31.51 327.47 -6.67 -38.18 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -7.13 Total: 4.16 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: 0.57 Total: -14.59 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: 0.14 Total: -41.07 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: -0.70 Total: -12.29 kcal Atomic # 14 Polarization: 25.16 SS G_CDS: -4.48 Total: 20.68 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.51 -6.67 -38.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168761376.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.424 kcal (2) G-P(sol) polarization free energy of solvation -31.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds