Wall clock time and date at job start Mon Mar 30 2020 00:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34232 * 117.00025 * 2 1 4 4 O 1.20815 * 120.00273 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99583 * 180.02562 * 3 2 1 6 6 C 1.52996 * 109.47330 * 60.00010 * 5 3 2 7 7 C 1.53004 * 109.46967 * 180.02562 * 5 3 2 8 8 C 1.52998 * 109.47086 * 180.02562 * 7 5 3 9 9 C 1.53000 * 109.47083 * 299.99575 * 8 7 5 10 10 N 1.46899 * 109.47294 * 180.02562 * 9 8 7 11 11 C 1.46901 * 111.00393 * 150.89489 * 10 9 8 12 12 H 1.09007 * 109.46842 * 343.96792 * 11 10 9 13 13 C 1.53004 * 109.47092 * 103.96480 * 11 10 9 14 14 C 1.50698 * 109.47544 * 223.96999 * 11 10 9 15 15 H 1.08002 * 119.99891 * 355.14532 * 14 11 10 16 16 C 1.37879 * 120.00152 * 175.14323 * 14 11 10 17 17 N 1.31515 * 119.99582 * 159.20323 * 16 14 11 18 18 Si 1.86799 * 120.00007 * 339.48398 * 16 14 11 19 19 H 1.48498 * 109.47247 * 179.72357 * 18 16 14 20 20 H 1.48503 * 109.47023 * 299.71868 * 18 16 14 21 21 H 1.48498 * 109.47281 * 59.72102 * 18 16 14 22 22 C 1.52995 * 109.47308 * 60.00027 * 9 8 7 23 23 C 1.53002 * 109.47499 * 300.00220 * 22 9 8 24 24 H 1.09000 * 109.47271 * 59.99595 * 1 2 3 25 25 H 1.09001 * 109.47250 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46676 * 299.99863 * 1 2 3 27 27 H 1.09013 * 109.47123 * 180.02562 * 6 5 3 28 28 H 1.09004 * 109.46862 * 299.99487 * 6 5 3 29 29 H 1.08992 * 109.47242 * 60.00259 * 6 5 3 30 30 H 1.08994 * 109.47289 * 59.99982 * 7 5 3 31 31 H 1.09003 * 109.46683 * 299.99591 * 7 5 3 32 32 H 1.09000 * 109.46984 * 179.97438 * 8 7 5 33 33 H 1.09002 * 109.47244 * 59.99572 * 8 7 5 34 34 H 1.09002 * 109.47078 * 300.00099 * 9 8 7 35 35 H 1.00895 * 110.99805 * 274.85224 * 10 9 8 36 36 H 1.08997 * 109.46483 * 175.64551 * 13 11 10 37 37 H 1.08995 * 109.46995 * 295.64567 * 13 11 10 38 38 H 1.09004 * 109.46453 * 55.65026 * 13 11 10 39 39 H 0.96997 * 120.00269 * 355.21825 * 17 16 14 40 40 H 1.09002 * 109.46992 * 60.00019 * 22 9 8 41 41 H 1.09005 * 109.47445 * 179.97438 * 22 9 8 42 42 H 1.08997 * 109.46997 * 300.00348 * 23 22 9 43 43 H 1.09000 * 109.47457 * 179.97438 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.1129 0.5814 -1.2501 7 6 4.0002 2.7420 0.0002 8 6 5.5281 2.8220 -0.0011 9 6 6.0762 2.1275 1.2472 10 7 7.5431 2.2048 1.2464 11 6 8.0709 2.2099 2.6173 12 1 7.2661 2.4403 3.3156 13 6 8.6521 0.8331 2.9452 14 6 9.1523 3.2529 2.7355 15 1 9.4753 3.7974 1.8605 16 6 9.7292 3.5120 3.9607 17 7 10.9096 4.0885 4.0228 18 14 8.8378 3.0371 5.5320 19 1 9.6668 3.4146 6.7049 20 1 7.5358 3.7484 5.5968 21 1 8.6020 1.5710 5.5437 22 6 5.6423 0.6604 1.2466 23 6 4.1144 0.5802 1.2478 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 5.2015 0.6380 -1.2503 28 1 3.8038 -0.4639 -1.2501 29 1 3.7229 1.0757 -2.1398 30 1 3.6109 3.2355 0.8906 31 1 3.6102 3.2366 -0.8894 32 1 5.8372 3.8672 -0.0010 33 1 5.9171 2.3285 -0.8917 34 1 5.6872 2.6210 2.1379 35 1 7.9445 1.4524 0.7072 36 1 9.1125 0.8591 3.9328 37 1 7.8545 0.0904 2.9355 38 1 9.4035 0.5694 2.2008 39 1 11.4050 4.2684 3.2085 40 1 6.0313 0.1668 0.3559 41 1 6.0332 0.1654 2.1357 42 1 3.7254 1.0738 2.1384 43 1 3.8053 -0.4650 1.2469 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168761376.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:55 Heat of formation + Delta-G solvation = -124.564384 kcal Electronic energy + Delta-G solvation = -21765.324743 eV Core-core repulsion = 18615.908067 eV Total energy + Delta-G solvation = -3149.416675 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.03649 -40.03726 -37.71248 -37.17070 -34.70052 -32.67718 -31.77127 -29.69387 -28.56999 -27.22123 -26.67870 -24.08029 -23.61743 -21.92524 -21.76374 -19.92957 -19.29066 -18.40272 -17.97534 -17.37678 -16.53910 -16.18855 -15.65871 -15.49159 -15.16637 -14.85459 -14.73860 -14.33379 -14.07091 -13.81755 -13.69575 -13.48899 -13.23138 -13.10968 -13.04254 -12.93659 -12.65765 -12.42530 -12.16891 -12.03258 -11.99770 -11.81786 -11.79034 -11.61973 -11.33418 -11.12048 -11.08820 -10.93780 -10.35107 -9.04428 -8.56759 -6.23782 1.11239 1.45152 1.52932 1.70983 1.71687 2.52593 3.08572 3.36539 3.56059 3.64744 3.75567 4.04644 4.11076 4.25750 4.29750 4.31327 4.37866 4.43623 4.51776 4.57921 4.65760 4.68656 4.72811 4.77378 4.83758 4.87519 4.95083 5.02282 5.06150 5.12116 5.16680 5.18350 5.23367 5.37723 5.44221 5.51911 5.55400 5.99512 6.15078 6.51271 6.67963 6.82130 6.91266 7.52230 8.69870 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.032858 B = 0.004249 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.952006 B = 6587.868547 C = 6752.469595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.356 6.356 3 C 0.473 3.527 4 O -0.539 6.539 5 C -0.045 4.045 6 C -0.141 4.141 7 C -0.092 4.092 8 C -0.097 4.097 9 C 0.084 3.916 10 N -0.684 5.684 11 C 0.192 3.808 12 H 0.017 0.983 13 C -0.168 4.168 14 C -0.586 4.586 15 H 0.017 0.983 16 C -0.023 4.023 17 N -0.943 5.943 18 Si 1.077 2.923 19 H -0.291 1.291 20 H -0.272 1.272 21 H -0.241 1.241 22 C -0.139 4.139 23 C -0.097 4.097 24 H 0.061 0.939 25 H 0.133 0.867 26 H 0.058 0.942 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.052 0.948 33 H 0.080 0.920 34 H 0.050 0.950 35 H 0.336 0.664 36 H 0.043 0.957 37 H 0.060 0.940 38 H 0.045 0.955 39 H 0.251 0.749 40 H 0.087 0.913 41 H 0.066 0.934 42 H 0.057 0.943 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.220 -13.612 -9.020 25.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.272 6.272 3 C 0.317 3.683 4 O -0.429 6.429 5 C -0.046 4.046 6 C -0.198 4.198 7 C -0.130 4.130 8 C -0.135 4.135 9 C -0.026 4.026 10 N -0.314 5.314 11 C 0.083 3.917 12 H 0.035 0.965 13 C -0.226 4.226 14 C -0.624 4.624 15 H 0.036 0.964 16 C -0.221 4.221 17 N -0.579 5.579 18 Si 0.899 3.101 19 H -0.217 1.217 20 H -0.198 1.198 21 H -0.165 1.165 22 C -0.177 4.177 23 C -0.135 4.135 24 H 0.080 0.920 25 H 0.151 0.849 26 H 0.077 0.923 27 H 0.104 0.896 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.068 0.932 35 H 0.154 0.846 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.106 0.894 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -20.332 -12.554 -7.449 25.029 hybrid contribution 0.041 -0.054 -1.415 1.417 sum -20.291 -12.608 -8.864 25.480 Atomic orbital electron populations 1.23555 0.75098 1.05728 1.02348 1.86507 1.24680 1.32555 1.83468 1.24110 0.92319 0.81153 0.70736 1.90641 1.67892 1.37546 1.46773 1.20583 0.85360 0.98448 1.00223 1.21972 1.02934 1.01020 0.93869 1.21397 0.95710 0.93283 1.02602 1.21463 0.93129 1.00714 0.98177 1.21753 0.87731 0.95187 0.97941 1.60512 1.04876 1.51680 1.14301 1.19372 0.93125 0.92493 0.86741 0.96505 1.22688 1.00472 0.98197 1.01285 1.22289 1.21783 1.23192 0.95148 0.96411 1.27071 0.95224 0.94523 1.05254 1.70960 1.11927 1.44082 1.30955 0.83673 0.75175 0.78773 0.72458 1.21699 1.19809 1.16483 1.22325 0.95269 0.96852 1.03299 1.21500 0.95597 1.01496 0.94914 0.91999 0.84880 0.92343 0.89556 0.90055 0.91893 0.92734 0.90983 0.92901 0.90127 0.93174 0.84563 0.93809 0.92168 0.93616 0.93977 0.89426 0.91579 0.92395 0.88828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.54 16 2 O -0.36 -6.78 10.37 -51.44 -0.53 -7.31 16 3 C 0.47 10.97 6.55 71.24 0.47 11.44 16 4 O -0.54 -15.76 15.73 22.00 0.35 -15.41 16 5 C -0.05 -0.94 0.71 -52.93 -0.04 -0.97 16 6 C -0.14 -2.28 7.71 71.98 0.55 -1.73 16 7 C -0.09 -2.26 4.02 30.60 0.12 -2.14 16 8 C -0.10 -2.63 5.25 30.59 0.16 -2.47 16 9 C 0.08 2.59 2.46 44.91 0.11 2.70 16 10 N -0.68 -26.36 6.11 -473.30 -2.89 -29.26 16 11 C 0.19 8.73 2.29 44.17 0.10 8.83 16 12 H 0.02 0.79 5.77 -2.38 -0.01 0.77 16 13 C -0.17 -6.67 8.81 71.98 0.63 -6.03 16 14 C -0.59 -33.79 9.09 25.60 0.23 -33.56 16 15 H 0.02 1.15 8.06 -2.91 -0.02 1.13 16 16 C -0.02 -1.36 5.26 84.66 0.45 -0.91 16 17 N -0.94 -60.20 13.70 21.45 0.29 -59.90 16 18 Si 1.08 50.21 26.38 68.60 1.81 52.02 16 19 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 20 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 21 H -0.24 -9.74 5.84 99.48 0.58 -9.16 16 22 C -0.14 -3.20 4.92 30.59 0.15 -3.04 16 23 C -0.10 -1.97 4.66 30.60 0.14 -1.82 16 24 H 0.06 0.84 8.13 -2.39 -0.02 0.82 16 25 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.06 0.84 8.13 -2.39 -0.02 0.82 16 27 H 0.09 1.35 4.81 -2.38 -0.01 1.34 16 28 H 0.08 1.10 8.11 -2.39 -0.02 1.08 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.05 1.51 8.10 -2.39 -0.02 1.49 16 31 H 0.07 1.74 8.10 -2.39 -0.02 1.72 16 32 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.08 1.92 6.43 -2.39 -0.02 1.91 16 34 H 0.05 1.77 7.25 -2.39 -0.02 1.75 16 35 H 0.34 11.62 7.83 -89.70 -0.70 10.91 16 36 H 0.04 1.85 5.04 -2.39 -0.01 1.84 16 37 H 0.06 1.93 6.60 -2.39 -0.02 1.91 16 38 H 0.04 1.80 8.06 -2.38 -0.02 1.78 16 39 H 0.25 16.34 8.73 -92.71 -0.81 15.53 16 40 H 0.09 1.71 6.41 -2.39 -0.02 1.70 16 41 H 0.07 1.60 6.60 -2.38 -0.02 1.58 16 42 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.09 1.56 8.11 -2.39 -0.02 1.54 16 Total: -1.00 -70.65 327.47 3.44 -67.22 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: 0.13 Total: 20.82 kcal Atomic # 6 Polarization: -32.45 SS G_CDS: 4.28 Total: -28.17 kcal Atomic # 7 Polarization: -86.56 SS G_CDS: -2.60 Total: -89.16 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.19 Total: -22.72 kcal Atomic # 14 Polarization: 50.21 SS G_CDS: 1.81 Total: 52.02 kcal Total: -70.65 3.44 -67.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168761376.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.349 kcal (2) G-P(sol) polarization free energy of solvation -70.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds