Wall clock time and date at job start Mon Mar 30 2020 01:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46902 * 109.46601 * 2 1 4 4 C 1.46902 * 110.99831 * 294.48295 * 3 2 1 5 5 C 1.50700 * 109.47280 * 295.63244 * 4 3 2 6 6 H 1.08000 * 120.00018 * 354.97871 * 5 4 3 7 7 C 1.37880 * 120.00231 * 174.97297 * 5 4 3 8 8 N 1.31513 * 119.99633 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00048 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47098 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46885 * 120.00082 * 9 7 5 12 12 H 1.48495 * 109.47176 * 240.00046 * 9 7 5 13 13 C 1.46897 * 111.00202 * 58.43714 * 3 2 1 14 14 H 1.08997 * 109.47541 * 296.04448 * 13 3 2 15 15 C 1.52991 * 109.47070 * 176.04536 * 13 3 2 16 16 C 1.52998 * 109.51200 * 179.85873 * 15 13 3 17 17 C 1.53022 * 109.47052 * 60.14150 * 16 15 13 18 18 C 1.52962 * 109.43001 * 300.22507 * 17 16 15 19 19 C 1.52960 * 109.82014 * 59.69298 * 18 17 16 20 20 O 1.43707 * 109.41132 * 299.59638 * 18 17 16 21 21 C 1.44796 * 104.78988 * 215.84337 * 20 18 17 22 22 C 1.54915 * 101.72450 * 36.07268 * 21 20 18 23 23 O 1.43297 * 109.67541 * 180.26072 * 18 17 16 24 24 H 1.08993 * 109.47488 * 62.52159 * 1 2 3 25 25 H 1.09005 * 109.47068 * 182.52134 * 1 2 3 26 26 H 1.09000 * 109.47135 * 302.51644 * 1 2 3 27 27 H 1.08994 * 109.47361 * 240.00103 * 2 1 3 28 28 H 1.08997 * 109.47294 * 119.99313 * 2 1 3 29 29 H 1.08997 * 109.47263 * 55.63906 * 4 3 2 30 30 H 1.09006 * 109.47162 * 175.64172 * 4 3 2 31 31 H 0.97003 * 119.99985 * 180.02562 * 8 7 5 32 32 H 1.09004 * 109.46763 * 59.85004 * 15 13 3 33 33 H 1.09004 * 109.46592 * 299.86745 * 15 13 3 34 34 H 1.09005 * 109.46850 * 180.13622 * 16 15 13 35 35 H 1.08991 * 109.46883 * 300.13726 * 16 15 13 36 36 H 1.08997 * 109.47999 * 60.20923 * 17 16 15 37 37 H 1.08991 * 109.47575 * 180.23019 * 17 16 15 38 38 H 1.08999 * 109.47528 * 60.28852 * 19 18 17 39 39 H 1.08996 * 109.47510 * 180.30446 * 19 18 17 40 40 H 1.08995 * 110.98047 * 277.96173 * 21 20 18 41 41 H 1.09007 * 110.97463 * 154.18182 * 21 20 18 42 42 H 1.08997 * 110.69234 * 206.07836 * 22 21 20 43 43 H 1.09005 * 110.69426 * 82.87171 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0195 1.3850 0.0000 4 6 1.6591 2.0708 -1.2481 5 6 2.3577 1.4062 -2.4063 6 1 3.0669 0.6120 -2.2254 7 6 2.0914 1.8119 -3.6969 8 7 1.2281 2.7792 -3.9171 9 14 2.9568 0.9876 -5.1324 10 1 3.8725 -0.0637 -4.6209 11 1 1.9478 0.3704 -6.0304 12 1 3.7377 2.0003 -5.8873 13 6 1.5182 2.1207 1.1685 14 1 0.4323 2.1959 1.1121 15 6 2.1263 3.5244 1.1868 16 6 1.6020 4.2926 2.4016 17 6 1.9962 3.5530 3.6819 18 6 1.3946 2.1468 3.6629 19 6 1.9127 1.3774 2.4466 20 8 -0.0377 2.2409 3.5937 21 6 -0.5199 1.1385 4.3991 22 6 0.5311 1.0961 5.5364 23 8 1.7556 1.4513 4.8627 24 1 -0.3634 0.4741 -0.9116 25 1 -0.3633 -1.0267 0.0452 26 1 -0.3633 0.5524 0.8666 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8900 29 1 0.5804 2.0158 -1.3945 30 1 1.9652 3.1154 -1.1903 31 1 1.0404 3.0644 -4.8250 32 1 1.8477 4.0529 0.2750 33 1 3.2121 3.4492 1.2456 34 1 2.0338 5.2935 2.4126 35 1 0.5161 4.3660 2.3440 36 1 3.0823 3.4828 3.7414 37 1 1.6192 4.0980 4.5472 38 1 2.9985 1.2993 2.5015 39 1 1.4765 0.3786 2.4356 40 1 -0.5168 0.2089 3.8300 41 1 -1.5139 1.3492 4.7938 42 1 0.6008 0.0939 5.9592 43 1 0.2913 1.8259 6.3098 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169950257.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:23 Heat of formation + Delta-G solvation = -91.171537 kcal Electronic energy + Delta-G solvation = -22566.204803 eV Core-core repulsion = 19418.236150 eV Total energy + Delta-G solvation = -3147.968653 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.85065 -38.11893 -35.27980 -34.90434 -32.57062 -30.68064 -29.98551 -29.08256 -27.51610 -25.92689 -23.38755 -23.37938 -22.13804 -21.62238 -20.00723 -18.53455 -17.06687 -16.76501 -16.24338 -15.52263 -15.36230 -14.78734 -14.59603 -14.13094 -13.92818 -13.61875 -13.36835 -13.03870 -12.85941 -12.54211 -12.41577 -12.03912 -11.91209 -11.81967 -11.48569 -11.37224 -11.21909 -10.90798 -10.69621 -10.63214 -10.44082 -10.31263 -10.22284 -10.03574 -9.87168 -9.45426 -9.36700 -9.02477 -8.37186 -7.07795 -5.98310 -3.98459 3.32944 3.36901 3.40589 3.45545 3.95235 4.45474 4.47869 4.72004 4.78431 4.85881 5.04264 5.19126 5.29106 5.35775 5.37939 5.43115 5.56712 5.62851 5.67928 5.69745 5.83991 5.89798 5.99847 6.01064 6.08954 6.17377 6.22009 6.27469 6.43971 6.51332 6.54178 6.70742 6.78984 6.88273 6.99976 7.16477 7.42505 7.52396 7.87452 8.18615 8.29538 8.64752 9.10250 9.65259 11.12459 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.032076 B = 0.005032 C = 0.004726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.728586 B = 5562.704200 C = 5923.495062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.059 3.941 3 N -0.532 5.532 4 C 0.187 3.813 5 C -0.503 4.503 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.899 5.899 9 Si 0.894 3.106 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.092 3.908 14 H 0.043 0.957 15 C -0.116 4.116 16 C -0.113 4.113 17 C -0.116 4.116 18 C 0.260 3.740 19 C -0.126 4.126 20 O -0.364 6.364 21 C 0.013 3.987 22 C 0.021 3.979 23 O -0.380 6.380 24 H 0.065 0.935 25 H 0.043 0.957 26 H 0.046 0.954 27 H 0.081 0.919 28 H 0.051 0.949 29 H -0.001 1.001 30 H 0.032 0.968 31 H 0.259 0.741 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.105 0.895 42 H 0.096 0.904 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.739 -1.805 17.605 17.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.069 4.069 3 N -0.256 5.256 4 C 0.062 3.938 5 C -0.542 4.542 6 H 0.081 0.919 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.722 3.278 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.017 4.017 14 H 0.060 0.940 15 C -0.154 4.154 16 C -0.151 4.151 17 C -0.154 4.154 18 C 0.183 3.817 19 C -0.165 4.165 20 O -0.284 6.284 21 C -0.063 4.063 22 C -0.056 4.056 23 O -0.301 6.301 24 H 0.084 0.916 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.100 0.900 28 H 0.069 0.931 29 H 0.017 0.983 30 H 0.050 0.950 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.123 0.877 42 H 0.114 0.886 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.199 -1.591 17.417 17.627 hybrid contribution -0.682 -0.549 -0.860 1.227 sum -2.880 -2.139 16.557 16.941 Atomic orbital electron populations 1.22390 0.99585 1.00558 1.02146 1.21996 0.91957 0.91744 1.01242 1.62365 1.58618 1.01558 1.03024 1.19821 0.94883 0.94509 0.84614 1.21218 1.23715 1.19041 0.90198 0.91943 1.24969 0.95415 0.95324 0.98893 1.69971 1.34538 1.28682 1.20719 0.86499 0.79437 0.79403 0.82431 1.19701 1.21228 1.21085 1.21360 0.97211 0.93079 0.90007 0.93955 1.21677 1.00887 0.95083 0.97762 1.21466 1.01645 0.98375 0.93585 1.21821 1.01199 0.93175 0.99169 1.23428 0.80189 0.92740 0.85340 1.22174 1.02430 0.98927 0.92928 1.89295 1.19393 1.48778 1.70931 1.24341 0.99206 0.91602 0.91176 1.24138 0.84004 1.01643 0.95767 1.88884 1.28738 1.76433 1.36089 0.91602 0.93743 0.93464 0.90033 0.93069 0.98336 0.95015 0.93101 0.90646 0.91413 0.91616 0.91451 0.90116 0.91544 0.89901 0.91458 0.90777 0.87713 0.88618 0.90940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.49 9.22 37.16 0.34 -3.15 16 2 C 0.06 1.17 5.38 -3.82 -0.02 1.15 16 3 N -0.53 -11.49 4.58 -228.08 -1.05 -12.54 16 4 C 0.19 4.82 4.33 -4.97 -0.02 4.80 16 5 C -0.50 -14.09 8.31 -34.44 -0.29 -14.37 16 6 H 0.06 1.75 7.22 -52.49 -0.38 1.37 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 9 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 10 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 C 0.09 1.71 1.25 -67.71 -0.08 1.63 16 14 H 0.04 0.85 5.99 -51.93 -0.31 0.54 16 15 C -0.12 -2.04 4.99 -26.74 -0.13 -2.17 16 16 C -0.11 -1.63 5.78 -26.72 -0.15 -1.78 16 17 C -0.12 -1.57 5.34 -26.74 -0.14 -1.71 16 18 C 0.26 3.75 1.03 -26.77 -0.03 3.72 16 19 C -0.13 -2.03 4.20 -26.74 -0.11 -2.15 16 20 O -0.36 -5.24 9.66 -59.04 -0.57 -5.81 16 21 C 0.01 0.14 7.91 38.17 0.30 0.44 16 22 C 0.02 0.21 8.07 38.17 0.31 0.52 16 23 O -0.38 -5.21 10.87 -59.04 -0.64 -5.85 16 24 H 0.06 1.41 6.57 -51.93 -0.34 1.07 16 25 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.84 6.33 -51.93 -0.33 0.51 16 27 H 0.08 1.76 6.71 -51.93 -0.35 1.41 16 28 H 0.05 0.90 6.33 -51.93 -0.33 0.57 16 29 H 0.00 -0.03 6.31 -51.93 -0.33 -0.36 16 30 H 0.03 0.87 5.89 -51.93 -0.31 0.56 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.08 1.48 6.22 -51.93 -0.32 1.15 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.07 1.02 7.69 -51.93 -0.40 0.62 16 36 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.07 1.08 6.38 -51.93 -0.33 0.75 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.10 0.84 8.14 -51.92 -0.42 0.41 16 42 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 321.90 15.07 4.85 4.85 Total: -1.00 -30.54 321.90 -8.91 -39.45 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -7.09 Total: 0.79 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: -0.13 Total: -11.62 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: -0.31 Total: -38.54 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: -1.21 Total: -11.66 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.54 -8.91 -39.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169950257.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.722 kcal (2) G-P(sol) polarization free energy of solvation -30.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds