Wall clock time and date at job start Mon Mar 30 2020 01:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46902 * 109.46601 * 2 1 4 4 C 1.46902 * 110.99831 * 294.48295 * 3 2 1 5 5 C 1.50700 * 109.47280 * 295.63244 * 4 3 2 6 6 H 1.08000 * 120.00018 * 354.97871 * 5 4 3 7 7 C 1.37880 * 120.00231 * 174.97297 * 5 4 3 8 8 N 1.31513 * 119.99633 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00048 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47098 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46885 * 120.00082 * 9 7 5 12 12 H 1.48495 * 109.47176 * 240.00046 * 9 7 5 13 13 C 1.46897 * 111.00202 * 58.43714 * 3 2 1 14 14 H 1.08997 * 109.47541 * 296.04448 * 13 3 2 15 15 C 1.52991 * 109.47070 * 176.04536 * 13 3 2 16 16 C 1.52998 * 109.51200 * 179.85873 * 15 13 3 17 17 C 1.53022 * 109.47052 * 60.14150 * 16 15 13 18 18 C 1.52962 * 109.43001 * 300.22507 * 17 16 15 19 19 C 1.52960 * 109.82014 * 59.69298 * 18 17 16 20 20 O 1.43707 * 109.41132 * 299.59638 * 18 17 16 21 21 C 1.44796 * 104.78988 * 215.84337 * 20 18 17 22 22 C 1.54915 * 101.72450 * 36.07268 * 21 20 18 23 23 O 1.43297 * 109.67541 * 180.26072 * 18 17 16 24 24 H 1.08993 * 109.47488 * 62.52159 * 1 2 3 25 25 H 1.09005 * 109.47068 * 182.52134 * 1 2 3 26 26 H 1.09000 * 109.47135 * 302.51644 * 1 2 3 27 27 H 1.08994 * 109.47361 * 240.00103 * 2 1 3 28 28 H 1.08997 * 109.47294 * 119.99313 * 2 1 3 29 29 H 1.08997 * 109.47263 * 55.63906 * 4 3 2 30 30 H 1.09006 * 109.47162 * 175.64172 * 4 3 2 31 31 H 0.97003 * 119.99985 * 180.02562 * 8 7 5 32 32 H 1.09004 * 109.46763 * 59.85004 * 15 13 3 33 33 H 1.09004 * 109.46592 * 299.86745 * 15 13 3 34 34 H 1.09005 * 109.46850 * 180.13622 * 16 15 13 35 35 H 1.08991 * 109.46883 * 300.13726 * 16 15 13 36 36 H 1.08997 * 109.47999 * 60.20923 * 17 16 15 37 37 H 1.08991 * 109.47575 * 180.23019 * 17 16 15 38 38 H 1.08999 * 109.47528 * 60.28852 * 19 18 17 39 39 H 1.08996 * 109.47510 * 180.30446 * 19 18 17 40 40 H 1.08995 * 110.98047 * 277.96173 * 21 20 18 41 41 H 1.09007 * 110.97463 * 154.18182 * 21 20 18 42 42 H 1.08997 * 110.69234 * 206.07836 * 22 21 20 43 43 H 1.09005 * 110.69426 * 82.87171 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0195 1.3850 0.0000 4 6 1.6591 2.0708 -1.2481 5 6 2.3577 1.4062 -2.4063 6 1 3.0669 0.6120 -2.2254 7 6 2.0914 1.8119 -3.6969 8 7 1.2281 2.7792 -3.9171 9 14 2.9568 0.9876 -5.1324 10 1 3.8725 -0.0637 -4.6209 11 1 1.9478 0.3704 -6.0304 12 1 3.7377 2.0003 -5.8873 13 6 1.5182 2.1207 1.1685 14 1 0.4323 2.1959 1.1121 15 6 2.1263 3.5244 1.1868 16 6 1.6020 4.2926 2.4016 17 6 1.9962 3.5530 3.6819 18 6 1.3946 2.1468 3.6629 19 6 1.9127 1.3774 2.4466 20 8 -0.0377 2.2409 3.5937 21 6 -0.5199 1.1385 4.3991 22 6 0.5311 1.0961 5.5364 23 8 1.7556 1.4513 4.8627 24 1 -0.3634 0.4741 -0.9116 25 1 -0.3633 -1.0267 0.0452 26 1 -0.3633 0.5524 0.8666 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8900 29 1 0.5804 2.0158 -1.3945 30 1 1.9652 3.1154 -1.1903 31 1 1.0404 3.0644 -4.8250 32 1 1.8477 4.0529 0.2750 33 1 3.2121 3.4492 1.2456 34 1 2.0338 5.2935 2.4126 35 1 0.5161 4.3660 2.3440 36 1 3.0823 3.4828 3.7414 37 1 1.6192 4.0980 4.5472 38 1 2.9985 1.2993 2.5015 39 1 1.4765 0.3786 2.4356 40 1 -0.5168 0.2089 3.8300 41 1 -1.5139 1.3492 4.7938 42 1 0.6008 0.0939 5.9592 43 1 0.2913 1.8259 6.3098 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169950257.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:22 Heat of formation + Delta-G solvation = -111.427962 kcal Electronic energy + Delta-G solvation = -22567.083187 eV Core-core repulsion = 19418.236150 eV Total energy + Delta-G solvation = -3148.847037 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.91880 -39.61157 -36.66147 -35.92736 -34.68595 -31.90889 -31.36179 -30.65198 -28.72926 -27.78609 -25.09157 -24.30471 -23.67751 -22.94168 -21.35577 -20.05360 -18.43107 -18.05483 -17.76280 -16.80850 -16.63380 -16.52421 -16.12934 -15.48556 -15.25845 -14.85420 -14.73434 -14.56206 -13.99240 -13.94339 -13.69528 -13.50245 -13.43850 -13.18503 -13.05737 -12.86835 -12.66457 -12.56180 -12.39858 -12.21347 -12.02882 -11.70038 -11.66486 -11.47192 -11.19148 -11.15924 -10.99791 -10.55592 -10.40090 -8.88481 -8.17326 -6.26005 1.40207 1.41023 1.54372 2.39644 2.45802 2.94454 3.15360 3.29840 3.63514 3.73618 3.92004 3.99549 4.08958 4.17397 4.23740 4.29459 4.31780 4.40520 4.49080 4.49950 4.56847 4.60783 4.67884 4.76139 4.84299 4.91310 4.96656 4.99255 5.01317 5.15337 5.17408 5.21846 5.24721 5.30678 5.42454 5.46538 5.53355 5.71133 6.12605 6.17592 6.42072 6.73185 6.91703 7.43068 8.93712 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.032076 B = 0.005032 C = 0.004726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.728586 B = 5562.704200 C = 5923.495062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.058 3.942 3 N -0.539 5.539 4 C 0.205 3.795 5 C -0.518 4.518 6 H 0.060 0.940 7 C 0.003 3.997 8 N -0.935 5.935 9 Si 0.965 3.035 10 H -0.264 1.264 11 H -0.280 1.280 12 H -0.279 1.279 13 C 0.097 3.903 14 H 0.026 0.974 15 C -0.115 4.115 16 C -0.103 4.103 17 C -0.113 4.113 18 C 0.263 3.737 19 C -0.118 4.118 20 O -0.385 6.385 21 C 0.006 3.994 22 C 0.018 3.982 23 O -0.394 6.394 24 H 0.028 0.972 25 H 0.073 0.927 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.080 0.920 29 H -0.031 1.031 30 H 0.009 0.991 31 H 0.263 0.737 32 H 0.044 0.956 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.058 0.942 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.131 0.869 42 H 0.120 0.880 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.431 -2.857 19.366 19.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.070 4.070 3 N -0.262 5.262 4 C 0.079 3.921 5 C -0.556 4.556 6 H 0.078 0.922 7 C -0.195 4.195 8 N -0.576 5.576 9 Si 0.790 3.210 10 H -0.188 1.188 11 H -0.206 1.206 12 H -0.205 1.205 13 C -0.012 4.012 14 H 0.044 0.956 15 C -0.153 4.153 16 C -0.141 4.141 17 C -0.151 4.151 18 C 0.186 3.814 19 C -0.156 4.156 20 O -0.306 6.306 21 C -0.070 4.070 22 C -0.057 4.057 23 O -0.315 6.315 24 H 0.047 0.953 25 H 0.092 0.908 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.098 0.902 29 H -0.014 1.014 30 H 0.027 0.973 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.103 0.897 35 H 0.077 0.923 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.149 0.851 42 H 0.138 0.862 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.894 -2.658 19.206 19.482 hybrid contribution -0.831 -0.250 -1.336 1.593 sum -2.725 -2.908 17.870 18.309 Atomic orbital electron populations 1.22243 0.98597 1.02045 1.00508 1.22028 0.92776 0.90615 1.01556 1.62299 1.59087 1.02470 1.02384 1.19426 0.92637 0.93609 0.86450 1.21501 1.23773 1.19047 0.91286 0.92196 1.25851 0.96039 0.95834 1.01783 1.70099 1.35908 1.30069 1.21514 0.85399 0.78390 0.78515 0.78713 1.18793 1.20565 1.20481 1.21363 0.96131 0.93707 0.89995 0.95633 1.21637 1.00765 0.94772 0.98096 1.21376 1.01034 0.99037 0.92657 1.21810 1.01606 0.92813 0.98860 1.23229 0.80452 0.92727 0.84972 1.22058 1.02188 0.98909 0.92461 1.89285 1.19252 1.50208 1.71851 1.24624 1.00714 0.90639 0.91046 1.24418 0.82254 1.03557 0.95506 1.88860 1.30549 1.76445 1.35694 0.95268 0.90819 0.92751 0.92122 0.90172 1.01370 0.97314 0.92868 0.93754 0.91583 0.89686 0.92276 0.89542 0.89773 0.90282 0.91277 0.90838 0.85142 0.86195 0.89289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.52 9.22 71.98 0.66 -5.85 16 2 C 0.06 2.31 5.38 86.30 0.46 2.78 16 3 N -0.54 -23.90 4.58 -875.51 -4.01 -27.91 16 4 C 0.20 11.12 4.33 85.56 0.37 11.49 16 5 C -0.52 -29.83 8.31 25.60 0.21 -29.62 16 6 H 0.06 3.41 7.22 -2.91 -0.02 3.39 16 7 C 0.00 0.15 5.46 84.66 0.46 0.61 16 8 N -0.93 -57.18 13.29 21.45 0.28 -56.90 16 9 Si 0.96 45.08 29.54 68.60 2.03 47.10 16 10 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 13 C 0.10 3.64 1.25 44.92 0.06 3.69 16 14 H 0.03 1.06 5.99 -2.39 -0.01 1.05 16 15 C -0.11 -4.14 4.99 30.59 0.15 -3.99 16 16 C -0.10 -2.91 5.78 30.60 0.18 -2.73 16 17 C -0.11 -2.85 5.34 30.59 0.16 -2.69 16 18 C 0.26 7.13 1.03 30.57 0.03 7.16 16 19 C -0.12 -3.68 4.20 30.59 0.13 -3.55 16 20 O -0.38 -10.43 9.66 -126.22 -1.22 -11.65 16 21 C 0.01 0.10 7.91 72.64 0.57 0.68 16 22 C 0.02 0.30 8.07 72.64 0.59 0.89 16 23 O -0.39 -9.73 10.87 -126.22 -1.37 -11.10 16 24 H 0.03 1.28 6.57 -2.39 -0.02 1.26 16 25 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 26 H 0.05 1.92 6.33 -2.39 -0.02 1.91 16 27 H 0.06 2.65 6.71 -2.39 -0.02 2.63 16 28 H 0.08 2.72 6.33 -2.39 -0.02 2.70 16 29 H -0.03 -1.87 6.31 -2.39 -0.02 -1.88 16 30 H 0.01 0.52 5.89 -2.38 -0.01 0.50 16 31 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 32 H 0.04 1.85 6.22 -2.39 -0.01 1.83 16 33 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 34 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 35 H 0.06 1.77 7.69 -2.39 -0.02 1.75 16 36 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.08 2.52 8.14 -2.39 -0.02 2.51 16 39 H 0.07 2.09 6.38 -2.39 -0.02 2.08 16 40 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.13 1.68 8.14 -2.38 -0.02 1.66 16 42 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 Total: -1.00 -67.44 321.90 0.73 -66.71 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 0.98 Total: 14.89 kcal Atomic # 6 Polarization: -25.18 SS G_CDS: 4.04 Total: -21.14 kcal Atomic # 7 Polarization: -81.08 SS G_CDS: -3.73 Total: -84.81 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -2.59 Total: -22.76 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -67.44 0.73 -66.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169950257.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.719 kcal (2) G-P(sol) polarization free energy of solvation -67.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds