Wall clock time and date at job start Mon Mar 30 2020 01:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46897 * 109.47253 * 2 1 4 4 C 1.46904 * 111.00016 * 65.72385 * 3 2 1 5 5 C 1.50695 * 109.47290 * 66.04495 * 4 3 2 6 6 H 1.07995 * 119.99859 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00017 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99583 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00036 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47374 * 89.99766 * 9 7 5 11 11 H 1.48500 * 109.47318 * 329.99455 * 9 7 5 12 12 H 1.48500 * 109.47152 * 209.99546 * 9 7 5 13 13 C 1.46901 * 111.00365 * 301.76514 * 3 2 1 14 14 H 1.09007 * 109.46932 * 67.81876 * 13 3 2 15 15 C 1.52993 * 109.47454 * 187.82542 * 13 3 2 16 16 C 1.53002 * 109.49262 * 180.17522 * 15 13 3 17 17 C 1.53017 * 109.47007 * 299.83916 * 16 15 13 18 18 C 1.52944 * 109.46176 * 59.76765 * 17 16 15 19 19 C 1.52962 * 109.82546 * 300.37160 * 18 17 16 20 20 O 1.43692 * 109.44846 * 180.22719 * 18 17 16 21 21 C 1.44800 * 104.79524 * 215.86515 * 20 18 17 22 22 C 1.54911 * 101.72528 * 36.06884 * 21 20 18 23 23 O 1.43314 * 109.64739 * 60.88696 * 18 17 16 24 24 H 1.09002 * 109.47279 * 300.19726 * 1 2 3 25 25 H 1.08997 * 109.47440 * 60.19553 * 1 2 3 26 26 H 1.08995 * 109.47394 * 180.19518 * 1 2 3 27 27 H 1.09001 * 109.46884 * 239.99711 * 2 1 3 28 28 H 1.08997 * 109.47258 * 120.00276 * 2 1 3 29 29 H 1.09002 * 109.46402 * 306.04262 * 4 3 2 30 30 H 1.08994 * 109.47074 * 186.04977 * 4 3 2 31 31 H 0.96992 * 120.00677 * 0.02562 * 8 7 5 32 32 H 1.08998 * 109.46962 * 300.17800 * 15 13 3 33 33 H 1.09002 * 109.46820 * 60.17010 * 15 13 3 34 34 H 1.08992 * 109.47104 * 59.83884 * 16 15 13 35 35 H 1.08999 * 109.46999 * 179.83736 * 16 15 13 36 36 H 1.09003 * 109.47118 * 179.76619 * 17 16 15 37 37 H 1.09005 * 109.47188 * 299.76652 * 17 16 15 38 38 H 1.09003 * 109.47820 * 299.64883 * 19 18 17 39 39 H 1.09003 * 109.47634 * 179.63524 * 19 18 17 40 40 H 1.08999 * 110.98087 * 277.95396 * 21 20 18 41 41 H 1.09004 * 110.97743 * 154.17791 * 21 20 18 42 42 H 1.09001 * 110.69118 * 206.07793 * 22 21 20 43 43 H 1.08999 * 110.69544 * 82.87551 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.6635 2.0693 1.2502 5 6 2.3980 1.4293 2.4000 6 1 3.0624 0.5972 2.2201 7 6 2.2208 1.9055 3.6817 8 7 1.4111 2.9185 3.9008 9 14 3.1306 1.1118 5.1070 10 1 4.4363 1.7919 5.3011 11 1 3.3602 -0.3248 4.8093 12 1 2.3185 1.2372 6.3440 13 6 1.5145 2.1220 -1.1660 14 1 0.4369 2.2570 -1.0716 15 6 2.1954 3.4901 -1.2388 16 6 1.6664 4.2599 -2.4506 17 6 1.9717 3.4737 -3.7273 18 6 1.2983 2.1024 -3.6545 19 6 1.8199 1.3320 -2.4404 20 8 1.5896 1.3622 -4.8512 21 6 0.3827 0.6099 -5.1237 22 6 -0.7168 1.6076 -4.6815 23 8 -0.1211 2.2677 -3.5461 24 1 -0.3634 0.5169 0.8882 25 1 -0.3634 0.5108 -0.8917 26 1 -0.3634 -1.0276 0.0035 27 1 1.8932 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 0.5891 1.9884 1.4152 30 1 1.9424 3.1207 1.1810 31 1 0.9384 3.3304 3.1607 32 1 1.9805 4.0517 -0.3296 33 1 3.2726 3.3551 -1.3362 34 1 0.5889 4.3927 -2.3545 35 1 2.1496 5.2357 -2.5004 36 1 1.5911 4.0201 -4.5903 37 1 3.0496 3.3445 -3.8255 38 1 2.8972 1.1940 -2.5329 39 1 1.3318 0.3587 -2.3903 40 1 0.3470 -0.3005 -4.5255 41 1 0.2973 0.3806 -6.1859 42 1 -1.6224 1.0772 -4.3873 43 1 -0.9291 2.3235 -5.4756 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169950258.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:25 Heat of formation + Delta-G solvation = -94.803784 kcal Electronic energy + Delta-G solvation = -22600.807210 eV Core-core repulsion = 19452.681051 eV Total energy + Delta-G solvation = -3148.126159 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.91119 -38.24005 -35.39731 -34.97074 -32.81917 -30.74675 -30.02373 -29.03884 -27.52949 -25.55321 -23.58266 -23.30613 -22.23632 -21.71589 -20.09356 -18.84654 -17.08049 -16.81615 -16.52084 -15.83623 -15.26703 -14.81962 -14.41354 -14.19232 -13.82481 -13.65205 -13.62813 -13.33000 -12.86300 -12.57173 -12.40009 -12.24223 -11.99471 -11.57805 -11.51635 -11.46748 -11.29119 -11.00683 -10.74948 -10.64945 -10.52714 -10.35202 -10.23060 -10.07856 -9.96819 -9.61781 -9.40410 -8.58328 -8.29591 -7.18556 -6.30901 -3.98624 3.32072 3.47230 3.50479 3.66248 3.88538 4.41872 4.53646 4.66214 4.71332 4.78098 4.97759 5.12477 5.20898 5.29020 5.38305 5.44055 5.48305 5.55133 5.60394 5.62354 5.75382 5.82853 5.90556 5.92407 6.00446 6.08198 6.15298 6.17975 6.35322 6.42427 6.45636 6.57544 6.66914 6.78973 6.88344 7.10407 7.17222 7.24949 7.90743 8.10288 8.41390 8.66161 8.94070 9.71302 11.08165 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.031547 B = 0.005059 C = 0.004747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.344493 B = 5533.083195 C = 5896.636810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.059 3.941 3 N -0.525 5.525 4 C 0.178 3.822 5 C -0.584 4.584 6 H 0.056 0.944 7 C 0.013 3.987 8 N -0.917 5.917 9 Si 1.073 2.927 10 H -0.288 1.288 11 H -0.289 1.289 12 H -0.286 1.286 13 C 0.091 3.909 14 H 0.042 0.958 15 C -0.115 4.115 16 C -0.111 4.111 17 C -0.116 4.116 18 C 0.260 3.740 19 C -0.127 4.127 20 O -0.374 6.374 21 C 0.015 3.985 22 C 0.019 3.981 23 O -0.370 6.370 24 H 0.062 0.938 25 H 0.048 0.952 26 H 0.046 0.954 27 H 0.053 0.947 28 H 0.082 0.918 29 H -0.015 1.015 30 H 0.024 0.976 31 H 0.266 0.734 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.105 0.895 42 H 0.096 0.904 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.962 -2.581 -18.060 18.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.070 4.070 3 N -0.248 5.248 4 C 0.052 3.948 5 C -0.622 4.622 6 H 0.074 0.926 7 C -0.190 4.190 8 N -0.554 5.554 9 Si 0.902 3.098 10 H -0.215 1.215 11 H -0.216 1.216 12 H -0.212 1.212 13 C -0.018 4.018 14 H 0.059 0.941 15 C -0.153 4.153 16 C -0.149 4.149 17 C -0.154 4.154 18 C 0.183 3.817 19 C -0.165 4.165 20 O -0.294 6.294 21 C -0.061 4.061 22 C -0.058 4.058 23 O -0.291 6.291 24 H 0.081 0.919 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.100 0.900 29 H 0.002 0.998 30 H 0.042 0.958 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.123 0.877 42 H 0.114 0.886 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.112 -2.407 -16.385 16.695 hybrid contribution -1.289 -0.244 -1.728 2.170 sum -3.401 -2.651 -18.114 18.620 Atomic orbital electron populations 1.22394 0.99513 1.00853 1.01908 1.22012 0.91964 0.91570 1.01424 1.62294 1.58442 1.01513 1.02585 1.19907 0.94097 0.94508 0.86245 1.21999 1.28681 1.19001 0.92559 0.92616 1.25797 0.97099 0.96059 1.00050 1.70758 1.26986 1.22100 1.35532 0.83477 0.75751 0.75221 0.75337 1.21503 1.21551 1.21201 1.21382 0.97113 0.93152 0.90126 0.94052 1.21645 1.00642 0.95304 0.97660 1.21448 1.01833 0.98133 0.93525 1.21795 1.00966 0.93465 0.99161 1.23411 0.80971 0.91915 0.85358 1.22228 1.02279 0.98845 0.93196 1.89240 1.35587 1.60336 1.44276 1.24339 0.83470 0.95610 1.02713 1.24153 0.97418 0.94713 0.89496 1.88954 1.18615 1.76793 1.44713 0.91916 0.93331 0.93514 0.92825 0.89997 0.99754 0.95841 0.92344 0.91048 0.91355 0.91418 0.91495 0.91431 0.90245 0.89747 0.91312 0.90727 0.87672 0.88561 0.90925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.48 9.07 37.15 0.34 -3.15 16 2 C 0.06 1.17 5.35 -3.83 -0.02 1.15 16 3 N -0.52 -11.45 4.57 -228.08 -1.04 -12.49 16 4 C 0.18 4.60 3.73 -4.98 -0.02 4.58 16 5 C -0.58 -16.61 8.43 -34.44 -0.29 -16.90 16 6 H 0.06 1.60 7.14 -52.49 -0.37 1.22 16 7 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 8 N -0.92 -28.11 13.65 55.43 0.76 -27.35 16 9 Si 1.07 25.66 29.90 -169.99 -5.08 20.57 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 C 0.09 1.69 1.17 -67.71 -0.08 1.61 16 14 H 0.04 0.84 6.31 -51.92 -0.33 0.51 16 15 C -0.11 -2.01 5.10 -26.73 -0.14 -2.14 16 16 C -0.11 -1.59 5.79 -26.72 -0.15 -1.75 16 17 C -0.12 -1.56 5.33 -26.75 -0.14 -1.70 16 18 C 0.26 3.73 1.02 -26.78 -0.03 3.70 16 19 C -0.13 -2.04 3.94 -26.74 -0.11 -2.15 16 20 O -0.37 -5.04 10.99 -59.04 -0.65 -5.69 16 21 C 0.02 0.15 7.91 38.17 0.30 0.45 16 22 C 0.02 0.19 8.07 38.17 0.31 0.50 16 23 O -0.37 -5.31 9.62 -59.04 -0.57 -5.88 16 24 H 0.06 1.33 6.41 -51.93 -0.33 1.00 16 25 H 0.05 0.86 6.14 -51.93 -0.32 0.54 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.95 6.32 -51.93 -0.33 0.62 16 28 H 0.08 1.80 6.72 -51.93 -0.35 1.45 16 29 H -0.02 -0.41 6.07 -51.93 -0.31 -0.73 16 30 H 0.02 0.64 5.85 -51.93 -0.30 0.34 16 31 H 0.27 8.16 7.22 -40.82 -0.29 7.87 16 32 H 0.07 1.39 6.29 -51.93 -0.33 1.06 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.07 1.01 7.72 -51.93 -0.40 0.61 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 39 H 0.07 1.09 5.91 -51.93 -0.31 0.79 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 319.92 15.07 4.82 4.82 Total: -1.00 -31.49 319.92 -8.89 -40.38 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -7.00 Total: 1.14 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: -0.13 Total: -15.50 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: -0.29 Total: -39.84 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: -1.22 Total: -11.57 kcal Atomic # 14 Polarization: 25.66 SS G_CDS: -5.08 Total: 20.57 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.49 -8.89 -40.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169950258.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.422 kcal (2) G-P(sol) polarization free energy of solvation -31.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds