Wall clock time and date at job start Mon Mar 30 2020 01:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46897 * 109.47253 * 2 1 4 4 C 1.46904 * 111.00016 * 65.72385 * 3 2 1 5 5 C 1.50695 * 109.47290 * 66.04495 * 4 3 2 6 6 H 1.07995 * 119.99859 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00017 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99583 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00036 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47374 * 89.99766 * 9 7 5 11 11 H 1.48500 * 109.47318 * 329.99455 * 9 7 5 12 12 H 1.48500 * 109.47152 * 209.99546 * 9 7 5 13 13 C 1.46901 * 111.00365 * 301.76514 * 3 2 1 14 14 H 1.09007 * 109.46932 * 67.81876 * 13 3 2 15 15 C 1.52993 * 109.47454 * 187.82542 * 13 3 2 16 16 C 1.53002 * 109.49262 * 180.17522 * 15 13 3 17 17 C 1.53017 * 109.47007 * 299.83916 * 16 15 13 18 18 C 1.52944 * 109.46176 * 59.76765 * 17 16 15 19 19 C 1.52962 * 109.82546 * 300.37160 * 18 17 16 20 20 O 1.43692 * 109.44846 * 180.22719 * 18 17 16 21 21 C 1.44800 * 104.79524 * 215.86515 * 20 18 17 22 22 C 1.54911 * 101.72528 * 36.06884 * 21 20 18 23 23 O 1.43314 * 109.64739 * 60.88696 * 18 17 16 24 24 H 1.09002 * 109.47279 * 300.19726 * 1 2 3 25 25 H 1.08997 * 109.47440 * 60.19553 * 1 2 3 26 26 H 1.08995 * 109.47394 * 180.19518 * 1 2 3 27 27 H 1.09001 * 109.46884 * 239.99711 * 2 1 3 28 28 H 1.08997 * 109.47258 * 120.00276 * 2 1 3 29 29 H 1.09002 * 109.46402 * 306.04262 * 4 3 2 30 30 H 1.08994 * 109.47074 * 186.04977 * 4 3 2 31 31 H 0.96992 * 120.00677 * 0.02562 * 8 7 5 32 32 H 1.08998 * 109.46962 * 300.17800 * 15 13 3 33 33 H 1.09002 * 109.46820 * 60.17010 * 15 13 3 34 34 H 1.08992 * 109.47104 * 59.83884 * 16 15 13 35 35 H 1.08999 * 109.46999 * 179.83736 * 16 15 13 36 36 H 1.09003 * 109.47118 * 179.76619 * 17 16 15 37 37 H 1.09005 * 109.47188 * 299.76652 * 17 16 15 38 38 H 1.09003 * 109.47820 * 299.64883 * 19 18 17 39 39 H 1.09003 * 109.47634 * 179.63524 * 19 18 17 40 40 H 1.08999 * 110.98087 * 277.95396 * 21 20 18 41 41 H 1.09004 * 110.97743 * 154.17791 * 21 20 18 42 42 H 1.09001 * 110.69118 * 206.07793 * 22 21 20 43 43 H 1.08999 * 110.69544 * 82.87551 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.6635 2.0693 1.2502 5 6 2.3980 1.4293 2.4000 6 1 3.0624 0.5972 2.2201 7 6 2.2208 1.9055 3.6817 8 7 1.4111 2.9185 3.9008 9 14 3.1306 1.1118 5.1070 10 1 4.4363 1.7919 5.3011 11 1 3.3602 -0.3248 4.8093 12 1 2.3185 1.2372 6.3440 13 6 1.5145 2.1220 -1.1660 14 1 0.4369 2.2570 -1.0716 15 6 2.1954 3.4901 -1.2388 16 6 1.6664 4.2599 -2.4506 17 6 1.9717 3.4737 -3.7273 18 6 1.2983 2.1024 -3.6545 19 6 1.8199 1.3320 -2.4404 20 8 1.5896 1.3622 -4.8512 21 6 0.3827 0.6099 -5.1237 22 6 -0.7168 1.6076 -4.6815 23 8 -0.1211 2.2677 -3.5461 24 1 -0.3634 0.5169 0.8882 25 1 -0.3634 0.5108 -0.8917 26 1 -0.3634 -1.0276 0.0035 27 1 1.8932 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 0.5891 1.9884 1.4152 30 1 1.9424 3.1207 1.1810 31 1 0.9384 3.3304 3.1607 32 1 1.9805 4.0517 -0.3296 33 1 3.2726 3.3551 -1.3362 34 1 0.5889 4.3927 -2.3545 35 1 2.1496 5.2357 -2.5004 36 1 1.5911 4.0201 -4.5903 37 1 3.0496 3.3445 -3.8255 38 1 2.8972 1.1940 -2.5329 39 1 1.3318 0.3587 -2.3903 40 1 0.3470 -0.3005 -4.5255 41 1 0.2973 0.3806 -6.1859 42 1 -1.6224 1.0772 -4.3873 43 1 -0.9291 2.3235 -5.4756 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169950258.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:24 Heat of formation + Delta-G solvation = -115.995391 kcal Electronic energy + Delta-G solvation = -22601.726147 eV Core-core repulsion = 19452.681051 eV Total energy + Delta-G solvation = -3149.045096 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.97253 -39.74381 -36.79259 -35.98584 -34.94517 -31.96845 -31.38456 -30.56949 -28.72148 -27.48677 -25.23128 -24.30914 -23.86657 -23.00008 -21.47144 -20.30518 -18.71018 -18.13975 -17.85963 -17.01533 -16.48109 -16.31602 -15.88470 -15.56918 -15.48740 -15.09200 -14.96203 -14.61237 -14.08317 -13.87095 -13.75108 -13.53283 -13.29151 -13.24573 -13.21105 -13.07062 -12.63814 -12.53478 -12.47874 -12.21506 -11.92669 -11.78666 -11.74356 -11.55938 -11.18455 -11.12129 -10.77784 -10.53654 -10.43752 -9.01409 -8.64339 -6.33875 1.52923 1.62250 1.79917 2.41257 2.56734 2.87174 3.13989 3.19849 3.55792 3.71988 3.84265 3.91668 4.03210 4.09866 4.15184 4.21619 4.25066 4.31909 4.40603 4.41587 4.49344 4.55691 4.61213 4.68616 4.71807 4.81504 4.86536 4.89513 4.94562 5.02943 5.06724 5.11011 5.13897 5.19007 5.22849 5.34809 5.42912 5.85649 6.04467 6.14041 6.45787 6.46711 6.70375 7.45750 8.73796 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.031547 B = 0.005059 C = 0.004747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.344493 B = 5533.083195 C = 5896.636810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.058 3.942 3 N -0.534 5.534 4 C 0.193 3.807 5 C -0.593 4.593 6 H 0.052 0.948 7 C -0.038 4.038 8 N -0.940 5.940 9 Si 1.122 2.878 10 H -0.274 1.274 11 H -0.270 1.270 12 H -0.284 1.284 13 C 0.096 3.904 14 H 0.024 0.976 15 C -0.114 4.114 16 C -0.102 4.102 17 C -0.114 4.114 18 C 0.264 3.736 19 C -0.119 4.119 20 O -0.385 6.385 21 C 0.011 3.989 22 C 0.012 3.988 23 O -0.394 6.394 24 H 0.026 0.974 25 H 0.056 0.944 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.058 0.942 29 H -0.039 1.039 30 H 0.004 0.996 31 H 0.252 0.748 32 H 0.040 0.960 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.137 0.863 42 H 0.113 0.887 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.632 -3.729 -19.979 20.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.070 4.070 3 N -0.257 5.257 4 C 0.066 3.934 5 C -0.631 4.631 6 H 0.070 0.930 7 C -0.235 4.235 8 N -0.578 5.578 9 Si 0.943 3.057 10 H -0.199 1.199 11 H -0.195 1.195 12 H -0.210 1.210 13 C -0.013 4.013 14 H 0.042 0.958 15 C -0.151 4.151 16 C -0.140 4.140 17 C -0.151 4.151 18 C 0.187 3.813 19 C -0.157 4.157 20 O -0.305 6.305 21 C -0.065 4.065 22 C -0.064 4.064 23 O -0.316 6.316 24 H 0.045 0.955 25 H 0.075 0.925 26 H 0.094 0.906 27 H 0.102 0.898 28 H 0.077 0.923 29 H -0.022 1.022 30 H 0.021 0.979 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.155 0.845 42 H 0.131 0.869 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.790 -3.565 -18.349 18.778 hybrid contribution -1.448 0.076 -1.223 1.897 sum -3.238 -3.489 -19.572 20.142 Atomic orbital electron populations 1.22250 0.98387 1.02237 1.00495 1.22046 0.92900 0.90413 1.01663 1.62235 1.59012 1.02470 1.01972 1.19559 0.92193 0.93670 0.87952 1.22303 1.28433 1.18764 0.93634 0.92982 1.27345 0.97077 0.95758 1.03285 1.70893 1.28435 1.23527 1.34929 0.82868 0.75090 0.75482 0.72224 1.19930 1.19500 1.20953 1.21389 0.95957 0.93847 0.90080 0.95814 1.21618 1.00541 0.94930 0.98055 1.21362 1.01271 0.98770 0.92556 1.21780 1.01379 0.93109 0.98853 1.23211 0.81268 0.91996 0.84868 1.22128 1.02196 0.98770 0.92635 1.89226 1.37209 1.60731 1.43371 1.24616 0.81935 0.95122 1.04789 1.24448 0.97895 0.95188 0.88860 1.88938 1.18607 1.77402 1.46619 0.95490 0.92474 0.90637 0.89849 0.92322 1.02188 0.97853 0.93904 0.94082 0.91567 0.92213 0.89531 0.89648 0.89673 0.90052 0.91099 0.90464 0.84511 0.86925 0.89313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.47 9.07 71.98 0.65 -5.82 16 2 C 0.06 2.30 5.35 86.30 0.46 2.76 16 3 N -0.53 -23.81 4.57 -875.51 -4.00 -27.81 16 4 C 0.19 10.46 3.73 85.55 0.32 10.78 16 5 C -0.59 -34.64 8.43 25.60 0.22 -34.43 16 6 H 0.05 3.02 7.14 -2.91 -0.02 3.00 16 7 C -0.04 -2.22 5.46 84.65 0.46 -1.76 16 8 N -0.94 -59.35 13.65 21.45 0.29 -59.06 16 9 Si 1.12 51.62 29.90 68.60 2.05 53.68 16 10 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 11 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 13 C 0.10 3.61 1.17 44.92 0.05 3.66 16 14 H 0.02 0.99 6.31 -2.38 -0.02 0.97 16 15 C -0.11 -4.07 5.10 30.59 0.16 -3.92 16 16 C -0.10 -2.83 5.79 30.60 0.18 -2.66 16 17 C -0.11 -2.82 5.33 30.58 0.16 -2.66 16 18 C 0.26 7.05 1.02 30.56 0.03 7.08 16 19 C -0.12 -3.68 3.94 30.59 0.12 -3.56 16 20 O -0.38 -9.28 10.99 -126.22 -1.39 -10.67 16 21 C 0.01 0.18 7.91 72.64 0.57 0.76 16 22 C 0.01 0.21 8.07 72.64 0.59 0.79 16 23 O -0.39 -10.62 9.62 -126.22 -1.21 -11.83 16 24 H 0.03 1.17 6.41 -2.39 -0.02 1.15 16 25 H 0.06 1.99 6.14 -2.39 -0.01 1.98 16 26 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.08 2.83 6.32 -2.39 -0.02 2.81 16 28 H 0.06 2.60 6.72 -2.39 -0.02 2.58 16 29 H -0.04 -2.30 6.07 -2.39 -0.01 -2.31 16 30 H 0.00 0.21 5.85 -2.39 -0.01 0.19 16 31 H 0.25 16.22 7.22 -92.71 -0.67 15.55 16 32 H 0.04 1.69 6.29 -2.39 -0.02 1.68 16 33 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.06 1.77 7.72 -2.39 -0.02 1.75 16 35 H 0.09 2.06 8.14 -2.39 -0.02 2.05 16 36 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 38 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 39 H 0.07 2.12 5.91 -2.39 -0.01 2.11 16 40 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.14 1.37 8.14 -2.38 -0.02 1.35 16 42 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -69.75 319.92 0.80 -68.95 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 1.08 Total: 15.72 kcal Atomic # 6 Polarization: -32.94 SS G_CDS: 3.97 Total: -28.97 kcal Atomic # 7 Polarization: -83.17 SS G_CDS: -3.71 Total: -86.87 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -2.60 Total: -22.50 kcal Atomic # 14 Polarization: 51.62 SS G_CDS: 2.05 Total: 53.68 kcal Total: -69.75 0.80 -68.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169950258.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.048 kcal (2) G-P(sol) polarization free energy of solvation -69.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds