Wall clock time and date at job start Mon Mar 30 2020 01:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45193 * 109.46974 * 2 1 4 4 C 1.34236 * 116.99671 * 180.02562 * 3 2 1 5 5 O 1.20821 * 119.99788 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99647 * 179.97438 * 4 3 2 7 7 N 1.46904 * 109.46478 * 173.00712 * 6 4 3 8 8 C 1.46900 * 110.99805 * 274.47856 * 7 6 4 9 9 C 1.50702 * 109.46958 * 99.12119 * 8 7 6 10 10 H 1.07995 * 119.99808 * 35.81311 * 9 8 7 11 11 C 1.37879 * 119.99707 * 215.81333 * 9 8 7 12 12 N 1.31507 * 120.00023 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99515 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47108 * 90.00167 * 13 11 9 15 15 H 1.48496 * 109.47005 * 209.99641 * 13 11 9 16 16 H 1.48498 * 109.47443 * 329.99969 * 13 11 9 17 17 C 1.46906 * 110.99760 * 150.52813 * 7 6 4 18 18 H 1.08992 * 110.67061 * 171.16090 * 17 7 6 19 19 C 1.54889 * 110.75366 * 47.92658 * 17 7 6 20 20 C 1.54473 * 104.09943 * 203.89545 * 19 17 7 21 21 C 1.53866 * 106.68338 * 23.34167 * 20 19 17 22 22 H 1.09005 * 110.07438 * 240.85407 * 21 20 19 23 23 C 1.52998 * 110.03368 * 119.44493 * 21 20 19 24 24 C 1.54267 * 106.60402 * 0.16108 * 21 20 19 25 25 H 1.09001 * 109.47089 * 300.00191 * 1 2 3 26 26 H 1.09003 * 109.46808 * 60.00433 * 1 2 3 27 27 H 1.09004 * 109.47022 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47057 * 239.99307 * 2 1 3 29 29 H 1.09003 * 109.46926 * 120.00110 * 2 1 3 30 30 H 1.08994 * 109.47307 * 53.01018 * 6 4 3 31 31 H 1.08996 * 109.47264 * 293.00263 * 6 4 3 32 32 H 1.09004 * 109.47016 * 219.11743 * 8 7 6 33 33 H 1.08995 * 109.47231 * 339.11693 * 8 7 6 34 34 H 0.97006 * 119.99723 * 180.02562 * 12 11 9 35 35 H 1.09002 * 110.48938 * 322.41914 * 19 17 7 36 36 H 1.08999 * 110.49237 * 85.06640 * 19 17 7 37 37 H 1.09006 * 109.85579 * 264.10191 * 20 19 17 38 38 H 1.08996 * 110.16055 * 142.75252 * 20 19 17 39 39 H 1.08996 * 109.47231 * 302.83559 * 23 21 20 40 40 H 1.09005 * 109.47434 * 62.83142 * 23 21 20 41 41 H 1.08998 * 109.47485 * 182.83005 * 23 21 20 42 42 H 1.09002 * 110.48755 * 217.71480 * 24 21 20 43 43 H 1.08992 * 110.48916 * 95.06431 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0807 0.5865 -0.0005 6 6 3.9207 2.9374 -0.0012 7 7 5.3783 2.8643 0.1670 8 6 5.7414 2.7954 1.5887 9 6 6.0193 1.3634 1.9672 10 1 6.4965 0.7009 1.2603 11 6 5.6644 0.8991 3.2161 12 7 5.0838 1.7061 4.0770 13 14 6.0083 -0.8761 3.6850 14 1 7.3543 -0.9725 4.3049 15 1 4.9828 -1.3397 4.6538 16 1 5.9613 -1.7273 2.4691 17 6 6.0416 3.9978 -0.4914 18 1 7.1005 4.0259 -0.2347 19 6 5.3501 5.3319 -0.1158 20 6 5.7032 6.2804 -1.2828 21 6 6.0234 5.3888 -2.4953 22 1 7.0495 5.5568 -2.8226 23 6 5.0528 5.6907 -3.6387 24 6 5.8505 3.9291 -2.0269 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.4886 3.5097 0.8196 31 1 3.6882 3.4263 -0.9471 32 1 6.6326 3.3975 1.7657 33 1 4.9187 3.1778 2.1928 34 1 4.8344 1.3795 4.9557 35 1 4.2705 5.1967 -0.0495 36 1 5.7459 5.7154 0.8246 37 1 6.5741 6.8814 -1.0209 38 1 4.8569 6.9288 -1.5092 39 1 4.0291 5.5438 -3.2947 40 1 5.1826 6.7235 -3.9625 41 1 5.2552 5.0201 -4.4738 42 1 6.6108 3.2912 -2.4778 43 1 4.8524 3.5658 -2.2713 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170156370.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:11 Heat of formation + Delta-G solvation = -90.587640 kcal Electronic energy + Delta-G solvation = -21975.384498 eV Core-core repulsion = 18827.441165 eV Total energy + Delta-G solvation = -3147.943333 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.72630 -38.72615 -35.98505 -34.88411 -32.45019 -31.41606 -30.13879 -28.30150 -28.08766 -25.66572 -23.97995 -22.91919 -21.68052 -20.67409 -19.41485 -18.69059 -17.07415 -16.20380 -16.02391 -15.90045 -15.29054 -14.93274 -14.56527 -13.94708 -13.70690 -13.29576 -12.91530 -12.81672 -12.70783 -12.51182 -12.29688 -12.04654 -11.90051 -11.45992 -11.25577 -11.18082 -11.03258 -10.92964 -10.70472 -10.65789 -10.54767 -10.35223 -10.18248 -10.07409 -9.92642 -9.62300 -9.24870 -9.13987 -8.32938 -7.26177 -5.89526 -3.87130 3.19037 3.32221 3.39935 3.45161 3.55846 4.52319 4.69413 4.89209 4.90504 5.17607 5.20757 5.26253 5.41057 5.47181 5.49114 5.56052 5.61380 5.64792 5.66864 5.76129 5.82619 5.92642 5.95133 6.00577 6.04521 6.05967 6.09984 6.13813 6.18809 6.25764 6.31844 6.52708 6.60058 6.72607 7.04734 7.21002 7.34376 8.00500 8.05290 8.20375 8.61279 8.80974 9.24081 9.75191 11.18738 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.013932 B = 0.007096 C = 0.005203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.244873 B = 3945.038364 C = 5379.916981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.064 3.936 3 O -0.376 6.376 4 C 0.452 3.548 5 O -0.454 6.454 6 C 0.076 3.924 7 N -0.515 5.515 8 C 0.176 3.824 9 C -0.472 4.472 10 H 0.063 0.937 11 C 0.054 3.946 12 N -0.909 5.909 13 Si 0.892 3.108 14 H -0.282 1.282 15 H -0.290 1.290 16 H -0.272 1.272 17 C 0.086 3.914 18 H 0.088 0.912 19 C -0.161 4.161 20 C -0.116 4.116 21 C -0.098 4.098 22 H 0.068 0.932 23 C -0.142 4.142 24 C -0.114 4.114 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.094 0.906 32 H 0.012 0.988 33 H 0.035 0.965 34 H 0.258 0.742 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.054 0.946 40 H 0.049 0.951 41 H 0.052 0.948 42 H 0.066 0.934 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.463 6.212 -11.717 14.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.011 4.011 3 O -0.295 6.295 4 C 0.291 3.709 5 O -0.336 6.336 6 C -0.053 4.053 7 N -0.239 5.239 8 C 0.053 3.947 9 C -0.511 4.511 10 H 0.082 0.918 11 C -0.146 4.146 12 N -0.551 5.551 13 Si 0.720 3.280 14 H -0.209 1.209 15 H -0.216 1.216 16 H -0.196 1.196 17 C -0.023 4.023 18 H 0.106 0.894 19 C -0.201 4.201 20 C -0.154 4.154 21 C -0.117 4.117 22 H 0.087 0.913 23 C -0.200 4.200 24 C -0.152 4.152 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.112 0.888 32 H 0.030 0.970 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.133 5.410 -11.748 13.915 hybrid contribution -0.168 -0.421 0.861 0.973 sum -5.301 4.989 -10.887 13.097 Atomic orbital electron populations 1.21772 0.93480 1.02295 1.03061 1.22803 0.94507 0.81522 1.02237 1.86448 1.26143 1.31265 1.85629 1.23728 0.79623 0.93520 0.74039 1.90678 1.59545 1.42227 1.41105 1.21478 0.91433 0.89970 1.02452 1.61987 1.03223 1.39359 1.19283 1.20161 0.96272 0.97819 0.80490 1.21152 1.36420 0.95923 0.97622 0.91849 1.24958 0.95296 0.97434 0.96911 1.69917 1.43018 1.35311 1.06824 0.86576 0.77596 0.85701 0.78111 1.20885 1.21616 1.19635 1.22809 0.98653 0.87586 0.93239 0.89407 1.23192 1.01224 0.97442 0.98221 1.22172 1.00778 0.97552 0.94880 1.21740 0.99221 0.95639 0.95129 0.91346 1.21871 0.99336 1.00729 0.98037 1.22540 1.01995 0.94913 0.95744 0.91667 0.91925 0.90867 0.91956 0.91501 0.91262 0.88842 0.96974 0.94672 0.93238 0.91483 0.91605 0.92269 0.92206 0.92726 0.93154 0.92931 0.91499 0.91519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 10.29 37.16 0.38 -1.40 16 2 C 0.06 1.03 6.19 37.16 0.23 1.26 16 3 O -0.38 -7.15 10.22 -39.27 -0.40 -7.55 16 4 C 0.45 9.79 7.84 36.01 0.28 10.08 16 5 O -0.45 -11.47 14.57 -18.75 -0.27 -11.75 16 6 C 0.08 1.48 3.94 -4.97 -0.02 1.46 16 7 N -0.51 -11.01 3.81 -227.13 -0.87 -11.87 16 8 C 0.18 4.52 5.14 -4.98 -0.03 4.49 16 9 C -0.47 -13.69 7.68 -34.44 -0.26 -13.95 16 10 H 0.06 1.93 7.81 -52.49 -0.41 1.52 16 11 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 12 N -0.91 -27.36 12.78 55.43 0.71 -26.65 16 13 Si 0.89 23.03 29.54 -169.99 -5.02 18.01 16 14 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 15 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 16 H -0.27 -7.12 7.11 56.52 0.40 -6.72 16 17 C 0.09 1.48 2.78 -65.71 -0.18 1.30 16 18 H 0.09 1.57 7.79 -51.93 -0.40 1.17 16 19 C -0.16 -2.40 5.86 -24.96 -0.15 -2.55 16 20 C -0.12 -1.40 6.46 -25.51 -0.16 -1.56 16 21 C -0.10 -1.16 3.50 -89.51 -0.31 -1.47 16 22 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 23 C -0.14 -1.45 8.84 37.16 0.33 -1.12 16 24 C -0.11 -1.64 5.79 -25.07 -0.15 -1.79 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.97 8.13 -51.93 -0.42 0.54 16 29 H 0.07 1.19 8.13 -51.93 -0.42 0.77 16 30 H 0.07 1.37 6.90 -51.93 -0.36 1.01 16 31 H 0.09 1.51 5.46 -51.93 -0.28 1.23 16 32 H 0.01 0.31 7.41 -51.93 -0.39 -0.07 16 33 H 0.04 0.97 6.34 -51.93 -0.33 0.64 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.07 1.00 5.92 -51.93 -0.31 0.69 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.66 7.67 -51.93 -0.40 0.26 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.07 0.98 5.89 -51.93 -0.31 0.67 16 LS Contribution 339.20 15.07 5.11 5.11 Total: -1.00 -32.17 339.20 -8.27 -40.44 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -7.39 Total: -1.96 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -0.14 Total: -3.78 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: -0.16 Total: -38.52 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.67 Total: -19.30 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.02 Total: 18.01 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.17 -8.27 -40.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170156370.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.148 kcal (2) G-P(sol) polarization free energy of solvation -32.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds