Wall clock time and date at job start Mon Mar 30 2020 01:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45203 * 109.47426 * 2 1 4 4 C 1.34229 * 117.00040 * 180.02562 * 3 2 1 5 5 O 1.20822 * 120.00158 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99527 * 179.97438 * 4 3 2 7 7 N 1.46915 * 109.46918 * 181.72646 * 6 4 3 8 8 C 1.46902 * 110.99475 * 76.27834 * 7 6 4 9 9 C 1.50697 * 109.47152 * 65.43912 * 8 7 6 10 10 H 1.07998 * 119.99868 * 0.57923 * 9 8 7 11 11 C 1.37878 * 119.99946 * 180.57488 * 9 8 7 12 12 N 1.31518 * 119.99778 * 179.97438 * 11 9 8 13 13 Si 1.86792 * 120.00021 * 0.02562 * 11 9 8 14 14 H 1.48507 * 109.47456 * 89.99500 * 13 11 9 15 15 H 1.48500 * 109.47265 * 209.99329 * 13 11 9 16 16 H 1.48506 * 109.47380 * 329.99376 * 13 11 9 17 17 C 1.46897 * 110.99799 * 200.23543 * 7 6 4 18 18 H 1.09000 * 110.01470 * 294.64975 * 17 7 6 19 19 C 1.54265 * 110.02824 * 173.21650 * 17 7 6 20 20 C 1.54896 * 104.19265 * 217.10279 * 19 17 7 21 21 C 1.54891 * 102.75048 * 37.94217 * 20 19 17 22 22 H 1.08995 * 110.60112 * 80.78828 * 21 20 19 23 23 C 1.52994 * 110.48769 * 203.38160 * 21 20 19 24 24 C 1.53866 * 110.03662 * 56.04663 * 17 7 6 25 25 H 1.09001 * 109.47311 * 300.00465 * 1 2 3 26 26 H 1.09000 * 109.46853 * 59.99960 * 1 2 3 27 27 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47311 * 239.99535 * 2 1 3 29 29 H 1.08998 * 109.47150 * 119.99592 * 2 1 3 30 30 H 1.08998 * 109.47336 * 61.72884 * 6 4 3 31 31 H 1.09000 * 109.47563 * 301.72087 * 6 4 3 32 32 H 1.08997 * 109.46525 * 185.43642 * 8 7 6 33 33 H 1.08993 * 109.47266 * 305.43576 * 8 7 6 34 34 H 0.97001 * 119.99731 * 180.02562 * 12 11 9 35 35 H 1.09003 * 110.48672 * 335.77503 * 19 17 7 36 36 H 1.09003 * 110.49144 * 98.42604 * 19 17 7 37 37 H 1.08997 * 110.75470 * 279.62506 * 20 19 17 38 38 H 1.09007 * 110.91304 * 156.32881 * 20 19 17 39 39 H 1.08999 * 109.47158 * 174.77381 * 23 21 20 40 40 H 1.08998 * 109.46693 * 294.77269 * 23 21 20 41 41 H 1.09004 * 109.47192 * 54.77059 * 23 21 20 42 42 H 1.09002 * 110.03691 * 238.56640 * 24 17 7 43 43 H 1.08999 * 110.03194 * 0.02562 * 24 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9207 2.9374 -0.0012 7 7 5.3873 2.8607 -0.0434 8 6 5.8580 2.5233 -1.3934 9 6 5.5174 3.6459 -2.3393 10 1 5.0111 4.5264 -1.9723 11 6 5.8523 3.5489 -3.6733 12 7 5.5546 4.5285 -4.4989 13 14 6.7275 2.0258 -4.3082 14 1 5.7227 1.0226 -4.7433 15 1 7.5898 2.3942 -5.4597 16 1 7.5660 1.4495 -3.2264 17 6 5.9936 4.1129 0.4281 18 1 5.7508 4.9258 -0.2562 19 6 7.5240 3.9510 0.5360 20 6 7.9038 4.7644 1.7983 21 6 6.7253 4.4729 2.7603 22 1 6.8594 3.5084 3.2498 23 6 6.5955 5.5868 3.8010 24 6 5.4859 4.4447 1.8422 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.6102 3.4594 0.9039 31 1 3.5600 3.4794 -0.8753 32 1 6.9381 2.3782 -1.3758 33 1 5.3736 1.6063 -1.7285 34 1 5.7898 4.4601 -5.4374 35 1 7.7884 2.9014 0.6648 36 1 8.0144 4.3637 -0.3456 37 1 7.9615 5.8284 1.5693 38 1 8.8441 4.4102 2.2210 39 1 5.7079 5.4139 4.4096 40 1 7.4787 5.5919 4.4397 41 1 6.5075 6.5484 3.2951 42 1 4.9974 5.4191 1.8444 43 1 4.7898 3.6764 2.1788 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170156372.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:15 Heat of formation + Delta-G solvation = -113.516918 kcal Electronic energy + Delta-G solvation = -21803.497490 eV Core-core repulsion = 18654.559869 eV Total energy + Delta-G solvation = -3148.937621 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.51572 -40.03561 -37.73400 -36.69054 -34.52746 -32.71716 -31.60343 -30.62454 -29.11653 -27.40374 -25.19200 -24.27800 -23.32074 -21.84114 -20.98597 -20.19131 -18.96746 -18.64386 -17.82772 -17.28390 -16.85395 -16.31199 -16.05153 -15.60851 -15.39475 -14.93797 -14.43626 -14.37154 -14.24594 -13.68836 -13.59292 -13.52885 -13.22269 -13.11913 -12.75264 -12.72634 -12.57616 -12.47167 -12.20629 -12.03614 -11.85188 -11.61009 -11.53691 -11.48531 -11.46130 -11.36409 -11.30342 -11.18289 -10.81994 -9.04933 -8.35805 -6.38876 1.27342 1.27935 1.30115 1.41929 1.66650 2.28348 2.99542 3.25699 3.71218 3.83060 3.88685 4.00715 4.07054 4.12484 4.21381 4.35220 4.52652 4.55517 4.63284 4.64784 4.74428 4.80305 4.84866 4.90931 4.93288 4.94912 5.00148 5.11310 5.13744 5.15289 5.18372 5.24592 5.35917 5.36773 5.43473 5.49309 5.56270 5.66231 6.01504 6.24841 6.36203 6.66326 6.88574 7.27804 8.79386 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.009934 B = 0.008644 C = 0.005135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2817.826249 B = 3238.447464 C = 5451.686171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.051 3.949 3 O -0.366 6.366 4 C 0.468 3.532 5 O -0.523 6.523 6 C 0.058 3.942 7 N -0.513 5.513 8 C 0.167 3.833 9 C -0.545 4.545 10 H 0.050 0.950 11 C 0.023 3.977 12 N -0.938 5.938 13 Si 0.930 3.070 14 H -0.275 1.275 15 H -0.277 1.277 16 H -0.254 1.254 17 C 0.085 3.915 18 H 0.030 0.970 19 C -0.111 4.111 20 C -0.109 4.109 21 C -0.088 4.088 22 H 0.073 0.927 23 C -0.138 4.138 24 C -0.115 4.115 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.103 0.897 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.136 0.864 31 H 0.073 0.927 32 H 0.029 0.971 33 H 0.013 0.987 34 H 0.266 0.734 35 H 0.061 0.939 36 H 0.044 0.956 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.054 0.946 42 H 0.073 0.927 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.194 -3.048 15.089 15.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.022 4.022 3 O -0.284 6.284 4 C 0.311 3.689 5 O -0.412 6.412 6 C -0.071 4.071 7 N -0.237 5.237 8 C 0.039 3.961 9 C -0.584 4.584 10 H 0.068 0.932 11 C -0.176 4.176 12 N -0.578 5.578 13 Si 0.755 3.245 14 H -0.200 1.200 15 H -0.203 1.203 16 H -0.178 1.178 17 C -0.023 4.023 18 H 0.048 0.952 19 C -0.149 4.149 20 C -0.147 4.147 21 C -0.106 4.106 22 H 0.092 0.908 23 C -0.195 4.195 24 C -0.153 4.153 25 H 0.093 0.907 26 H 0.082 0.918 27 H 0.121 0.879 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.153 0.847 31 H 0.090 0.910 32 H 0.047 0.953 33 H 0.031 0.969 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.092 0.908 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.848 -3.692 15.234 16.141 hybrid contribution 0.143 -0.116 -1.832 1.841 sum -3.705 -3.808 13.402 14.417 Atomic orbital electron populations 1.21810 0.89967 1.04439 1.03724 1.23279 0.97365 0.79403 1.02187 1.86493 1.23960 1.33742 1.84156 1.23956 0.80459 0.93001 0.71450 1.90585 1.60986 1.43798 1.45786 1.21625 0.90502 0.89877 1.05073 1.62257 1.03676 1.32999 1.24796 1.19951 0.95993 0.94511 0.85607 1.21840 1.38528 1.04236 0.93788 0.93185 1.25668 0.95995 0.98698 0.97261 1.70034 1.48813 1.34118 1.04821 0.85957 0.79572 0.80298 0.78687 1.20027 1.20264 1.17810 1.22234 0.95083 0.89339 0.95598 0.95227 1.22283 0.94037 1.00387 0.98204 1.22514 0.98506 0.99653 0.94028 1.21879 0.93768 0.99676 0.95324 0.90828 1.21766 1.02191 0.97436 0.98091 1.22419 0.98587 1.01447 0.92803 0.90683 0.91800 0.87894 0.92538 0.90922 0.84695 0.90959 0.95263 0.96908 0.92451 0.91994 0.93678 0.91243 0.90376 0.92056 0.91737 0.92645 0.90803 0.91034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 10.29 71.98 0.74 -1.83 16 2 C 0.05 1.35 6.19 71.98 0.45 1.80 16 3 O -0.37 -12.22 10.22 -51.41 -0.53 -12.74 16 4 C 0.47 18.23 7.64 71.24 0.54 18.77 16 5 O -0.52 -23.16 15.05 21.97 0.33 -22.83 16 6 C 0.06 2.23 5.14 85.55 0.44 2.67 16 7 N -0.51 -21.59 4.04 -875.83 -3.54 -25.13 16 8 C 0.17 8.33 3.69 85.56 0.32 8.65 16 9 C -0.55 -30.64 7.90 25.60 0.20 -30.43 16 10 H 0.05 3.03 6.24 -2.91 -0.02 3.01 16 11 C 0.02 1.33 5.47 84.65 0.46 1.79 16 12 N -0.94 -57.75 13.96 21.45 0.30 -57.45 16 13 Si 0.93 45.61 27.45 68.60 1.88 47.49 16 14 H -0.27 -13.31 7.11 99.48 0.71 -12.60 16 15 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 16 H -0.25 -12.04 6.56 99.48 0.65 -11.38 16 17 C 0.09 3.18 2.35 45.64 0.11 3.29 16 18 H 0.03 1.30 6.36 -2.39 -0.02 1.28 16 19 C -0.11 -3.89 5.30 31.67 0.17 -3.72 16 20 C -0.11 -2.84 6.33 31.89 0.20 -2.64 16 21 C -0.09 -2.09 3.46 -9.72 -0.03 -2.12 16 22 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 23 C -0.14 -2.52 9.12 71.98 0.66 -1.87 16 24 C -0.11 -3.22 5.23 31.32 0.16 -3.06 16 25 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.06 1.60 8.13 -2.39 -0.02 1.58 16 29 H 0.07 1.81 8.13 -2.39 -0.02 1.79 16 30 H 0.14 4.16 5.71 -2.39 -0.01 4.15 16 31 H 0.07 3.13 6.55 -2.39 -0.02 3.11 16 32 H 0.03 1.49 6.24 -2.39 -0.01 1.48 16 33 H 0.01 0.68 6.22 -2.39 -0.01 0.67 16 34 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 35 H 0.06 2.26 7.88 -2.39 -0.02 2.25 16 36 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.07 1.73 8.04 -2.39 -0.02 1.72 16 38 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 39 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.05 1.02 8.12 -2.38 -0.02 1.00 16 42 H 0.07 1.89 7.84 -2.39 -0.02 1.87 16 43 H 0.07 1.97 6.30 -2.39 -0.02 1.95 16 Total: -1.00 -68.15 334.81 3.78 -64.37 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: 0.92 Total: 14.99 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: 4.41 Total: -8.69 kcal Atomic # 7 Polarization: -79.34 SS G_CDS: -3.24 Total: -82.58 kcal Atomic # 8 Polarization: -35.38 SS G_CDS: -0.19 Total: -35.57 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.88 Total: 47.49 kcal Total: -68.15 3.78 -64.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170156372.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.148 kcal (2) G-P(sol) polarization free energy of solvation -68.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds