Wall clock time and date at job start Mon Mar 30 2020 01:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45201 * 109.47056 * 2 1 4 4 C 1.34229 * 117.00143 * 179.97438 * 3 2 1 5 5 O 1.20829 * 120.00107 * 0.02562 * 4 3 2 6 6 C 1.50704 * 120.00261 * 179.72393 * 4 3 2 7 7 C 1.52998 * 109.46966 * 60.27556 * 6 4 3 8 8 C 1.52997 * 109.46883 * 300.27994 * 6 4 3 9 9 C 1.53000 * 109.47167 * 179.97438 * 8 6 4 10 10 C 1.53005 * 109.47249 * 59.99566 * 9 8 6 11 11 N 1.46496 * 109.46869 * 60.00356 * 10 9 8 12 12 C 1.46495 * 120.00418 * 117.56349 * 11 10 9 13 13 C 1.36944 * 120.00049 * 297.55971 * 11 10 9 14 14 H 1.08000 * 120.00096 * 5.76637 * 13 11 10 15 15 C 1.38811 * 120.00079 * 185.75950 * 13 11 10 16 16 N 1.31617 * 120.00001 * 351.16058 * 15 13 11 17 17 Si 1.86802 * 119.99833 * 171.16065 * 15 13 11 18 18 H 1.48495 * 109.47312 * 90.00386 * 17 15 13 19 19 H 1.48505 * 109.46962 * 210.00277 * 17 15 13 20 20 H 1.48500 * 109.47036 * 329.99737 * 17 15 13 21 21 C 1.52998 * 109.47108 * 300.00556 * 10 9 8 22 22 C 1.52998 * 109.47241 * 180.27593 * 6 4 3 23 23 H 1.09001 * 109.47262 * 299.99950 * 1 2 3 24 24 H 1.09007 * 109.46752 * 59.99731 * 1 2 3 25 25 H 1.09000 * 109.46926 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47262 * 240.00050 * 2 1 3 27 27 H 1.08992 * 109.47094 * 119.99884 * 2 1 3 28 28 H 1.09005 * 109.47211 * 60.00150 * 7 6 4 29 29 H 1.08998 * 109.47368 * 180.02562 * 7 6 4 30 30 H 1.09005 * 109.47408 * 300.00600 * 7 6 4 31 31 H 1.09007 * 109.47324 * 299.99689 * 8 6 4 32 32 H 1.08997 * 109.47582 * 59.99800 * 8 6 4 33 33 H 1.09007 * 109.46866 * 300.00118 * 9 8 6 34 34 H 1.08998 * 109.47948 * 179.97438 * 9 8 6 35 35 H 1.08998 * 109.47306 * 180.02562 * 10 9 8 36 36 H 1.09002 * 109.46887 * 358.88351 * 12 11 10 37 37 H 1.08999 * 109.47662 * 118.88811 * 12 11 10 38 38 H 1.09003 * 109.47626 * 238.89195 * 12 11 10 39 39 H 0.97002 * 120.00255 * 179.97438 * 16 15 13 40 40 H 1.09007 * 109.47254 * 299.99599 * 21 10 9 41 41 H 1.08997 * 109.47300 * 179.97438 * 21 10 9 42 42 H 1.08997 * 109.47305 * 300.00241 * 22 6 4 43 43 H 1.09007 * 109.46888 * 60.00359 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9207 2.9375 -0.0057 7 6 3.4534 3.6883 1.2428 8 6 3.4449 3.6806 -1.2556 9 6 4.0291 5.0946 -1.2617 10 6 5.5571 5.0151 -1.2663 11 7 6.0050 4.2966 -2.4618 12 6 6.8361 4.9777 -3.4575 13 6 5.6469 2.9881 -2.6486 14 1 4.9592 2.5134 -1.9643 15 6 6.1675 2.2718 -3.7176 16 7 6.8638 2.8904 -4.6475 17 14 5.8799 0.4298 -3.8362 18 1 4.6292 0.1719 -4.5941 19 1 7.0240 -0.2056 -4.5382 20 1 5.7581 -0.1411 -2.4708 21 6 6.0329 4.2720 -0.0164 22 6 5.4486 2.8574 -0.0107 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 3.7924 3.1588 2.1333 29 1 3.8697 4.6956 1.2381 30 1 2.3649 3.7453 1.2464 31 1 3.7778 3.1457 -2.1452 32 1 2.3564 3.7376 -1.2521 33 1 3.6959 5.6292 -0.3721 34 1 3.6905 5.6239 -2.1523 35 1 5.9733 6.0225 -1.2702 36 1 6.9996 6.0104 -3.1491 37 1 7.7955 4.4671 -3.5407 38 1 6.3316 4.9627 -4.4236 39 1 7.2280 2.3898 -5.3943 40 1 5.6996 4.8066 0.8731 41 1 7.1214 4.2149 -0.0199 42 1 5.7876 2.3280 0.8798 43 1 5.7815 2.3225 -0.9002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171956431.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:13 Heat of formation + Delta-G solvation = -32.823726 kcal Electronic energy + Delta-G solvation = -23103.747028 eV Core-core repulsion = 19958.308526 eV Total energy + Delta-G solvation = -3145.438502 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.71055 -38.76497 -36.21770 -34.53957 -32.05613 -31.41081 -30.02192 -29.29220 -27.44450 -25.32561 -24.21066 -22.69032 -21.93061 -21.55049 -19.89618 -18.07594 -17.09813 -16.79699 -16.30515 -16.15291 -14.46539 -14.30862 -14.11829 -13.96207 -13.58585 -13.20736 -12.91166 -12.79313 -12.68288 -12.18237 -12.04983 -11.74072 -11.53111 -11.47698 -11.42307 -11.20188 -11.09400 -10.77887 -10.64888 -10.56811 -10.35628 -10.31057 -10.22057 -9.95659 -9.82758 -9.43202 -9.30151 -8.48084 -8.09358 -6.80246 -5.61204 -2.97212 2.67700 3.00818 3.42138 3.50370 3.60967 4.55395 4.90442 4.96582 5.06993 5.17870 5.29186 5.31859 5.43293 5.52164 5.54976 5.76423 5.77774 5.81706 5.91426 5.95808 6.05679 6.10078 6.15782 6.28584 6.28889 6.35203 6.50265 6.62583 6.68157 6.73353 6.82927 6.91501 6.98969 7.12302 7.21969 7.44412 7.73328 7.77256 8.00502 8.20805 8.43620 9.32705 9.98918 10.42642 11.38382 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.016933 B = 0.009014 C = 0.006742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.161295 B = 3105.675515 C = 4152.267755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.057 3.943 3 O -0.358 6.358 4 C 0.468 3.532 5 O -0.503 6.503 6 C -0.040 4.040 7 C -0.140 4.140 8 C -0.137 4.137 9 C -0.119 4.119 10 C 0.174 3.826 11 N -0.606 5.606 12 C 0.170 3.830 13 C -0.264 4.264 14 H 0.119 0.881 15 C -0.003 4.003 16 N -0.911 5.911 17 Si 0.879 3.121 18 H -0.290 1.290 19 H -0.289 1.289 20 H -0.267 1.267 21 C -0.117 4.117 22 C -0.137 4.137 23 H 0.064 0.936 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.050 0.950 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.126 0.874 32 H 0.050 0.950 33 H 0.048 0.952 34 H 0.058 0.942 35 H 0.054 0.946 36 H -0.011 1.011 37 H 0.038 0.962 38 H 0.042 0.958 39 H 0.248 0.752 40 H 0.046 0.954 41 H 0.059 0.941 42 H 0.044 0.956 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.378 1.044 10.038 13.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.017 4.017 3 O -0.275 6.275 4 C 0.311 3.689 5 O -0.390 6.390 6 C -0.041 4.041 7 C -0.197 4.197 8 C -0.173 4.173 9 C -0.159 4.159 10 C 0.065 3.935 11 N -0.330 5.330 12 C 0.026 3.974 13 C -0.391 4.391 14 H 0.135 0.865 15 C -0.200 4.200 16 N -0.558 5.558 17 Si 0.708 3.292 18 H -0.217 1.217 19 H -0.215 1.215 20 H -0.192 1.192 21 C -0.156 4.156 22 C -0.173 4.173 23 H 0.083 0.917 24 H 0.086 0.914 25 H 0.094 0.906 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.143 0.857 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.007 0.993 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.062 0.938 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -9.073 0.654 9.869 13.422 hybrid contribution -0.139 -1.315 -0.096 1.326 sum -9.212 -0.662 9.774 13.447 Atomic orbital electron populations 1.21779 0.92961 1.02567 1.03382 1.22950 0.95115 0.81267 1.02364 1.86521 1.25330 1.31351 1.84340 1.24133 0.79985 0.93133 0.71626 1.90656 1.60305 1.43192 1.44798 1.20535 0.97524 0.87472 0.98552 1.21936 1.01221 1.01097 0.95478 1.22310 0.98783 0.97661 0.98590 1.21955 0.98351 0.95575 1.00013 1.20334 0.91994 0.93921 0.87213 1.44042 1.59529 1.09963 1.19470 1.21048 0.95411 0.89328 0.91581 1.20103 1.22400 0.87284 1.09336 0.86455 1.24887 0.99912 0.97636 0.97519 1.70236 1.40238 1.33203 1.12165 0.86582 0.77291 0.86636 0.78667 1.21683 1.21507 1.19198 1.21910 1.00182 0.95785 0.97752 1.22414 0.90001 0.99030 1.05886 0.91697 0.91436 0.90623 0.91395 0.91681 0.93107 0.90464 0.92192 0.85679 0.93087 0.93356 0.92294 0.92791 0.99251 0.94342 0.93995 0.94094 0.93594 0.92256 0.93756 0.84368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 10.29 37.16 0.38 -1.12 16 2 C 0.06 0.79 6.19 37.16 0.23 1.02 16 3 O -0.36 -5.98 10.03 -39.25 -0.39 -6.37 16 4 C 0.47 8.98 6.37 36.01 0.23 9.21 16 5 O -0.50 -11.12 15.73 -18.75 -0.29 -11.42 16 6 C -0.04 -0.71 0.46 -155.66 -0.07 -0.78 16 7 C -0.14 -2.01 7.71 37.16 0.29 -1.72 16 8 C -0.14 -2.54 4.29 -26.73 -0.11 -2.66 16 9 C -0.12 -2.10 5.35 -26.73 -0.14 -2.24 16 10 C 0.17 3.39 3.29 -67.93 -0.22 3.17 16 11 N -0.61 -14.55 2.87 -173.49 -0.50 -15.05 16 12 C 0.17 4.20 9.01 59.84 0.54 4.74 16 13 C -0.26 -6.84 5.56 -15.06 -0.08 -6.93 16 14 H 0.12 2.93 2.14 -52.49 -0.11 2.82 16 15 C 0.00 -0.07 5.44 -17.43 -0.09 -0.17 16 16 N -0.91 -26.34 9.48 55.49 0.53 -25.82 16 17 Si 0.88 22.42 29.56 -169.99 -5.03 17.40 16 18 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 19 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 20 H -0.27 -6.95 7.11 56.52 0.40 -6.55 16 21 C -0.12 -2.13 5.34 -26.71 -0.14 -2.27 16 22 C -0.14 -2.71 3.65 -26.71 -0.10 -2.81 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 27 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 1.03 4.81 -51.93 -0.25 0.78 16 30 H 0.06 0.79 8.12 -51.93 -0.42 0.37 16 31 H 0.13 2.81 4.26 -51.93 -0.22 2.59 16 32 H 0.05 0.87 8.11 -51.93 -0.42 0.45 16 33 H 0.05 0.72 6.43 -51.93 -0.33 0.38 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.05 0.99 7.55 -51.93 -0.39 0.60 16 36 H -0.01 -0.24 7.55 -51.93 -0.39 -0.63 16 37 H 0.04 1.03 7.03 -51.93 -0.36 0.67 16 38 H 0.04 1.12 7.07 -51.93 -0.37 0.76 16 39 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 40 H 0.05 0.71 6.43 -51.93 -0.33 0.37 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.04 0.85 8.10 -51.93 -0.42 0.43 16 43 H 0.14 3.31 4.01 -51.93 -0.21 3.11 16 LS Contribution 316.98 15.07 4.78 4.78 Total: -1.00 -29.97 316.98 -6.97 -36.93 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -6.75 Total: 2.12 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: 0.70 Total: -2.57 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: 0.03 Total: -40.87 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.69 Total: -17.79 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.03 Total: 17.40 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.97 -6.97 -36.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171956431.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.110 kcal (2) G-P(sol) polarization free energy of solvation -29.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds